Experiment set4IT064 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6F2_phage 0.01875 MOI

200 most important genes:

  gene name fitness t score description  
GFF2475 -5.8 -3.6 Ribonuclease III (EC 3.1.26.3) compare
GFF2690 -5.0 -3.1 Peptide transport system permease protein SapC compare
GFF388 -4.8 -8.4 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF1634 -4.4 -3.0 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF1303 -3.9 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4639 -3.8 -3.4 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF384 -3.7 -3.8 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF4355 -3.5 -1.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4890 -3.4 -10.7 Transport ATP-binding protein CydC compare
GFF267 -3.3 -8.9 Transcriptional activator RfaH compare
GFF4891 -3.1 -11.7 Transport ATP-binding protein CydD compare
GFF2434 -3.0 -1.5 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF3667 -3.0 -2.9 Cytidylate kinase (EC 2.7.4.25) compare
GFF4647 -2.9 -11.3 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF2946 -2.8 -4.5 RNA polymerase sigma-54 factor RpoN compare
GFF4635 -2.7 -2.2 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF4646 -2.7 -10.8 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1256 -2.5 -4.1 Chromosome (plasmid) partitioning protein ParA compare
GFF3712 -2.2 -3.2 Cyclic AMP receptor protein compare
GFF4353 -2.2 -5.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2692 -2.1 -5.8 Peptide transport system ATP-binding protein SapF compare
GFF4652 -2.1 -4.8 Tol biopolymer transport system, TolR protein compare
GFF2991 -2.0 -3.3 Tyrosine recombinase XerD compare
GFF1881 -2.0 -9.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF3890 -2.0 -4.4 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF55 -1.9 -10.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF122 -1.9 -8.5 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4653 -1.9 -2.0 TolA protein compare
GFF3901 -1.8 -3.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF1890 -1.8 -10.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF652 -1.8 -2.4 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF2389 -1.8 -2.3 Trk system potassium uptake protein TrkA compare
GFF4636 -1.8 -6.4 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF1716 -1.8 -5.4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF629 -1.7 -1.9 Shikimate kinase I (EC 2.7.1.71) compare
GFF1883 -1.7 -6.9 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF1891 -1.7 -3.8 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF2430 -1.7 -2.3 Ferredoxin, 2Fe-2S compare
GFF2216 -1.7 -8.1 DNA polymerase I (EC 2.7.7.7) compare
GFF4600 -1.7 -4.1 SeqA protein, negative modulator of initiation of replication compare
GFF1887 -1.6 -8.7 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF1880 -1.6 -8.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1879 -1.6 -8.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2047 -1.6 -6.6 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF4655 -1.6 -2.8 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1886 -1.6 -7.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF4596 -1.6 -3.6 Ferric uptake regulation protein FUR compare
GFF1889 -1.5 -7.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF824 -1.5 -2.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2104 -1.5 -2.5 ATP-dependent RNA helicase SrmB compare
GFF391 -1.5 -1.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF380 -1.5 -6.6 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF236 -1.5 -1.1 FIG00545237: hypothetical protein compare
GFF1921 -1.5 -2.9 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF1884 -1.5 -1.8 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF4798 -1.5 -4.7 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF633 -1.5 -3.9 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1750 -1.5 -2.8 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF1885 -1.4 -5.6 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF389 -1.4 -3.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF230 -1.4 -6.8 Adenylate cyclase (EC 4.6.1.1) compare
GFF2881 -1.4 -5.9 WzxE protein compare
GFF1888 -1.4 -2.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF1076 -1.4 -3.3 Aerobic respiration control protein arcA compare
