Experiment set4IT055 for Pseudomonas simiae WCS417

Compare to:

LB with Choline chloride 300 mM

200 most important genes:

  gene name fitness t score description  
PS417_08220 -4.9 -1.5 epimerase compare
PS417_08125 -3.7 -1.6 prephenate dehydratase compare
PS417_27870 -3.2 -4.9 ATP-dependent DNA helicase RecG compare
PS417_23770 -3.1 -3.6 exodeoxyribonuclease V subunit alpha compare
PS417_27795 -3.0 -1.6 orotate phosphoribosyltransferase compare
PS417_05975 -2.9 -1.3 chemotaxis protein CheW compare
PS417_24155 -2.8 -4.5 ATP-binding protein compare
PS417_15095 -2.5 -3.5 hypothetical protein compare
PS417_22565 -2.5 -2.0 formyltetrahydrofolate deformylase compare
PS417_15105 -2.4 -10.9 membrane protein compare
PS417_24705 -2.3 -5.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_04595 -2.3 -3.9 cell division protein MraZ compare
PS417_05985 -2.3 -4.8 chemotaxis protein CheY compare
PS417_04650 -2.3 -1.4 D-alanine--D-alanine ligase compare
PS417_15110 -2.3 -11.2 protein BatD compare
PS417_02950 -2.2 -3.1 tRNA-dihydrouridine synthase B compare
PS417_23580 -2.2 -1.7 peptidylprolyl isomerase compare
PS417_21655 -2.2 -1.8 aspartate kinase compare
PS417_06245 -2.1 -3.2 zinc metallopeptidase RseP compare
PS417_02210 -2.0 -10.5 diguanylate cyclase compare
PS417_26345 -2.0 -5.9 choline dehydrogenase conserved
PS417_23995 -1.9 -1.3 preprotein translocase subunit SecG compare
PS417_21625 -1.9 -1.4 DNA-binding protein compare
PS417_12565 -1.9 -2.4 2-dehydro-3-deoxygluconokinase compare
PS417_23950 -1.8 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_23025 -1.8 -8.9 murein transglycosylase compare
PS417_02475 -1.8 -4.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_19350 -1.8 -5.2 GTP cyclohydrolase compare
PS417_08135 -1.8 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17240 -1.8 -4.6 trigger factor compare
PS417_07095 -1.7 -7.7 histidine kinase compare
PS417_22445 -1.7 -4.9 ATP-dependent DNA helicase RuvB compare
PS417_08730 -1.7 -2.2 cytochrome C compare
PS417_00405 -1.7 -7.2 DNA polymerase I compare
PS417_06600 -1.6 -1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26985 -1.6 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15085 -1.6 -5.5 ATPase AAA compare
PS417_20985 -1.6 -4.1 porin compare
PS417_27865 -1.6 -4.2 LysR family transcriptional regulator compare
PS417_03930 -1.6 -9.1 thymidine phosphorylase compare
PS417_20855 -1.6 -1.9 hypothetical protein compare
PS417_15100 -1.6 -2.3 BatB protein compare
PS417_10405 -1.5 -1.4 filamentous hemagglutinin compare
PS417_02555 -1.5 -11.6 exoribonuclease R compare
PS417_15090 -1.5 -1.3 hypothetical protein compare
PS417_18310 -1.5 -1.6 hypothetical protein compare
PS417_16490 -1.5 -2.3 cell division protein FtsK compare
PS417_15465 -1.5 -3.0 carboxynorspermidine decarboxylase compare
PS417_05815 -1.5 -4.5 recombinase RecA compare
PS417_01600 -1.4 -7.3 peptidase M23 compare
PS417_00045 -1.4 -2.6 glycerol acyltransferase compare
PS417_27800 -1.4 -6.4 exodeoxyribonuclease III compare
PS417_20880 -1.4 -2.5 GntR family transcriptional regulator compare
PS417_26340 -1.3 -5.5 betaine-aldehyde dehydrogenase conserved
PS417_27195 -1.3 -1.6 N-acetylglutamate synthase compare
PS417_13425 -1.3 -1.4 cupin compare
PS417_02225 -1.3 -2.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08190 -1.2 -8.3 membrane protein compare
PS417_17945 -1.2 -1.2 hypothetical protein compare
PS417_19625 -1.2 -4.5 histidine kinase compare
PS417_26800 -1.2 -6.7 cell division protein FtsX compare
PS417_16555 -1.2 -1.4 cupin compare
PS417_19605 -1.2 -1.6 hypothetical protein compare
PS417_03260 -1.2 -1.8 5S ribosomal RNA compare
PS417_08155 -1.2 -1.0 integration host factor subunit beta compare
PS417_23170 -1.2 -2.0 FeS assembly protein IscX compare
