Experiment set4IT060 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

200 most important genes:

  gene name fitness t score description  
GFF4647 -6.0 -4.2 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF633 -6.0 -3.6 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF4646 -5.4 -9.0 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF4890 -5.0 -3.4 Transport ATP-binding protein CydC compare
GFF3324 -4.8 -1.2 putative periplasmic protein compare
GFF4354 -4.8 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4891 -4.8 -7.3 Transport ATP-binding protein CydD compare
GFF1076 -4.6 -2.1 Aerobic respiration control protein arcA compare
GFF4766 -4.4 -1.1 Invasion protein invH precursor compare
GFF1095 -4.3 -1.0 Putative membrane protein compare
GFF2434 -4.0 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF1385 -3.9 -0.9 hypothetical protein compare
GFF2943 -3.8 -1.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF1634 -3.7 -3.4 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF1900 -3.7 -8.6 Acetate kinase (EC 2.7.2.1) compare
GFF4353 -3.7 -3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2173 -3.7 -5.2 Chromosomal replication initiator protein DnaA compare
GFF603 -3.6 -3.6 NfuA Fe-S protein maturation compare
GFF3712 -3.6 -3.8 Cyclic AMP receptor protein compare
GFF824 -3.6 -3.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4355 -3.5 -1.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3722 -3.5 -1.2 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF4639 -3.5 -1.8 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF1750 -3.5 -2.4 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF2430 -3.4 -1.4 Ferredoxin, 2Fe-2S compare
GFF391 -3.3 -2.1 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF1303 -3.3 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF1716 -3.2 -6.0 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF948 -3.1 -2.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF4596 -3.0 -2.2 Ferric uptake regulation protein FUR compare
GFF2784 -3.0 -3.1 GTP-binding and nucleic acid-binding protein YchF compare
GFF2400 -2.9 -1.8 hypothetical protein compare
GFF20 -2.9 -6.2 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF3570 -2.9 -1.2 FIG074102: hypothetical protein compare
GFF2863 -2.9 -1.2 FIG074102: hypothetical protein compare
GFF55 -2.8 -10.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF4600 -2.8 -3.9 SeqA protein, negative modulator of initiation of replication compare
GFF635 -2.8 -4.2 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF3667 -2.8 -1.8 Cytidylate kinase (EC 2.7.4.25) compare
GFF2477 -2.7 -5.4 Translation elongation factor LepA compare
GFF1499 -2.7 -3.2 Ribosome-binding factor A compare
GFF87 -2.6 -1.8 C4-type zinc finger protein, DksA/TraR family compare
GFF1880 -2.6 -9.4 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1883 -2.6 -7.9 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF2466 -2.6 -1.1 Sialic acid utilization regulator, RpiR family compare
GFF4162 -2.5 -2.7 DNA repair protein RecN compare
GFF265 -2.5 -5.5 Twin-arginine translocation protein TatC compare
GFF2991 -2.5 -1.6 Tyrosine recombinase XerD compare
GFF4182 -2.4 -6.7 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF360 -2.4 -1.0 hypothetical protein compare
GFF1934 -2.4 -4.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3555 -2.4 -1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF4305 -2.3 -3.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
GFF4027 -2.3 -1.5 Flagellar biosynthesis protein FliS compare
GFF4653 -2.3 -2.6 TolA protein compare
GFF1300 -2.3 -6.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
GFF1901 -2.3 -5.0 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF3166 -2.3 -4.1 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF1610 -2.3 -1.3 hypothetical protein compare
GFF276 -2.2 -4.7 Potassium uptake protein TrkH compare
GFF1119 -2.2 -3.6 Na+/H+ antiporter NhaA type compare
GFF2946 -2.2 -3.3 RNA polymerase sigma-54 factor RpoN compare
GFF1891 -2.2 -2.4 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF2475 -2.2 -1.9 Ribonuclease III (EC 3.1.26.3) compare
GFF1032 -2.1 -0.7 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF1584 -2.1 -1.1 Ribonucleotide reduction protein NrdI compare
