Experiment set4IT064 for Pseudomonas simiae WCS417

Compare to:

LB with Choline Lysine 25 mM

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.9 -5.7 LysR family transcriptional regulator compare
PS417_27800 -5.0 -9.5 exodeoxyribonuclease III compare
PS417_01605 -4.3 -2.9 phosphoglycerate mutase compare
PS417_20985 -4.1 -6.2 porin compare
PS417_23915 -4.0 -7.9 pantoate--beta-alanine ligase compare
PS417_02555 -4.0 -22.8 exoribonuclease R compare
PS417_24155 -3.4 -4.5 ATP-binding protein compare
PS417_16850 -3.1 -5.8 cation:proton antiporter compare
PS417_16845 -2.8 -5.5 monovalent cation/H+ antiporter subunit E compare
PS417_23910 -2.7 -7.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_16830 -2.7 -12.3 monovalent cation/H+ antiporter subunit A conserved
PS417_24710 -2.7 -9.3 lipoprotein compare
PS417_22445 -2.6 -4.6 ATP-dependent DNA helicase RuvB compare
PS417_16840 -2.6 -9.2 monovalent cation/H+ antiporter subunit D conserved
PS417_21630 -2.5 -4.6 magnesium transporter compare
PS417_25645 -2.5 -8.1 peptidase M23 compare
PS417_02335 -2.3 -1.6 multidrug DMT transporter compare
PS417_23770 -2.2 -3.5 exodeoxyribonuclease V subunit alpha compare
PS417_00405 -2.1 -9.4 DNA polymerase I compare
PS417_24835 -2.1 -7.7 hypothetical protein compare
PS417_24705 -2.1 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_05365 -1.9 -2.8 FAD-binding protein compare
PS417_02340 -1.9 -5.3 LysR family transcriptional regulator compare
PS417_20130 -1.9 -10.4 dehydrogenase compare
PS417_26990 -1.8 -1.9 RNA pyrophosphohydrolase compare
PS417_27245 -1.8 -4.9 aminotransferase DegT compare
PS417_25390 -1.8 -4.1 MFS transporter compare
PS417_02485 -1.7 -4.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24605 -1.7 -3.6 thiamine-phosphate pyrophosphorylase compare
PS417_24345 -1.6 -3.8 ubiquinol oxidase subunit II compare
PS417_02475 -1.6 -3.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_27870 -1.6 -4.1 ATP-dependent DNA helicase RecG compare
PS417_27795 -1.6 -1.6 orotate phosphoribosyltransferase compare
PS417_02280 -1.6 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_00755 -1.6 -1.2 biofilm PGA synthesis protein PgaD compare
PS417_04170 -1.6 -5.7 stringent starvation protein A compare
PS417_08125 -1.5 -1.5 prephenate dehydratase compare
PS417_06530 -1.5 -4.2 membrane protein compare
PS417_23775 -1.5 -3.0 exodeoxyribonuclease V subunit beta compare
PS417_26775 -1.4 -5.3 thiazole synthase compare
PS417_04050 -1.4 -2.8 peptide ABC transporter ATP-binding protein compare
PS417_19600 -1.4 -1.1 exonuclease compare
PS417_17945 -1.4 -1.6 hypothetical protein compare
PS417_22620 -1.3 -5.8 pyruvate kinase compare
PS417_00180 -1.3 -3.5 tryptophan synthase subunit alpha compare
PS417_05695 -1.3 -3.9 transcriptional regulator compare
PS417_24350 -1.3 -4.0 cytochrome D ubiquinol oxidase subunit I compare
PS417_02270 -1.2 -5.7 carbamoyltransferase compare
PS417_04275 -1.2 -8.4 hypothetical protein compare
PS417_20610 -1.2 -1.4 hypothetical protein compare
PS417_27300 -1.2 -1.0 cell division protein ZapA compare
PS417_01915 -1.2 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15540 -1.2 -1.5 NUDIX hydrolase compare
PS417_13305 -1.1 -1.7 hypothetical protein compare
PS417_01920 -1.1 -2.2 ATP-dependent protease subunit HslV compare
PS417_20825 -1.1 -1.9 drug:proton antiporter compare
PS417_16490 -1.1 -1.6 cell division protein FtsK compare
PS417_24600 -1.1 -4.5 hydrogenase compare
PS417_00065 -1.1 -1.5 3-methyladenine DNA glycosylase compare
PS417_09235 -1.0 -1.1 molecular chaperone compare
PS417_14515 -1.0 -1.8 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_11925 -1.0 -1.7 hypothetical protein compare
PS417_22450 -1.0 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_22795 -1.0 -1.9 exclusion suppressor FxsA compare
