Experiment set4IT055 for Agrobacterium fabrum C58

Compare to:

R2A with Paraquat dichloride 0.75 mM

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.5 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1446 -3.6 -2.3 two component response regulator compare
Atu0184 -3.2 -3.6 glucokinase compare
Atu2684 -3.2 -2.1 hypothetical protein compare
Atu2712 -2.7 -8.0 ABC transporter, nucleotide binding/ATPase protein (thiamine) compare
Atu0434 -2.7 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2713 -2.3 -11.5 ABC transporter, membrane spanning protein (thiamine) compare
Atu0876 -2.2 -2.3 superoxide dismutase compare
Atu2714 -2.2 -9.8 ABC transporter, substrate binding protein (thiamine) compare
Atu0942 -2.0 -10.1 MFS permease conserved
Atu4773 -1.9 -2.1 two component response regulator compare
Atu1307 -1.9 -4.9 dihydroorotase compare
Atu1688 -1.6 -4.0 indole-3-glycerol-phosphate synthase compare
Atu4502 -1.5 -4.6 cobalamin synthesis protein compare
Atu0040 -1.5 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2710 -1.4 -5.8 hypothetical protein compare
Atu0769 -1.3 -1.3 protoheme IX farnesyltransferase compare
Atu3469 -1.3 -2.5 phosphoglyceromutase compare
Atu2464 -1.2 -2.2 formyltetrahydrofolate deformylase compare
Atu1687 -1.2 -4.7 anthranilate phosphoribosyltransferase compare
Atu2238 -1.2 -6.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0361 -1.2 -2.3 transcriptional regulator compare
Atu0767 -1.2 -4.8 cytochrome c oxidase subunit II compare
Atu2787 -1.2 -1.2 hypothetical protein compare
Atu0690 -1.2 -1.4 hypothetical protein compare
Atu0354 -1.2 -2.4 ferric uptake regulator compare
Atu0943 -1.2 -1.3 hypothetical protein compare
Atu1694 -1.2 -2.5 hypothetical protein compare
Atu4077 -1.2 -6.8 glycogen branching protein compare
Atu2113 -1.1 -3.1 N-acetylmuramoyl-L-alanine amidase compare
Atu0768 -1.1 -7.0 cytochrome-c oxidase chain I compare
Atu0972 -1.1 -4.2 lipA protein compare
Atu0029 -1.1 -4.5 S-adenosylhomocysteine hydrolase compare
Atu3915 -1.1 -1.9 MerR family transcriptional regulator compare
Atu4205 -1.0 -5.4 TetR family transcriptional regulator compare
Atu0043 -1.0 -2.2 imidazoleglycerol-phosphate dehydratase compare
Atu1103 -1.0 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0647 -1.0 -4.7 phosphoribosylamine--glycine ligase compare
Atu1308 -1.0 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0189 -1.0 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu4501 -1.0 -5.9 hypothetical protein compare
Atu0777 -1.0 -0.9 hypothetical protein compare
Atu4217 -1.0 -1.6 TetR family transcriptional regulator compare
Atu0971 -1.0 -3.0 two component sensor kinase compare
Atu0846 -0.9 -3.0 transcriptional regulator, MarR family compare
Atu0812 -0.9 -2.2 hypothetical protein compare
Atu1141 -0.9 -4.8 Phosphoribosylglycinamide synthetase compare
Atu0039 -0.9 -1.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1026 -0.9 -2.1 hypothetical protein compare
Atu1526 -0.9 -4.9 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu1850 -0.9 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1444 -0.8 -3.1 nitrogen regulation protein compare
Atu8082 -0.8 -2.0 hypothetical protein compare
Atu1484 -0.8 -2.2 transcriptional regulator compare
Atu1028 -0.8 -1.6 hypothetical protein compare
Atu3763 -0.8 -1.1 hypothetical protein compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu6165 -0.8 -0.9 hypothetical protein compare
Atu2207 -0.8 -2.6 two component sensor kinase compare
Atu0941 -0.8 -0.8 hypothetical protein compare
Atu1845 -0.8 -1.8 phosphoribosylformylglycinamidine synthase I compare
Atu1457 -0.8 -1.5 hypothetical protein compare
Atu0723 -0.8 -1.7 FAD dependent oxidoreductase compare
Atu2289 -0.8 -4.9 anthranilate synthase component I and II compare
Atu2655 -0.8 -4.0 hypothetical protein compare
Atu1874 -0.8 -1.6 RecA protein compare
Atu0101 -0.8 -1.8 cytochrome c compare
Atu0103 -0.8 -4.9 penicillin-binding protein compare
Atu0973 -0.8 -3.8 cycH protein compare
Atu0435 -0.8 -1.4 tRNA-Gly compare
Atu2634 -0.8 -1.1 hypothetical protein compare
Atu1339 -0.7 -2.6 ribonuclease E compare
Atu6189 -0.7 -0.9 protein secretion chaperone compare
Atu4199 -0.7 -4.9 TetR family transcriptional regulator compare
Atu0689 -0.7 -4.4 ribosomal large subunit pseudouridine synthase B compare
Atu0017 -0.7 -1.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4882 -0.7 -1.2 hypothetical protein compare
Atu3011 -0.7 -2.7 ArsR family transcriptional regulator compare
Atu3510 -0.7 -2.5 amidohydrolase compare
Atu2237 -0.7 -3.1 cytochrome c1 compare
Atu0953 -0.7 -0.9 hypothetical protein compare
