Experiment set4IT061 for Pseudomonas simiae WCS417

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 35 mM

200 most important genes:

  gene name fitness t score description  
PS417_24835 -4.2 -6.0 hypothetical protein compare
PS417_27795 -3.5 -1.6 orotate phosphoribosyltransferase compare
PS417_24585 -3.1 -10.1 AMP nucleosidase compare
PS417_24155 -3.0 -4.4 ATP-binding protein compare
PS417_27800 -2.9 -8.8 exodeoxyribonuclease III compare
PS417_23770 -2.8 -3.7 exodeoxyribonuclease V subunit alpha compare
PS417_02335 -2.6 -2.5 multidrug DMT transporter compare
PS417_21605 -2.6 -9.1 MFS transporter conserved
PS417_24705 -2.3 -3.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_13795 -2.3 -9.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13800 -2.3 -4.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22690 -2.2 -5.7 phosphogluconate dehydratase compare
PS417_02485 -2.1 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13820 -2.1 -5.4 UDP-glucose 6-dehydrogenase compare
PS417_23915 -2.1 -6.2 pantoate--beta-alanine ligase compare
PS417_21515 -2.0 -8.8 transcriptional regulator compare
PS417_11400 -2.0 -1.8 phosphoglycerate mutase compare
PS417_27585 -2.0 -2.9 diaminopimelate epimerase compare
PS417_14065 -2.0 -8.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02385 -2.0 -1.3 esterase compare
PS417_00755 -2.0 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_22565 -1.9 -1.7 formyltetrahydrofolate deformylase compare
PS417_13790 -1.9 -4.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_23995 -1.8 -1.2 preprotein translocase subunit SecG compare
PS417_21630 -1.8 -1.8 magnesium transporter compare
PS417_13805 -1.8 -7.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21625 -1.7 -1.3 DNA-binding protein compare
PS417_23380 -1.7 -3.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_05975 -1.7 -1.0 chemotaxis protein CheW compare
PS417_00285 -1.7 -6.3 carbonate dehydratase compare
PS417_04270 -1.7 -5.8 ribonuclease G compare
PS417_02975 -1.7 -4.1 3-dehydroquinate dehydratase compare
PS417_17945 -1.6 -1.4 hypothetical protein compare
PS417_04755 -1.6 -6.2 membrane protein compare
PS417_12310 -1.6 -7.6 methionine synthase compare
PS417_05815 -1.6 -5.2 recombinase RecA compare
PS417_20985 -1.6 -2.6 porin compare
PS417_16490 -1.6 -2.3 cell division protein FtsK compare
PS417_08155 -1.6 -3.1 integration host factor subunit beta compare
PS417_19305 -1.5 -4.4 acireductone dioxygenase compare
PS417_22990 -1.5 -1.5 iron dicitrate transport regulator FecR compare
PS417_18310 -1.5 -2.5 hypothetical protein compare
PS417_02210 -1.5 -5.3 diguanylate cyclase compare
PS417_19705 -1.5 -2.9 flagellar biosynthesis regulator FlhF compare
PS417_08125 -1.5 -1.2 prephenate dehydratase compare
PS417_26335 -1.5 -3.4 BetI family transcriptional regulator compare
PS417_02555 -1.5 -8.4 exoribonuclease R compare
PS417_18105 -1.5 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_08730 -1.4 -1.6 cytochrome C compare
PS417_26695 -1.4 -1.3 uracil phosphoribosyltransferase compare
PS417_20725 -1.4 -1.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_23775 -1.4 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_07640 -1.3 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23475 -1.3 -1.4 hypothetical protein compare
PS417_23950 -1.3 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_15770 -1.3 -1.4 pyridoxine 5'-phosphate oxidase compare
PS417_18545 -1.2 -3.5 cell division protein compare
PS417_03385 -1.2 -1.4 flavin reductase compare
PS417_17795 -1.2 -1.6 ABC transporter permease compare
PS417_23385 -1.2 -6.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_23370 -1.2 -3.5 protoheme IX farnesyltransferase compare
PS417_24500 -1.2 -2.9 DEAD/DEAH box helicase compare
PS417_24895 -1.2 -1.4 hypothetical protein compare