PS417_06895 -1.2 -2.4 DNA-binding protein compare
PS417_22840 -1.1 -2.2 tRNA-Met compare
PS417_00180 -1.1 -2.7 tryptophan synthase subunit alpha compare
PS417_13895 -1.1 -3.4 chemotaxis protein CheB compare
PS417_01435 -1.1 -1.4 hypothetical protein compare
PS417_20585 -1.1 -5.3 chemotaxis protein compare
PS417_08205 -1.1 -2.5 acetyltransferase compare
PS417_08200 -1.1 -2.5 hypothetical protein compare
PS417_02270 -1.1 -4.5 carbamoyltransferase compare
PS417_19635 -1.1 -7.6 lipid kinase compare
PS417_08185 -1.1 -4.2 glycosyl transferase compare
PS417_26990 -1.1 -1.5 RNA pyrophosphohydrolase compare
PS417_27245 -1.1 -4.0 aminotransferase DegT compare
PS417_19630 -1.1 -1.4 LuxR family transcriptional regulator compare
PS417_24500 -1.1 -3.5 DEAD/DEAH box helicase compare
PS417_02255 -1.1 -2.5 lipopolysaccharide kinase compare
PS417_18545 -1.1 -3.3 cell division protein compare
PS417_12505 -1.1 -2.8 peptidase compare
PS417_08230 -1.0 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21630 -1.0 -2.2 magnesium transporter compare
PS417_13140 -1.0 -1.8 oxidoreductase compare
PS417_03560 -1.0 -1.5 GTP-binding protein compare
PS417_22450 -1.0 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_23095 -1.0 -1.1 exodeoxyribonuclease compare
PS417_14280 -1.0 -2.0 hypothetical protein compare
PS417_19415 -1.0 -2.2 allantoinase compare
PS417_06205 -1.0 -6.5 methionine aminopeptidase compare
PS417_22190 -1.0 -5.8 diguanylate cyclase compare
PS417_22350 -1.0 -1.4 Fis family transcriptional regulator compare
PS417_00650 -1.0 -0.9 LysR family transcriptional regulator compare
PS417_00510 -1.0 -0.8 membrane protein compare
PS417_14305 -1.0 -2.4 hydroxyproline-2-epimerase compare
PS417_15470 -1.0 -4.1 saccharopine dehydrogenase compare
PS417_08025 -1.0 -1.4 acetylornithine aminotransferase compare
PS417_16720 -0.9 -1.0 membrane protein compare
PS417_06375 -0.9 -0.9 deoxycytidine triphosphate deaminase compare
PS417_23915 -0.9 -3.0 pantoate--beta-alanine ligase compare
PS417_22640 -0.9 -2.3 cytochrome C biogenesis protein CcmE compare
PS417_12355 -0.9 -1.8 magnesium chelatase compare
PS417_19275 -0.9 -1.2 hypothetical protein compare
PS417_10535 -0.9 -3.7 hypothetical protein compare
PS417_22375 -0.9 -0.8 cold-shock protein compare
PS417_22205 -0.9 -5.4 potassium transporter TrkH compare
PS417_18540 -0.9 -2.5 colicin V production CvpA compare
PS417_01285 -0.9 -1.6 haloacid dehalogenase compare
PS417_02915 -0.9 -3.4 precorrin-3B C17-methyltransferase compare
PS417_22855 -0.9 -3.6 ssDNA exonuclease RecJ compare
PS417_11770 -0.9 -1.3 pyruvate dehydrogenase compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_11410 -0.9 -1.6 phospholipase compare
PS417_08180 -0.9 -5.4 glycosyl transferase compare
PS417_05830 -0.9 -2.2 hypothetical protein compare
PS417_02805 -0.8 -1.1 urease subunit gamma compare
PS417_16815 -0.8 -1.5 acyl-CoA dehydrogenase compare
PS417_00920 -0.8 -3.3 diguanylate cyclase compare
PS417_27115 -0.8 -5.5 putrescine ABC transporter, ATPase component (from data) compare
PS417_00080 -0.8 -5.4 potassium transporter peripheral membrane component compare
PS417_17000 -0.8 -1.7 MerR family transcriptional regulator compare
PS417_26335 -0.8 -1.3 BetI family transcriptional regulator compare
PS417_07840 -0.8 -2.0 hypothetical protein compare
PS417_25030 -0.8 -1.8 hypothetical protein compare
PS417_13165 -0.8 -1.5 peroxidase compare
PS417_27585 -0.8 -1.2 diaminopimelate epimerase compare
PS417_03005 -0.8 -4.5 arginine decarboxylase compare
PS417_08195 -0.8 -4.2 hypothetical protein compare
PS417_08410 -0.8 -1.5 hypothetical protein compare
PS417_02895 -0.8 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_16320 -0.8 -1.0 protein tyrosine phosphatase compare
PS417_26605 -0.8 -1.0 malonate decarboxylase subunit beta compare
