Experiment set4IT062 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI

200 most important genes:

  gene name fitness t score description  
GFF4354 -7.0 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1634 -5.4 -3.7 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4647 -5.4 -9.7 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4891 -5.3 -10.7 Transport ATP-binding protein CydD compare
GFF20 -4.5 -10.1 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF4890 -4.5 -8.6 Transport ATP-binding protein CydC compare
GFF4355 -4.3 -2.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4646 -4.1 -11.0 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF2216 -4.1 -10.9 DNA polymerase I (EC 2.7.7.7) compare
GFF3667 -4.0 -3.0 Cytidylate kinase (EC 2.7.4.25) compare
GFF2946 -4.0 -3.9 RNA polymerase sigma-54 factor RpoN compare
GFF122 -4.0 -11.3 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4596 -3.8 -5.1 Ferric uptake regulation protein FUR compare
GFF4353 -3.7 -4.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF3377 -3.7 -10.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF87 -3.7 -3.7 C4-type zinc finger protein, DksA/TraR family compare
GFF1076 -3.7 -5.0 Aerobic respiration control protein arcA compare
GFF121 -3.5 -5.7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3712 -3.5 -5.5 Cyclic AMP receptor protein compare
GFF633 -3.3 -6.7 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF603 -3.2 -5.1 NfuA Fe-S protein maturation compare
GFF2389 -3.2 -3.6 Trk system potassium uptake protein TrkA compare
GFF2690 -3.1 -4.4 Peptide transport system permease protein SapC compare
GFF824 -2.8 -5.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4639 -2.8 -4.5 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF2784 -2.8 -5.7 GTP-binding and nucleic acid-binding protein YchF compare
GFF2430 -2.7 -2.9 Ferredoxin, 2Fe-2S compare
GFF276 -2.6 -7.3 Potassium uptake protein TrkH compare
GFF242 -2.6 -4.8 Magnesium and cobalt transport protein CorA compare
GFF2475 -2.5 -3.8 Ribonuclease III (EC 3.1.26.3) compare
GFF3528 -2.5 -4.2 Integration host factor alpha subunit compare
GFF3230 -2.5 -2.0 Transposase compare
GFF4600 -2.4 -5.1 SeqA protein, negative modulator of initiation of replication compare
GFF2692 -2.4 -6.9 Peptide transport system ATP-binding protein SapF compare
GFF1032 -2.4 -1.6 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF2173 -2.4 -7.0 Chromosomal replication initiator protein DnaA compare
GFF1303 -2.3 -1.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF1934 -2.3 -7.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF1750 -2.2 -4.6 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF2991 -2.2 -2.7 Tyrosine recombinase XerD compare
GFF2881 -2.1 -10.1 WzxE protein compare
GFF55 -2.1 -10.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1090 -2.1 -3.9 Chaperone protein DnaJ compare
GFF1900 -2.1 -8.5 Acetate kinase (EC 2.7.2.1) compare
GFF2434 -2.1 -1.6 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF1716 -2.0 -6.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2047 -2.0 -8.2 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1256 -1.9 -4.5 Chromosome (plasmid) partitioning protein ParA compare
GFF4652 -1.9 -5.0 Tol biopolymer transport system, TolR protein compare
GFF1882 -1.9 -9.7 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF1884 -1.9 -2.7 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF4653 -1.9 -3.1 TolA protein compare
GFF2954 -1.9 -10.1 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1312 -1.8 -3.7 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF4655 -1.8 -4.7 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1890 -1.8 -10.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF1901 -1.8 -7.1 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF1887 -1.8 -11.4 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF1886 -1.8 -9.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF4027 -1.7 -2.6 Flagellar biosynthesis protein FliS compare
GFF3669 -1.7 -1.8 Integration host factor beta subunit compare
GFF1881 -1.7 -10.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1885 -1.7 -7.4 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF1883 -1.6 -6.4 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF4026 -1.6 -3.1 Flagellar biosynthesis protein FliT compare
GFF230 -1.6 -6.8 Adenylate cyclase (EC 4.6.1.1) compare