PS417_21125 -1.2 -4.1 phosphoadenosine phosphosulfate reductase compare
PS417_20855 -1.1 -1.6 hypothetical protein compare
PS417_05525 -1.1 -4.4 Fis family transcriptional regulator compare
PS417_05510 -1.1 -3.9 alpha/beta hydrolase compare
PS417_21510 -1.1 -1.3 histidine kinase compare
PS417_13145 -1.1 -2.0 50S ribosomal protein L21 compare
PS417_06245 -1.1 -2.2 zinc metallopeptidase RseP compare
PS417_05520 -1.1 -5.8 histidine kinase compare
PS417_16825 -1.1 -2.7 membrane protein compare
PS417_02160 -1.1 -1.1 hypothetical protein compare
PS417_28515 -1.1 -2.8 16S rRNA methyltransferase compare
PS417_27935 -1.0 -1.3 type VI secretion protein compare
PS417_16715 -1.0 -1.5 DoxX family protein compare
PS417_04595 -1.0 -2.4 cell division protein MraZ compare
PS417_04290 -1.0 -3.1 hypothetical protein compare
PS417_15780 -1.0 -2.4 membrane protein compare
PS417_05505 -1.0 -4.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_10100 -1.0 -2.2 hypothetical protein compare
PS417_24935 -1.0 -1.0 hypothetical protein compare
PS417_24535 -1.0 -1.3 membrane protein compare
PS417_19675 -1.0 -3.6 chemotaxis protein CheY compare
PS417_06370 -1.0 -1.2 cold-shock protein compare
PS417_11485 -1.0 -1.8 AraC family transcriptional regulator compare
PS417_26900 -0.9 -1.8 L-cystine transporter tcyP compare
PS417_11925 -0.9 -1.9 hypothetical protein compare
PS417_19650 -0.9 -3.2 chemotaxis protein CheW compare
PS417_05165 -0.9 -1.7 cytosol aminopeptidase compare
PS417_25315 -0.9 -4.2 membrane protein compare
PS417_11075 -0.9 -1.6 hydroxypyruvate isomerase compare
PS417_16815 -0.9 -1.8 acyl-CoA dehydrogenase compare
PS417_28405 -0.9 -2.7 hypothetical protein compare
PS417_18470 -0.9 -2.2 hypothetical protein compare
PS417_20705 -0.9 -3.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_00180 -0.9 -2.2 tryptophan synthase subunit alpha compare
PS417_21480 -0.9 -1.0 23S rRNA pseudouridylate synthase compare
PS417_01600 -0.9 -2.3 peptidase M23 compare
PS417_09325 -0.9 -2.4 peptidase S41 compare
PS417_14655 -0.9 -1.1 lysine transporter LysE compare
PS417_17000 -0.9 -1.8 MerR family transcriptional regulator compare
PS417_22175 -0.9 -1.4 amino acid transporter LysE compare
PS417_22005 -0.9 -2.6 epimerase compare
PS417_02425 -0.9 -2.0 thiosulfate sulfurtransferase compare
PS417_02475 -0.9 -1.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_03895 -0.9 -2.0 methyltransferase compare
PS417_24615 -0.8 -0.5 hypothetical protein compare
PS417_17125 -0.8 -2.9 transcriptional regulator compare
PS417_28140 -0.8 -3.4 asparaginase compare
PS417_23910 -0.8 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_28225 -0.8 -1.2 hypothetical protein compare
PS417_02630 -0.8 -1.7 NAD synthetase compare
PS417_04740 -0.8 -3.8 RND transporter compare
PS417_08025 -0.8 -1.1 acetylornithine aminotransferase compare
PS417_23050 -0.8 -2.7 trehalose PTS system, EII-BC components TreB (from data) compare
PS417_25295 -0.8 -2.1 hypothetical protein compare
PS417_07000 -0.8 -2.2 hypothetical protein compare
PS417_04305 -0.8 -1.1 aspartate ammonia-lyase compare
PS417_09600 -0.8 -2.8 glycosyl transferase family 1 compare
PS417_17190 -0.8 -2.9 MarR family transcriptional regulator compare
PS417_17215 -0.8 -2.7 peptidylprolyl isomerase compare
PS417_10720 -0.8 -4.0 chemotaxis protein CheY compare
PS417_04750 -0.8 -3.4 hypothetical protein compare
PS417_20785 -0.8 -1.8 transcriptional regulator compare
PS417_23765 -0.8 -1.6 hypothetical protein compare
PS417_23820 -0.8 -3.2 hypothetical protein compare
PS417_17685 -0.8 -1.7 allantoate amidohydrolase compare
PS417_20700 -0.8 -5.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_16920 -0.8 -2.5 multidrug RND transporter compare
PS417_07985 -0.8 -0.7 AbrB family transcriptional regulator compare
PS417_21690 -0.8 -2.8 N-succinylarginine dihydrolase compare