GFF3632 -2.1 -2.3 Transcriptional regulator SlyA compare
GFF1930 -2.1 -1.4 DedD protein compare
GFF1885 -2.1 -7.3 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF1887 -2.1 -7.7 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF122 -2.1 -7.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF3414 -2.1 -5.6 Sensor protein PhoQ (EC 2.7.13.3) compare
GFF1040 -2.1 -1.2 Putative deoxyribonuclease YjjV compare
GFF4218 -2.0 -1.1 hypothetical protein compare
GFF1256 -2.0 -2.7 Chromosome (plasmid) partitioning protein ParA compare
GFF2808 -2.0 -6.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF2047 -2.0 -7.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1879 -2.0 -7.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF3315 -2.0 -1.2 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF4344 -2.0 -4.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF629 -2.0 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF3028 -2.0 -7.4 Transketolase (EC 2.2.1.1) compare
GFF1884 -2.0 -1.3 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF1981 -2.0 -1.0 FIG00638165: hypothetical protein compare
GFF3453 -2.0 -1.6 Periplasmic chorismate mutase I precursor (EC 5.4.99.5) compare
GFF1882 -2.0 -5.5 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF261 -2.0 -1.1 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF2148 -1.9 -2.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF3648 -1.9 -1.3 tRNA-Arg-TCT compare
GFF2954 -1.9 -7.9 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF400 -1.9 -1.1 Glutaredoxin 3 (Grx3) compare
GFF1889 -1.9 -8.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF2864 -1.9 -1.3 Mobile element protein compare
GFF308 -1.9 -2.4 probable membrane protein YPO2654 compare
GFF2433 -1.9 -4.3 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF1168 -1.9 -1.0 IncF plasmid conjugative transfer protein TrbI compare
GFF121 -1.8 -2.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4738 -1.8 -2.5 Type III secretion system protein compare
GFF1890 -1.8 -7.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF4634 -1.8 -5.5 Citrate synthase (si) (EC 2.3.3.1) compare
GFF1953 -1.8 -2.6 Phosphohistidine phosphatase SixA compare
GFF1090 -1.8 -2.7 Chaperone protein DnaJ compare
GFF587 -1.8 -3.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF3506 -1.8 -1.3 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF2216 -1.8 -3.6 DNA polymerase I (EC 2.7.7.7) compare
GFF4643 -1.8 -1.1 hypothetical protein compare
GFF4636 -1.7 -3.7 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF1411 -1.7 -3.9 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF1079 -1.7 -1.0 Homoserine kinase (EC 2.7.1.39) compare
GFF1668 -1.7 -1.6 Positive regulator of CheA protein activity (CheW) compare
GFF1881 -1.7 -7.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF242 -1.7 -2.5 Magnesium and cobalt transport protein CorA compare
GFF2689 -1.7 -2.9 Peptide transport system permease protein SapB compare
GFF801 -1.7 -1.3 FIG01047026: hypothetical protein compare
GFF4652 -1.7 -2.5 Tol biopolymer transport system, TolR protein compare
GFF3149 -1.6 -5.0 Type I secretion outer membrane protein, TolC precursor compare
GFF812 -1.6 -2.1 Phage minor tail protein compare
GFF1886 -1.6 -6.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF3415 -1.6 -4.4 Transcriptional regulatory protein PhoP compare
GFF4270 -1.6 -0.6 FIG00637869: hypothetical protein compare
GFF342 -1.6 -0.8 FIG01046502: hypothetical protein compare
GFF1659 -1.5 -1.8 Flagellar protein FlhE compare
GFF1334 -1.5 -0.7 Uncharacterized protein YohL compare
GFF2816 -1.5 -1.7 Septum site-determining protein MinC compare
GFF2505 -1.5 -1.2 Multiple antibiotic resistance protein MarB compare
GFF2948 -1.5 -2.5 PTS system nitrogen-specific IIA component, PtsN compare
GFF2623 -1.5 -0.9 Putative inner membrane protein compare
GFF3621 -1.5 -2.5 Glutaredoxin-related protein compare
GFF4288 -1.5 -5.4 AroM protein compare
GFF3938 -1.5 -1.7 Ethanolamine utilization protein similar to PduL compare
GFF3133 -1.5 -4.2 Putative cell division protein precursor compare
GFF1192 -1.5 -0.8 putative cytoplasmic protein compare
GFF341 -1.5 -0.7 RmbA compare
GFF169 -1.5 -1.6 Sugar-phosphate stress protein SgrT (embedded in SgrS) compare