GFF4637 -1.4 -9.6 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF1882 -1.4 -5.0 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF3888 -1.4 -4.7 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF115 -1.4 -3.1 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4354 -1.3 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF20 -1.3 -4.2 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF276 -1.3 -4.5 Potassium uptake protein TrkH compare
GFF121 -1.3 -2.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2948 -1.3 -3.2 PTS system nitrogen-specific IIA component, PtsN compare
GFF603 -1.3 -4.1 NfuA Fe-S protein maturation compare
GFF1737 -1.3 -2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF242 -1.2 -2.1 Magnesium and cobalt transport protein CorA compare
GFF4638 -1.2 -4.7 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF119 -1.2 -1.1 hypothetical protein compare
GFF4288 -1.2 -6.0 AroM protein compare
GFF829 -1.2 -1.2 Putative inner membrane protein YjeT (clustered with HflC) compare
GFF2348 -1.2 -3.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF269 -1.2 -2.5 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF1953 -1.2 -3.2 Phosphohistidine phosphatase SixA compare
GFF392 -1.1 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF3370 -1.1 -2.5 COG1399 protein, clustered with ribosomal protein L32p compare
GFF2719 -1.1 -3.5 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF192 -1.1 -6.0 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF4027 -1.1 -1.6 Flagellar biosynthesis protein FliS compare
GFF381 -1.1 -3.0 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF2149 -1.1 -4.8 Malate dehydrogenase (EC 1.1.1.37) compare
GFF4634 -1.1 -4.5 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2433 -1.0 -5.1 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF4654 -1.0 -4.3 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF87 -1.0 -1.4 C4-type zinc finger protein, DksA/TraR family compare
GFF982 -1.0 -7.0 Putative cytoplasmic protein USSDB7A compare
GFF1901 -1.0 -3.9 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF2689 -1.0 -2.1 Peptide transport system permease protein SapB compare
GFF2173 -1.0 -3.2 Chromosomal replication initiator protein DnaA compare
GFF828 -1.0 -3.2 HflC protein compare
GFF883 -1.0 -6.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF3166 -1.0 -2.5 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF635 -1.0 -2.8 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF158 -1.0 -5.0 Fructose repressor FruR, LacI family compare
GFF630 -0.9 -4.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF4060 -0.9 -1.1 putative cytoplasmic protein compare
GFF3685 -0.9 -4.3 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3887 -0.9 -4.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF357 -0.9 -2.3 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4026 -0.9 -2.0 Flagellar biosynthesis protein FliT compare
GFF1719 -0.9 -3.6 ATP synthase protein I compare
GFF4270 -0.9 -0.9 FIG00637869: hypothetical protein compare
GFF4145 -0.9 -0.8 hypothetical protein compare
GFF4250 -0.9 -1.0 Putative copper chaperone compare
GFF1900 -0.9 -4.6 Acetate kinase (EC 2.7.2.1) compare
GFF2182 -0.8 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1808 -0.8 -1.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF4733 -0.8 -1.1 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF3533 -0.8 -1.8 FIG00638687: hypothetical protein compare
GFF2768 -0.8 -1.4 Cation transport regulator chaB compare
GFF2621 -0.8 -1.7 FIG01045328: hypothetical protein compare
GFF2891 -0.8 -4.2 Thioredoxin compare
GFF2397 -0.8 -4.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF333 -0.8 -1.8 hypothetical protein compare
GFF4820 -0.8 -3.4 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) compare
GFF3149 -0.8 -4.9 Type I secretion outer membrane protein, TolC precursor compare
GFF1312 -0.8 -1.9 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF1499 -0.8 -2.5 Ribosome-binding factor A compare
GFF4345 -0.8 -4.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF4342 -0.8 -2.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF2280 -0.8 -2.1 Copper-sensing two-component system response regulator CpxR compare
GFF352 -0.8 -1.1 FIG01048298: hypothetical protein compare
GFF1674 -0.8 -2.2 Universal stress protein C compare