GFF4654 -1.6 -5.8 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF1879 -1.6 -10.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2433 -1.6 -5.7 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF4634 -1.6 -5.7 Citrate synthase (si) (EC 2.3.3.1) compare
GFF1891 -1.6 -4.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF2689 -1.6 -3.0 Peptide transport system permease protein SapB compare
GFF1921 -1.6 -2.8 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF2431 -1.6 -4.4 Chaperone protein HscA compare
GFF1646 -1.5 -4.9 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) compare
GFF1880 -1.5 -7.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF635 -1.5 -5.0 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF630 -1.5 -5.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF632 -1.5 -5.6 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF4314 -1.4 -1.5 hypothetical protein compare
GFF381 -1.4 -3.2 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF1889 -1.4 -8.5 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF4637 -1.4 -10.2 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF4317 -1.4 -5.9 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF4635 -1.4 -2.2 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF4061 -1.4 -1.3 putative periplasmic protein compare
GFF391 -1.4 -2.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF3149 -1.4 -7.7 Type I secretion outer membrane protein, TolC precursor compare
GFF2948 -1.4 -4.7 PTS system nitrogen-specific IIA component, PtsN compare
GFF2688 -1.4 -5.4 Peptide transport periplasmic protein SapA compare
GFF384 -1.3 -2.0 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF2148 -1.3 -3.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF3166 -1.3 -4.7 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF2477 -1.3 -5.9 Translation elongation factor LepA compare
GFF2061 -1.3 -6.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF265 -1.3 -6.4 Twin-arginine translocation protein TatC compare
GFF4182 -1.3 -5.4 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF1953 -1.3 -3.4 Phosphohistidine phosphatase SixA compare
GFF2409 -1.2 -5.7 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF883 -1.2 -8.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF629 -1.2 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF4344 -1.2 -6.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF3862 -1.2 -4.6 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF4343 -1.2 -2.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
GFF1935 -1.2 -2.7 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
GFF386 -1.2 -4.3 Lipopolysaccharide core biosynthesis protein RfaY compare
GFF355 -1.2 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF4636 -1.1 -4.3 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF2347 -1.1 -5.8 Hydrogen peroxide-inducible genes activator compare
GFF4601 -1.1 -5.1 Phosphoglucomutase (EC 5.4.2.2) compare
GFF3548 -1.1 -4.1 3-dehydroquinate dehydratase I (EC 4.2.1.10) compare
GFF2992 -1.1 -5.2 Flavodoxin 2 compare
GFF522 -1.1 -5.8 Low-affinity inorganic phosphate transporter compare
GFF2221 -1.1 -5.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF341 -1.0 -1.1 RmbA compare
GFF2729 -1.0 -1.5 Protein YciE compare
GFF2220 -1.0 -6.4 Nitrogen regulation protein NR(I) compare
GFF2392 -1.0 -2.0 Peptide deformylase (EC 3.5.1.88) compare
GFF2882 -1.0 -5.0 Lipopolysaccharide biosynthesis protein RffA compare
GFF4342 -1.0 -4.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF2222 -1.0 -5.2 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF4288 -1.0 -5.1 AroM protein compare
GFF2880 -1.0 -5.0 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF4160 -1.0 -2.5 UPF0125 protein yfjF compare
GFF379 -1.0 -4.6 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) compare
GFF1597 -1.0 -6.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
GFF4358 -1.0 -1.5 FIG01200701: possible membrane protein compare
GFF4322 -1.0 -3.6 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF3765 -1.0 -1.2 proteinase inhibitor compare
GFF443 -1.0 -1.5 FIG01045230: hypothetical protein compare
GFF1411 -0.9 -4.9 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF357 -0.9 -2.4 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF590 -0.9 -4.7 Glycerol-3-phosphate regulon repressor, DeoR family compare