GFF522 -1.5 -4.4 Low-affinity inorganic phosphate transporter compare
GFF4655 -1.5 -1.9 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF443 -1.5 -1.0 FIG01045230: hypothetical protein compare
GFF4637 -1.5 -7.8 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF1921 -1.5 -1.4 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF906 -1.5 -0.7 FIG01047835: hypothetical protein compare
GFF4654 -1.5 -4.6 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF1935 -1.4 -2.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
GFF1063 -1.4 -2.1 Phosphoglycerate mutase (EC 5.4.2.1) compare
GFF2692 -1.4 -3.6 Peptide transport system ATP-binding protein SapF compare
GFF2773 -1.4 -3.5 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF632 -1.4 -3.6 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF4096 -1.4 -1.1 FIG01047254: hypothetical protein compare
GFF1312 -1.4 -1.8 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF230 -1.4 -5.2 Adenylate cyclase (EC 4.6.1.1) compare
GFF1792 -1.4 -1.4 Spermidine export protein MdtJ compare
GFF4312 -1.4 -2.7 hypothetical protein compare
GFF2785 -1.4 -1.2 FIG01045804: hypothetical protein compare
GFF3862 -1.4 -3.8 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1415 -1.4 -0.5 UPF0337 protein yjbJ compare
GFF2949 -1.4 -2.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF2031 -1.4 -0.7 FIG01046611: hypothetical protein compare
GFF3287 -1.4 -2.6 FIG01045683: hypothetical protein compare
GFF2431 -1.4 -1.6 Chaperone protein HscA compare
GFF2881 -1.3 -5.4 WzxE protein compare
GFF973 -1.3 -1.4 FIG074102: hypothetical protein compare
GFF1950 -1.3 -1.6 Chorismate synthase (EC 4.2.3.5) compare
GFF110 -1.3 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF4635 -1.3 -1.8 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF2154 -1.3 -1.1 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF834 -1.3 -2.2 FIG006163: hypothetical protein compare
GFF571 -1.3 -1.9 Gluconokinase (EC 2.7.1.12) compare
GFF1615 -1.3 -1.2 phage-tail assembly-like protein compare
GFF2478 -1.3 -0.9 leucine-rich repeat protein compare
GFF2249 -1.3 -2.0 Putative merR family bacterial regulatory protein compare
GFF4342 -1.3 -3.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF4866 -1.3 -1.0 probable lipoprotein compare
GFF1805 -1.3 -2.1 DNA replication terminus site-binding protein compare
GFF3623 -1.2 -0.9 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF1736 -1.2 -0.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF1046 -1.2 -3.6 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
GFF1239 -1.2 -0.8 Gifsy-2 prophage lysozyme( EC:3.2.1.17 ) compare
GFF3591 -1.2 -1.8 Secretion system effector SseD compare
GFF2092 -1.2 -1.7 FIG074102: hypothetical protein compare
GFF4702 -1.2 -1.1 Arabinose 5-phosphate isomerase (EC 5.3.1.13) compare
GFF4374 -1.2 -0.8 LSU ribosomal protein L36p compare
GFF3449 -1.2 -1.3 Putative arylsulfatase regulatory protein compare
GFF876 -1.2 -6.4 UPF0131 protein YtfP compare
GFF4346 -1.2 -4.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1538 -1.2 -1.3 FIG01045316: hypothetical protein compare
GFF3589 -1.2 -2.5 Secretion system chaparone SscA compare
GFF883 -1.2 -4.9 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF573 -1.1 -0.7 FIG01046423: hypothetical protein compare
GFF3700 -1.1 -1.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF4759 -1.1 -2.0 Surface presentation of antigens protein SpaM compare
GFF4317 -1.1 -2.3 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF1781 -1.1 -2.0 Putative binding-protein-dependent transport system compare
GFF1252 -1.1 -1.5 hypothetical protein compare
GFF381 -1.1 -4.2 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF2862 -1.1 -1.7 FIG01046381: hypothetical protein compare
GFF4605 -1.1 -0.6 hypothetical protein compare
GFF355 -1.1 -1.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF472 -1.1 -1.3 hypothetical protein compare
GFF3433 -1.1 -1.1 FIG074102: hypothetical protein compare
GFF4822 -1.1 -1.6 Queuosine biosynthesis QueD, PTPS-I compare
GFF3845 -1.1 -1.5 putative cytoplasmic protein compare


Specific Phenotypes

For 1 genes in this experiment

For phage ES18h1_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage ES18h1_phage across organisms