PS417_22780 -0.8 -1.9 XRE family transcriptional regulator compare
PS417_04745 -0.8 -4.1 fusaric acid resistance protein compare
PS417_15745 -0.8 -1.3 lipid carrier protein compare
PS417_05500 -0.8 -2.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_05985 -0.7 -1.7 chemotaxis protein CheY compare
PS417_22715 -0.7 -1.0 heme oxygenase compare
PS417_27870 -0.7 -1.7 ATP-dependent DNA helicase RecG compare
PS417_27555 -0.7 -2.1 DNA-binding protein compare
PS417_19480 -0.7 -2.8 aminopeptidase compare
PS417_16370 -0.7 -3.5 chemotaxis protein CheY compare
PS417_22795 -0.7 -1.5 exclusion suppressor FxsA compare
PS417_00195 -0.7 -1.4 hypothetical protein compare
PS417_13510 -0.7 -0.9 polyketide cyclase compare
PS417_01115 -0.7 -1.1 serine acetyltransferase compare
PS417_22165 -0.7 -2.9 LysR family transcriptional regulator compare
PS417_04590 -0.7 -2.4 methyltransferase compare
PS417_28190 -0.7 -2.0 amino acid ABC transporter substrate-binding protein compare
PS417_27045 -0.7 -1.9 ATPase compare
PS417_00375 -0.7 -1.9 membrane protein compare
PS417_18025 -0.7 -2.4 cytochrome C compare
PS417_27475 -0.7 -1.4 membrane protein compare
PS417_10145 -0.7 -1.7 hypothetical protein compare
PS417_24800 -0.7 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_01570 -0.7 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07995 -0.7 -3.4 LOG family protein compare
PS417_16180 -0.7 -1.9 MFS transporter compare
PS417_20030 -0.7 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_24100 -0.7 -4.0 transcriptional regulator PdhR compare
PS417_19850 -0.7 -3.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_19195 -0.7 -1.7 hypothetical protein compare
PS417_15070 -0.7 -2.7 hypothetical protein compare
PS417_17545 -0.7 -1.7 2-oxoisovalerate dehydrogenase compare
PS417_16855 -0.7 -1.3 cation:proton antiporter compare
PS417_27380 -0.7 -0.8 GntR family transcriptional regulator compare
PS417_21595 -0.7 -2.2 flagellar biosynthesis protein FlgN compare
PS417_13140 -0.7 -0.9 oxidoreductase compare
PS417_07120 -0.7 -2.6 RNA polymerase sigma-H factor compare
PS417_23455 -0.7 -1.5 LrgA compare
PS417_14600 -0.7 -1.6 bleomycin resistance protein compare
PS417_22350 -0.7 -1.0 Fis family transcriptional regulator compare
PS417_17755 -0.7 -1.1 hypothetical protein compare
PS417_21755 -0.7 -2.9 hypothetical protein compare
PS417_04735 -0.7 -2.9 LysR family transcriptional regulator compare
PS417_26850 -0.7 -0.6 twin-arginine translocation pathway signal protein compare
PS417_00355 -0.7 -1.7 metal ABC transporter permease compare
PS417_07840 -0.6 -2.3 hypothetical protein compare
PS417_00225 -0.6 -2.3 hypothetical protein compare
PS417_10860 -0.6 -1.1 flagellar basal body rod protein FlgG compare
PS417_18490 -0.6 -1.5 hypothetical protein compare
PS417_02950 -0.6 -1.3 tRNA-dihydrouridine synthase B compare
PS417_15285 -0.6 -0.6 type VI secretion protein compare
PS417_26800 -0.6 -2.7 cell division protein FtsX compare
PS417_16080 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_04315 -0.6 -2.5 superoxide dismutase compare
PS417_27135 -0.6 -0.5 glutamine synthetase compare
PS417_03260 -0.6 -1.4 5S ribosomal RNA compare
PS417_25985 -0.6 -1.2 dethiobiotin synthetase compare
PS417_23045 -0.6 -1.6 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_27520 -0.6 -2.0 uroporphyrin-III methyltransferase compare
PS417_11535 -0.6 -1.4 nicotinate phosphoribosyltransferase compare
PS417_14710 -0.6 -1.0 isochorismatase compare
PS417_01195 -0.6 -0.8 RNA-binding protein S4 compare
PS417_16720 -0.6 -0.7 membrane protein compare
PS417_14645 -0.6 -3.3 hypothetical protein compare
PS417_04835 -0.6 -1.5 hemolysin D compare
PS417_02805 -0.6 -1.1 urease subunit gamma compare
PS417_07890 -0.6 -2.0 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas simiae WCS417

For stress 1-ethyl-3-methylimidazolium acetate across organisms