Experiment set4IT063 for Pseudomonas simiae WCS417

Compare to:

LB with 1-ethyl-3-methylimidazolium chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PS417_27300 -2.7 -1.2 cell division protein ZapA compare
PS417_02335 -2.6 -1.8 multidrug DMT transporter compare
PS417_05985 -2.4 -4.8 chemotaxis protein CheY compare
PS417_02340 -2.1 -2.4 LysR family transcriptional regulator compare
PS417_02210 -2.1 -8.0 diguanylate cyclase compare
PS417_15110 -2.0 -10.0 protein BatD compare
PS417_21360 -1.9 -1.6 termination factor Rho compare
PS417_00045 -1.9 -2.9 glycerol acyltransferase compare
PS417_15975 -1.8 -2.3 glutamate carboxypeptidase compare
PS417_23995 -1.8 -1.2 preprotein translocase subunit SecG compare
PS417_01095 -1.8 -2.5 amino acid ABC transporter ATP-binding protein compare
PS417_24155 -1.8 -3.1 ATP-binding protein compare
PS417_27870 -1.8 -4.0 ATP-dependent DNA helicase RecG compare
PS417_23770 -1.7 -2.4 exodeoxyribonuclease V subunit alpha compare
PS417_23950 -1.7 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_06245 -1.7 -3.2 zinc metallopeptidase RseP compare
PS417_14980 -1.7 -1.3 universal stress protein UspA compare
PS417_24705 -1.7 -5.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_13140 -1.6 -2.4 oxidoreductase compare
PS417_15105 -1.6 -8.3 membrane protein compare
PS417_09470 -1.6 -1.5 hypothetical protein compare
PS417_19625 -1.6 -4.5 histidine kinase compare
PS417_13185 -1.6 -3.2 RND transporter compare
PS417_26990 -1.5 -1.7 RNA pyrophosphohydrolase compare
PS417_15100 -1.5 -1.8 BatB protein compare
PS417_19630 -1.5 -2.9 LuxR family transcriptional regulator compare
PS417_27800 -1.5 -7.0 exodeoxyribonuclease III compare
PS417_05975 -1.4 -0.9 chemotaxis protein CheW compare
PS417_20985 -1.4 -3.0 porin compare
PS417_13735 -1.4 -1.9 hypothetical protein compare
PS417_24500 -1.4 -4.4 DEAD/DEAH box helicase compare
PS417_15540 -1.4 -1.3 NUDIX hydrolase compare
PS417_19425 -1.4 -1.1 allantoicase compare
PS417_15095 -1.4 -3.2 hypothetical protein compare
PS417_04015 -1.3 -4.0 choline ABC transporter permease compare
PS417_21655 -1.3 -1.1 aspartate kinase compare
PS417_16715 -1.2 -1.1 DoxX family protein compare
PS417_04960 -1.2 -1.5 hypothetical protein compare
PS417_18545 -1.2 -3.7 cell division protein compare
PS417_08025 -1.2 -1.9 acetylornithine aminotransferase compare
PS417_02720 -1.2 -1.0 TetR family transcriptional regulator compare
PS417_17945 -1.2 -1.1 hypothetical protein compare
PS417_13075 -1.2 -1.3 hypothetical protein compare
PS417_09235 -1.2 -0.9 molecular chaperone compare
PS417_07120 -1.2 -3.2 RNA polymerase sigma-H factor compare
PS417_01145 -1.2 -1.1 taurine transporter ATP-binding subunit compare
PS417_06205 -1.2 -6.6 methionine aminopeptidase compare
PS417_20880 -1.2 -2.2 GntR family transcriptional regulator compare
PS417_15780 -1.2 -1.8 membrane protein compare
PS417_22565 -1.2 -1.3 formyltetrahydrofolate deformylase compare
PS417_26985 -1.1 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15090 -1.1 -1.1 hypothetical protein compare
PS417_08155 -1.1 -1.3 integration host factor subunit beta compare
PS417_15465 -1.1 -2.7 carboxynorspermidine decarboxylase compare
PS417_10955 -1.1 -2.8 porin compare
PS417_27195 -1.1 -1.4 N-acetylglutamate synthase compare
PS417_20575 -1.0 -5.5 ATP-dependent helicase HrpA conserved
PS417_20585 -1.0 -4.4 chemotaxis protein compare
PS417_27865 -1.0 -3.4 LysR family transcriptional regulator compare
PS417_13175 -1.0 -1.3 iron transporter compare
PS417_11400 -1.0 -0.9 phosphoglycerate mutase compare
PS417_20030 -1.0 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_16855 -1.0 -1.2 cation:proton antiporter compare
PS417_27180 -1.0 -2.0 peroxidase compare
PS417_13010 -1.0 -1.9 alpha/beta hydrolase compare
PS417_15675 -1.0 -2.2 chemotaxis protein compare
PS417_22990 -1.0 -1.4 iron dicitrate transport regulator FecR compare