PS417_08090 -1.0 -1.1 3-oxoacyl-ACP reductase compare
PS417_06205 -1.0 -5.4 methionine aminopeptidase compare
PS417_13140 -1.0 -2.1 oxidoreductase compare
PS417_06835 -0.9 -1.4 phospholipase compare
PS417_05815 -0.9 -4.1 recombinase RecA compare
PS417_08025 -0.9 -1.5 acetylornithine aminotransferase compare
PS417_15805 -0.9 -1.6 transporter compare
PS417_16855 -0.9 -1.3 cation:proton antiporter compare
PS417_14070 -0.9 -0.7 hypothetical protein compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_15480 -0.9 -1.6 ABC transporter substrate-binding protein compare
PS417_25405 -0.9 -5.8 catalase compare
PS417_00355 -0.9 -3.1 metal ABC transporter permease compare
PS417_16555 -0.9 -1.8 cupin compare
PS417_08220 -0.9 -1.1 epimerase compare
PS417_04375 -0.9 -2.4 ABC transporter ATP-binding protein compare
PS417_21655 -0.9 -1.3 aspartate kinase compare
PS417_17215 -0.8 -3.1 peptidylprolyl isomerase compare
PS417_15770 -0.8 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_01600 -0.8 -3.0 peptidase M23 compare
PS417_16715 -0.8 -1.5 DoxX family protein compare
PS417_21870 -0.8 -2.3 glycerophosphodiester phosphodiesterase compare
PS417_27835 -0.8 -5.3 endoribonuclease compare
PS417_08730 -0.8 -1.7 cytochrome C compare
PS417_04385 -0.8 -3.3 organic solvent ABC transporter substrate-binding protein compare
PS417_25225 -0.8 -1.8 MFS transporter compare
PS417_04875 -0.8 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_04595 -0.8 -2.5 cell division protein MraZ compare
PS417_24575 -0.8 -1.4 hypothetical protein compare
PS417_07710 -0.8 -4.6 membrane protein compare
PS417_02740 -0.8 -2.2 LysR family transcriptional regulator compare
PS417_00650 -0.8 -0.9 LysR family transcriptional regulator compare
PS417_03560 -0.8 -1.2 GTP-binding protein compare
PS417_06370 -0.8 -1.8 cold-shock protein compare
PS417_01575 -0.8 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26900 -0.8 -1.9 L-cystine transporter tcyP compare
PS417_28040 -0.8 -3.2 histidine kinase compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_27195 -0.8 -1.4 N-acetylglutamate synthase compare
PS417_13055 -0.8 -1.7 aminotransferase compare
PS417_04415 -0.8 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23095 -0.8 -1.0 exodeoxyribonuclease compare
PS417_17855 -0.8 -2.9 major facilitator transporter compare
PS417_10015 -0.7 -1.1 hypothetical protein compare
PS417_02255 -0.7 -2.1 lipopolysaccharide kinase compare
PS417_18355 -0.7 -3.9 DNA-binding protein compare
PS417_20080 -0.7 -1.2 peptidase P60 compare
PS417_23615 -0.7 -1.5 sulfate transporter compare
PS417_27315 -0.7 -1.1 hypothetical protein compare
PS417_15465 -0.7 -2.3 carboxynorspermidine decarboxylase compare
PS417_10220 -0.7 -2.1 hypothetical protein compare
PS417_02415 -0.7 -1.5 phosphoserine phosphatase compare
PS417_04390 -0.7 -3.4 toluene tolerance protein compare
PS417_15790 -0.7 -2.9 hypothetical protein compare
PS417_26800 -0.7 -4.5 cell division protein FtsX compare
PS417_17835 -0.7 -1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_25270 -0.7 -2.1 NrdR family transcriptional regulator compare
PS417_26605 -0.7 -1.2 malonate decarboxylase subunit beta compare
PS417_05590 -0.7 -4.2 iron ABC transporter ATP-binding protein compare
PS417_22530 -0.7 -2.6 hypothetical protein compare
PS417_25710 -0.7 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_15975 -0.7 -1.5 glutamate carboxypeptidase compare
PS417_18420 -0.7 -1.8 deoxyribonuclease compare
PS417_15215 -0.7 -1.7 protein activator of alkane oxidation PraA compare
PS417_04650 -0.7 -0.6 D-alanine--D-alanine ligase compare
PS417_03310 -0.7 -4.2 carbonate dehydratase compare
PS417_27040 -0.7 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_26470 -0.7 -1.7 cytochrome C compare
PS417_20635 -0.7 -0.7 ABC transporter ATP-binding protein compare