GFF1681 -0.8 -2.2 Ferritin-like protein 2 compare
GFF2220 -0.8 -4.5 Nitrogen regulation protein NR(I) compare
GFF876 -0.8 -5.2 UPF0131 protein YtfP compare
GFF3315 -0.7 -1.3 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF156 -0.7 -1.2 rRNA small subunit methyltransferase H compare
GFF1934 -0.7 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3555 -0.7 -1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF4601 -0.7 -3.7 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4341 -0.7 -1.2 Probable secreted protein compare
GFF2431 -0.7 -1.9 Chaperone protein HscA compare
GFF4358 -0.7 -1.0 FIG01200701: possible membrane protein compare
GFF2688 -0.7 -3.2 Peptide transport periplasmic protein SapA compare
GFF4125 -0.7 -1.3 Mobile element protein compare
GFF342 -0.7 -1.0 FIG01046502: hypothetical protein compare
GFF4892 -0.7 -2.9 Thioredoxin reductase (EC 1.8.1.9) compare
GFF4344 -0.7 -2.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF4473 -0.7 -0.9 FIG01046818: hypothetical protein compare
GFF2222 -0.7 -2.7 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF4182 -0.7 -3.5 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF3830 -0.7 -0.8 Uncharacterized protein YehA precursor compare
GFF1736 -0.7 -0.9 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF1600 -0.7 -2.1 HAD-superfamily hydrolase, subfamily IA compare
GFF4439 -0.7 -3.1 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
GFF4346 -0.7 -3.3 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF2882 -0.7 -3.6 Lipopolysaccharide biosynthesis protein RffA compare
GFF4162 -0.7 -2.4 DNA repair protein RecN compare
GFF4316 -0.7 -1.3 hypothetical protein compare
GFF4614 -0.7 -0.7 hypothetical protein compare
GFF3377 -0.6 -2.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF4158 -0.6 -1.1 tmRNA-binding protein SmpB compare
GFF2773 -0.6 -2.3 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF1591 -0.6 -1.5 Transcription repressor of tripartite multidrug resistance system compare
GFF831 -0.6 -2.5 Nitrite-sensitive transcriptional repressor NsrR compare
GFF1411 -0.6 -2.4 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF3862 -0.6 -1.7 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3867 -0.6 -2.4 Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48) compare
GFF880 -0.6 -4.2 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF825 -0.6 -1.5 RNA-binding protein Hfq compare
GFF3955 -0.6 -1.3 Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
GFF3162 -0.6 -1.0 glycogen synthesis protein GlgS compare
GFF1645 -0.6 -3.0 FIG000859: hypothetical protein YebC compare
GFF1633 -0.6 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
GFF2992 -0.6 -4.1 Flavodoxin 2 compare
GFF2212 -0.6 -2.1 YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling compare
GFF366 -0.6 -1.9 Ribonuclease PH (EC 2.7.7.56) compare
GFF1459 -0.6 -1.8 hypothetical protein compare
GFF341 -0.6 -0.6 RmbA compare
GFF632 -0.6 -2.9 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF379 -0.6 -2.1 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) compare
GFF265 -0.6 -3.0 Twin-arginine translocation protein TatC compare
GFF2858 -0.6 -1.1 G-nucleotide exchange factor SopE compare
GFF2145 -0.6 -0.7 probable ribonuclease inhibitor YPO3690 compare
GFF3163 -0.6 -1.1 hypothetical protein compare
GFF2527 -0.6 -1.1 Choloylglycine hydrolase (EC 3.5.1.24) compare
GFF3338 -0.6 -1.1 hypothetical protein compare
GFF4740 -0.6 -2.9 MxiG protein; Pathogenicity 1 island effector protein compare
GFF4413 -0.6 -1.5 Uncharacterized metabolite ABC transporter in Enterobacteriaceae, ATP-binding protein EC-YbbA compare
GFF2906 -0.6 -1.9 Protein yifE compare
GFF2664 -0.6 -1.7 FIG01200701: possible membrane protein compare
GFF2880 -0.6 -3.3 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF2138 -0.5 -3.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
GFF2477 -0.5 -2.5 Translation elongation factor LepA compare
GFF4461 -0.5 -2.3 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
GFF931 -0.5 -2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF367 -0.5 -2.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF1208 -0.5 -1.2 hypothetical protein compare
GFF3446 -0.5 -1.7 Ferredoxin compare
GFF1935 -0.5 -1.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6F2_phage across organisms