PS417_22505 -1.0 -3.5 mechanosensitive ion channel protein MscS compare
PS417_19635 -1.0 -6.4 lipid kinase compare
PS417_07095 -1.0 -5.7 histidine kinase compare
PS417_23025 -1.0 -4.4 murein transglycosylase compare
PS417_07470 -1.0 -1.3 hypothetical protein compare
PS417_06895 -1.0 -2.4 DNA-binding protein compare
PS417_17855 -1.0 -2.0 major facilitator transporter compare
PS417_08430 -1.0 -3.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_27795 -1.0 -0.9 orotate phosphoribosyltransferase compare
PS417_12565 -1.0 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_11455 -1.0 -2.1 hypothetical protein compare
PS417_02950 -1.0 -1.8 tRNA-dihydrouridine synthase B compare
PS417_08930 -1.0 -2.9 hypothetical protein compare
PS417_01600 -1.0 -4.4 peptidase M23 compare
PS417_04010 -0.9 -3.9 glycine/betaine ABC transporter ATP-binding protein compare
PS417_15890 -0.9 -2.0 RNA polymerase sigma factor compare
PS417_16400 -0.9 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_06945 -0.9 -1.3 membrane protein compare
PS417_14940 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_25700 -0.9 -1.4 cyclic AMP receptor protein compare
PS417_24115 -0.9 -1.4 hypothetical protein compare
PS417_19610 -0.9 -2.0 molybdenum cofactor sulfurase compare
PS417_04590 -0.9 -5.0 methyltransferase compare
PS417_26800 -0.9 -5.2 cell division protein FtsX compare
PS417_10910 -0.9 -3.0 FAD-dependent oxidoreductase compare
PS417_09330 -0.9 -2.0 NAD(P)H-quinone oxidoreductase compare
PS417_15085 -0.9 -2.1 ATPase AAA compare
PS417_16370 -0.9 -5.0 chemotaxis protein CheY compare
PS417_00455 -0.9 -1.6 hypothetical protein compare
PS417_21870 -0.9 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_02890 -0.9 -3.0 cobalt-precorrin-6X reductase compare
PS417_03930 -0.9 -5.2 thymidine phosphorylase compare
PS417_00660 -0.9 -2.2 DSBA oxidoreductase compare
PS417_08685 -0.9 -1.2 flagellar hook-length control protein FliK compare
PS417_17240 -0.9 -2.6 trigger factor compare
PS417_16490 -0.9 -1.1 cell division protein FtsK compare
PS417_02975 -0.8 -2.5 3-dehydroquinate dehydratase compare
PS417_17840 -0.8 -1.8 betaine-aldehyde dehydrogenase compare
PS417_01285 -0.8 -2.0 haloacid dehalogenase compare
PS417_13950 -0.8 -1.9 LuxR family transcriptional regulator compare
PS417_18160 -0.8 -1.7 YeeE/YedE compare
PS417_17125 -0.8 -2.2 transcriptional regulator compare
PS417_07245 -0.8 -2.0 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_08620 -0.8 -0.8 hypothetical protein compare
PS417_17450 -0.8 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_05010 -0.8 -1.1 IclR family transcriptional regulator compare
PS417_16000 -0.8 -1.4 chemotaxis protein CheY compare
PS417_26725 -0.8 -2.9 hypothetical protein compare
PS417_04025 -0.8 -3.8 glycine/betaine ABC transporter permease compare
PS417_18040 -0.8 -1.1 general secretion pathway protein GspN compare
PS417_13300 -0.8 -1.1 short-chain dehydrogenase compare
PS417_05560 -0.8 -1.9 ABC transporter compare
PS417_02255 -0.8 -1.6 lipopolysaccharide kinase compare
PS417_14880 -0.8 -1.7 thioesterase compare
PS417_00945 -0.8 -1.9 sulfate ABC transporter ATP-binding protein compare
PS417_06510 -0.8 -4.3 ATP-dependent DNA helicase DinG compare
PS417_20825 -0.8 -1.7 drug:proton antiporter compare
PS417_00355 -0.8 -2.1 metal ABC transporter permease compare
PS417_07875 -0.8 -0.7 hypothetical protein compare
PS417_02475 -0.8 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_06095 -0.8 -1.3 energy transducer TonB compare
PS417_04595 -0.8 -2.0 cell division protein MraZ compare
PS417_20855 -0.8 -1.3 hypothetical protein compare
PS417_08945 -0.8 -4.0 heat shock protein 90 compare
PS417_10720 -0.8 -2.9 chemotaxis protein CheY compare
PS417_17000 -0.8 -2.1 MerR family transcriptional regulator compare
PS417_12585 -0.8 -4.0 acriflavine resistance protein B compare