GFF3237 -0.9 -2.2 hypothetical protein compare
GFF661 -0.9 -5.1 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF2397 -0.9 -5.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1497 -0.9 -1.8 Transcription termination protein NusA compare
GFF188 -0.9 -4.5 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF587 -0.9 -4.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF2182 -0.9 -2.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF236 -0.9 -0.8 FIG00545237: hypothetical protein compare
GFF269 -0.9 -2.6 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF1223 -0.9 -1.2 CcdB toxin protein compare
GFF2895 -0.9 -1.0 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
GFF3502 -0.8 -1.0 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF3463 -0.8 -1.6 FIG00638667: hypothetical protein compare
GFF3372 -0.8 -1.9 Phosphate:acyl-ACP acyltransferase PlsX compare
GFF3133 -0.8 -3.7 Putative cell division protein precursor compare
GFF1983 -0.8 -3.6 tRNA-Arg-CCT compare
GFF3162 -0.8 -1.3 glycogen synthesis protein GlgS compare
GFF2994 -0.8 -1.4 YgfY COG2938 compare
GFF158 -0.8 -4.7 Fructose repressor FruR, LacI family compare
GFF192 -0.8 -4.0 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1095 -0.8 -1.0 Putative membrane protein compare
GFF1300 -0.8 -3.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
GFF1681 -0.8 -1.1 Ferritin-like protein 2 compare
GFF4638 -0.8 -3.2 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF390 -0.8 -1.6 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF492 -0.8 -4.0 Endoglucanase precursor (EC 3.2.1.4) compare
GFF3320 -0.8 -1.8 Transcriptional regulator CsgD for 2nd curli operon compare
GFF2806 -0.8 -2.6 Transcriptional regulator for fatty acid degradation FadR, GntR family compare
GFF2149 -0.8 -4.0 Malate dehydrogenase (EC 1.1.1.37) compare
GFF3057 -0.8 -3.2 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
GFF3632 -0.7 -1.4 Transcriptional regulator SlyA compare
GFF4641 -0.7 -1.6 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF352 -0.7 -1.1 FIG01048298: hypothetical protein compare
GFF3755 -0.7 -1.0 FIG00896318: hypothetical protein compare
GFF2566 -0.7 -3.5 Transcriptional regulator, TetR family compare
GFF1502 -0.7 -4.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF325 -0.7 -2.1 PTS system, gluconate-specific IIB component (EC 2.7.1.69) compare
GFF3058 -0.7 -3.3 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
GFF115 -0.7 -2.8 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF392 -0.7 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF3567 -0.7 -3.2 Pyruvate kinase (EC 2.7.1.40) compare
GFF1737 -0.7 -1.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF4345 -0.7 -4.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1621 -0.7 -1.6 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF110 -0.7 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2415 -0.7 -2.0 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF982 -0.7 -5.1 Putative cytoplasmic protein USSDB7A compare
GFF680 -0.7 -3.3 Molybdenum cofactor biosynthesis protein MoaC compare
GFF2915 -0.7 -1.8 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
GFF183 -0.7 -4.9 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
GFF1805 -0.7 -2.4 DNA replication terminus site-binding protein compare
GFF4584 -0.7 -3.5 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family compare
GFF876 -0.7 -5.1 UPF0131 protein YtfP compare
GFF2943 -0.7 -0.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF2824 -0.7 -1.5 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein compare
GFF2663 -0.7 -1.1 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF941 -0.7 -3.1 Ribonuclease E inhibitor RraB compare
GFF451 -0.7 -1.8 Mobile element protein compare
GFF3246 -0.7 -2.6 ATP-dependent protease La (EC 3.4.21.53) Type II compare
GFF3028 -0.7 -3.7 Transketolase (EC 2.2.1.1) compare
GFF2163 -0.7 -2.8 FIG01047222: hypothetical protein compare
GFF1863 -0.7 -0.9 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF1114 -0.7 -1.1 FIG01200701: possible membrane protein compare
GFF4346 -0.7 -3.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4774 -0.7 -1.1 FIG074102: hypothetical protein compare
GFF3495 -0.7 -2.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF4350 -0.7 -0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage phi19h1_phage across organisms