PS417_03430 -0.7 -2.8 methyltransferase type 11 compare
PS417_07550 -0.7 -3.7 lytic transglycosylase compare
PS417_26695 -0.7 -1.0 uracil phosphoribosyltransferase compare
PS417_18360 -0.7 -1.9 hypothetical protein compare
PS417_18780 -0.7 -1.3 flavin reductase compare
PS417_08170 -0.7 -4.6 capsular biosynthesis protein compare
PS417_20140 -0.7 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
PS417_23210 -0.7 -1.4 serine acetyltransferase compare
PS417_01115 -0.7 -0.9 serine acetyltransferase compare
PS417_18495 -0.7 -1.8 hypothetical protein compare
PS417_03100 -0.7 -1.0 pilus assembly protein compare
PS417_26715 -0.7 -2.7 peptidase P60 compare
PS417_05200 -0.7 -1.6 DNA recombination protein RecO compare
PS417_02160 -0.7 -0.9 hypothetical protein compare
PS417_06200 -0.6 -2.2 protein-PII uridylyltransferase compare
PS417_27260 -0.6 -3.9 iron ABC transporter permease compare
PS417_08045 -0.6 -1.5 uracil permease compare
PS417_17630 -0.6 -0.7 RNA polymerase sigma factor compare
PS417_17670 -0.6 -2.4 ABC transporter permease compare
PS417_04365 -0.6 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02480 -0.6 -3.2 DNA mismatch repair protein compare
PS417_04420 -0.6 -3.7 histidinol dehydrogenase compare
PS417_22410 -0.6 -2.7 hypothetical protein compare
PS417_00185 -0.6 -2.6 tryptophan synthase subunit beta compare
PS417_23950 -0.6 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_18490 -0.6 -1.7 hypothetical protein compare
PS417_03005 -0.6 -3.6 arginine decarboxylase compare
PS417_21830 -0.6 -2.8 TetR family transcriptional regulator compare
PS417_04960 -0.6 -1.0 hypothetical protein compare
PS417_11520 -0.6 -2.4 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_10185 -0.6 -1.9 hypothetical protein compare
PS417_21845 -0.6 -1.1 membrane protein compare
PS417_27265 -0.6 -3.2 iron ABC transporter substrate-binding protein compare
PS417_19285 -0.6 -0.9 ankyrin compare
PS417_19675 -0.6 -2.6 chemotaxis protein CheY compare
PS417_01855 -0.6 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_06970 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_27045 -0.6 -1.7 ATPase compare
PS417_19625 -0.6 -1.8 histidine kinase compare
PS417_24840 -0.6 -1.5 hypothetical protein compare
PS417_18730 -0.6 -1.3 ABC transporter permease compare
PS417_04220 -0.6 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_14295 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_03350 -0.6 -1.2 cytochrome C peroxidase compare
PS417_02510 -0.6 -1.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12290 -0.6 -2.5 sulfite reductase compare
PS417_28510 -0.6 -3.0 chromosome partitioning protein compare
PS417_24320 -0.6 -3.0 large-conductance mechanosensitive channel compare
PS417_00510 -0.6 -0.9 membrane protein compare
PS417_14600 -0.6 -0.9 bleomycin resistance protein compare
PS417_04585 -0.6 -1.0 hypothetical protein compare
PS417_15780 -0.6 -1.4 membrane protein compare
PS417_08430 -0.6 -2.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_03145 -0.6 -1.8 acetyl-CoA acetyltransferase compare
PS417_19425 -0.6 -0.7 allantoicase compare
PS417_23545 -0.6 -1.4 gamma-glutamyl kinase compare
PS417_21995 -0.6 -2.6 hypothetical protein compare
PS417_00075 -0.6 -1.1 hypothetical protein compare
PS417_01340 -0.6 -3.1 agmatine deiminase compare
PS417_28145 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_24355 -0.6 -1.2 MFS transporter compare
PS417_00825 -0.6 -1.4 recombinase RecF compare
PS417_28035 -0.6 -2.8 transcriptional regulator PhoB compare
PS417_11945 -0.6 -1.9 hypothetical protein compare
PS417_00915 -0.6 -2.2 aminotransferase compare
PS417_00045 -0.6 -1.5 glycerol acyltransferase compare
PS417_23820 -0.6 -2.5 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Choline Lysine in Pseudomonas simiae WCS417

For stress Choline Lysine across organisms