PS417_23580 -0.8 -0.8 peptidylprolyl isomerase compare
PS417_22190 -0.8 -4.1 diguanylate cyclase compare
PS417_20515 -0.8 -1.9 FMN-dependent NADH-azoreductase compare
PS417_13145 -0.8 -1.8 50S ribosomal protein L21 compare
PS417_07575 -0.8 -2.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23820 -0.8 -3.2 hypothetical protein compare
PS417_19200 -0.8 -2.5 fumarate hydratase compare
PS417_01590 -0.8 -1.6 polysaccharide deacetylase compare
PS417_00405 -0.8 -3.9 DNA polymerase I compare
PS417_10185 -0.8 -1.7 hypothetical protein compare
PS417_26335 -0.8 -1.9 BetI family transcriptional regulator compare
PS417_20875 -0.8 -2.0 chromosome segregation protein SMC compare
PS417_21760 -0.8 -1.0 hypothetical protein compare
PS417_16045 -0.8 -2.0 acyl-CoA dehydrogenase compare
PS417_14870 -0.8 -2.2 transporter compare
PS417_25390 -0.7 -3.1 MFS transporter compare
PS417_06175 -0.7 -2.7 cysteine sulfinate desulfinase compare
PS417_24605 -0.7 -1.7 thiamine-phosphate pyrophosphorylase compare
PS417_14710 -0.7 -1.1 isochorismatase compare
PS417_05815 -0.7 -2.6 recombinase RecA compare
PS417_06635 -0.7 -1.0 ferredoxin compare
PS417_02695 -0.7 -1.2 protein hupE compare
PS417_22175 -0.7 -1.1 amino acid transporter LysE compare
PS417_02270 -0.7 -2.3 carbamoyltransferase compare
PS417_22450 -0.7 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_06775 -0.7 -3.3 antibiotic transporter compare
PS417_06620 -0.7 -1.5 hypothetical protein compare
PS417_13990 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_21395 -0.7 -4.2 radical SAM protein compare
PS417_12325 -0.7 -2.8 precorrin-4 C11-methyltransferase compare
PS417_10205 -0.7 -2.5 hypothetical protein compare
PS417_12525 -0.7 -2.0 hypothetical protein compare
PS417_10870 -0.7 -2.0 GABA permease compare
PS417_20505 -0.7 -3.5 hypothetical protein compare
PS417_25975 -0.7 -3.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_27215 -0.7 -2.0 hypothetical protein compare
PS417_08125 -0.7 -0.7 prephenate dehydratase compare
PS417_00480 -0.7 -1.8 hypothetical protein compare
PS417_19500 -0.7 -1.5 antibiotic synthesis protein MbtH compare
PS417_09655 -0.7 -1.2 RNA polymerase sigma factor compare
PS417_20250 -0.7 -2.8 copper resistance protein CopC compare
PS417_17860 -0.7 -1.4 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_19520 -0.7 -1.7 transcriptional regulator compare
PS417_04440 -0.7 -1.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_11670 -0.7 -1.5 multidrug transporter MATE compare
PS417_12595 -0.7 -1.2 transcriptional regulator compare
PS417_04020 -0.7 -3.9 glycine/betaine ABC transporter substrate-binding protein compare
PS417_21400 -0.7 -2.3 TetR family transcriptional regulator compare
PS417_07985 -0.7 -0.6 AbrB family transcriptional regulator compare
PS417_17310 -0.7 -3.0 allantoate amidohydrolase compare
PS417_16845 -0.7 -1.1 monovalent cation/H+ antiporter subunit E compare
PS417_09505 -0.7 -2.0 hypothetical protein compare
PS417_09580 -0.7 -2.0 tyrosyl-trna synthetase compare
PS417_23575 -0.7 -1.3 hypothetical protein compare
PS417_00180 -0.7 -1.2 tryptophan synthase subunit alpha compare
PS417_16910 -0.7 -2.3 multidrug resistance protein B compare
PS417_18530 -0.7 -3.6 O-succinylhomoserine sulfhydrylase compare
PS417_20700 -0.7 -4.6 cbb3-type cytochrome c oxidase subunit I compare
PS417_07755 -0.7 -5.0 hypothetical protein compare
PS417_13425 -0.7 -1.0 cupin compare
PS417_11945 -0.7 -1.8 hypothetical protein compare
PS417_08205 -0.7 -1.4 acetyltransferase compare
PS417_12290 -0.6 -3.1 sulfite reductase compare
PS417_06970 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_20570 -0.6 -3.5 3-oxoacyl-ACP synthase compare
PS417_14165 -0.6 -1.5 ArsR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress 1-ethyl-3-methylimidazolium chloride in Pseudomonas simiae WCS417

For stress 1-ethyl-3-methylimidazolium chloride across organisms