PS417_17125 -0.8 -2.6 transcriptional regulator compare
PS417_19675 -0.8 -2.4 chemotaxis protein CheY compare
PS417_14240 -0.8 -3.0 isochorismatase compare
PS417_05200 -0.8 -1.3 DNA recombination protein RecO compare
PS417_24370 -0.8 -0.6 (2Fe-2S)-binding protein compare
PS417_15675 -0.8 -2.1 chemotaxis protein compare
PS417_00450 -0.8 -2.3 chemotaxis protein CheY compare
PS417_15655 -0.8 -2.2 hypothetical protein compare
PS417_13055 -0.8 -1.7 aminotransferase compare
PS417_17860 -0.8 -2.2 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_08165 -0.8 -5.1 UDP-glucose 4-epimerase compare
PS417_01095 -0.8 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_11705 -0.8 -3.2 cyclic peptide transporter compare
PS417_05695 -0.8 -2.5 transcriptional regulator compare
PS417_26370 -0.7 -2.3 RNA helicase compare
PS417_06680 -0.7 -4.3 nuclease PIN compare
PS417_19615 -0.7 -3.5 chemotaxis protein CheW compare
PS417_26730 -0.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_20700 -0.7 -5.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_14940 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_24580 -0.7 -3.4 pseudouridine synthase compare
PS417_25390 -0.7 -3.7 MFS transporter compare
PS417_11760 -0.7 -1.8 Fis family transcriptional regulator compare
PS417_13300 -0.7 -1.8 short-chain dehydrogenase compare
PS417_19520 -0.7 -1.5 transcriptional regulator compare
PS417_21830 -0.7 -1.8 TetR family transcriptional regulator compare
PS417_10480 -0.7 -0.9 glutathione S-transferase compare
PS417_11180 -0.7 -1.8 TetR family transcriptional regulator compare
PS417_24385 -0.7 -2.8 tRNA (uracil-5-)-methyltransferase compare
PS417_26770 -0.7 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_02560 -0.7 -1.2 23S rRNA methyltransferase compare
PS417_06735 -0.7 -1.3 3-oxoadipate enol-lactonase compare
PS417_02165 -0.7 -1.8 ZapA compare
PS417_08245 -0.7 -0.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04920 -0.7 -1.4 GntR family transcriptional regulator compare
PS417_09655 -0.7 -1.0 RNA polymerase sigma factor compare
PS417_23575 -0.7 -1.2 hypothetical protein compare
PS417_20575 -0.7 -4.5 ATP-dependent helicase HrpA compare
PS417_17560 -0.7 -2.8 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_14835 -0.7 -2.4 amidase compare
PS417_13510 -0.7 -0.8 polyketide cyclase compare
PS417_21480 -0.7 -1.2 23S rRNA pseudouridylate synthase compare
PS417_15285 -0.7 -0.6 type VI secretion protein compare
PS417_21845 -0.7 -1.4 membrane protein compare
PS417_05365 -0.7 -1.0 FAD-binding protein compare
PS417_20800 -0.7 -3.5 recombination protein RecR compare
PS417_17685 -0.7 -1.1 allantoate amidohydrolase compare
PS417_18560 -0.7 -3.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01340 -0.7 -2.2 agmatine deiminase compare
PS417_00825 -0.7 -1.4 recombinase RecF compare
PS417_04585 -0.7 -0.8 hypothetical protein compare
PS417_14160 -0.7 -1.6 hypothetical protein compare
PS417_07000 -0.7 -2.3 hypothetical protein compare
PS417_05840 -0.7 -1.9 LuxR family transcriptional regulator compare
PS417_00355 -0.7 -1.8 metal ABC transporter permease compare
PS417_08430 -0.7 -2.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_13660 -0.6 -1.6 AsnC family transcriptional regulator compare
PS417_20705 -0.6 -2.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_10060 -0.6 -1.3 hypothetical protein compare
PS417_02775 -0.6 -2.4 heat-shock protein compare
PS417_23820 -0.6 -2.9 hypothetical protein compare
PS417_00175 -0.6 -1.0 CigR compare
PS417_13735 -0.6 -0.7 hypothetical protein compare
PS417_07560 -0.6 -1.1 universal stress protein UspA compare


Specific Phenotypes

For 6 genes in this experiment

For stress Choline chloride in Pseudomonas simiae WCS417

For stress Choline chloride across organisms