Atu0346 -0.7 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3120 -0.7 -1.0 hypothetical protein compare
Atu1570 -0.7 -0.9 hypothetical protein compare
Atu1445 -0.7 -2.8 two component sensor kinase compare
Atu2187 -0.7 -1.7 transcriptional regulator, ArsR family compare
Atu0925 -0.7 -1.9 hypothetical protein compare
Atu1075 -0.7 -3.2 amidophosphoribosyltransferase compare
Atu1640 -0.7 -2.5 hypothetical protein compare
Atu3572 -0.7 -3.9 transcriptional regulator compare
Atu4837 -0.7 -3.0 hypothetical protein compare
Atu1573 -0.7 -1.2 hypothetical protein compare
Atu0153 -0.7 -3.2 transcriptional regulator, Fur family compare
Atu3012 -0.7 -1.5 hypothetical protein compare
Atu1225 -0.7 -1.3 hypothetical protein compare
Atu3697 -0.7 -2.9 ATP-dependent protease LA 2 compare
Atu2346 -0.7 -4.1 ABC transporter, membrane spanning protein (sugar) compare
Atu0528 -0.7 -1.6 large conductance mechanosensitive channel protein compare
Atu1254 -0.7 -1.0 transcriptional regulator, ArsR family compare
Atu4711 -0.7 -3.3 two component sensor kinase compare
Atu0152 -0.7 -1.4 hypothetical protein compare
Atu0086 -0.6 -0.8 ribosome-binding factor A compare
Atu1891 -0.6 -2.1 cobalamin biosynthesis protein compare
Atu1286 -0.6 -3.2 hypothetical protein compare
Atu8063 -0.6 -1.6 hypothetical protein compare
Atu0399 -0.6 -1.9 dihydroorotase compare
Atu1467 -0.6 -2.1 hypothetical protein compare
Atu4078 -0.6 -5.0 glycogen phosphorylase compare
Atu1223 -0.6 -1.0 hypothetical protein compare
Atu1127 -0.6 -1.4 molybdopterin converting factor small subunit compare
Atu1380 -0.6 -2.7 zinc metallopeptidase compare
Atu0771 -0.6 -2.9 cytochrome c oxidase subunit III compare
Atu3759 -0.6 -1.0 hypothetical protein compare
Atu1242 -0.6 -2.8 cytochrome oxidase assembly factor compare
Atu0565 -0.6 -1.5 hypothetical protein compare
Atu2682 -0.6 -1.6 hypothetical protein compare
Atu0894 -0.6 -1.3 ABC transporter, membrane spanning protein compare
Atu3773 -0.6 -1.6 hypothetical protein compare
Atu1468 -0.6 -2.9 hypothetical protein compare
Atu0662 -0.6 -3.2 transcriptional regulator, GntR family compare
Atu6114 -0.6 -1.0 hypothetical protein compare
Atu0093 -0.6 -1.7 Recombination protein compare
Atu0471 -0.6 -2.6 hypothetical protein compare
Atu4866 -0.6 -1.7 hypothetical protein compare
Atu0460 -0.6 -2.2 hypothetical protein compare
Atu1722 -0.6 -2.0 hypothetical protein compare
Atu2728 -0.6 -2.1 beta (1-->2) glucan export ATP-binding protein compare
Atu1140 -0.6 -2.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5427 -0.6 -1.1 hypothetical protein compare
Atu4897 -0.6 -0.8 hypothetical protein compare
Atu4161 -0.6 -0.9 hypothetical protein compare
Atu3754 -0.6 -1.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2608 -0.6 -3.4 N-acetylglucosamine-6-phosphate deacetylase compare
Atu2347 -0.6 -3.1 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu0486 -0.6 -2.6 dihydroorotate dehydrogenase compare
Atu4061 -0.6 -2.0 exopolysaccharide production repressor protein compare
Atu2278 -0.6 -2.3 transcriptional regulator, ArsR family compare
Atu4611 -0.6 -2.2 transposase compare
Atu2656 -0.6 -3.6 hypothetical protein compare
Atu1739 -0.6 -2.4 permease compare
Atu0744 -0.6 -2.3 hypothetical protein compare
Atu6036 -0.6 -0.7 entry-exclusion protein compare
Atu2052 -0.6 -3.0 hypothetical protein compare
Atu4093 -0.6 -1.7 hypothetical protein compare
Atu4527 -0.6 -1.1 hypothetical protein compare
Atu1620 -0.6 -3.6 triosephosphate isomerase compare
Atu0585 -0.6 -2.1 hypothetical protein compare
Atu1770 -0.5 -2.6 glutamine synthetase compare
Atu2683 -0.5 -1.0 hypothetical protein compare
Atu0703 -0.5 -1.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4884 -0.5 -1.4 hypothetical protein compare
Atu2348 -0.5 -3.0 sugar binding protein compare
Atu4841 -0.5 -3.2 DeoR family transcriptional regulator compare
Atu1129 -0.5 -2.7 excinuclease ABC chain C compare
Atu2437 -0.5 -2.0 hypothetical protein compare
Atu3744 -0.5 -3.3 ABC transporter permease compare
Atu8202 -0.5 -2.5 hypothetical protein compare
Atu2073 -0.5 -2.0 membrane protein compare
Atu0274 -0.5 -3.2 aminopeptidase compare
Atu1629 -0.5 -0.9 transcriptional regulator, ArsR family compare
Atu3798 -0.5 -2.9 TetR family transcriptional regulator compare
Atu1793 -0.5 -2.7 phosphatidylcholine synthase compare
Atu1818 -0.5 -1.3 hypothetical protein compare
Atu0467 -0.5 -2.0 hypothetical protein compare
Atu3886 -0.5 -2.4 lysophospholipase compare
Atu2729 -0.5 -1.1 hypothetical protein compare
Atu3078 -0.5 -2.8 LysR family transcriptional regulator compare
Atu4223 -0.5 -0.9 sarcosine oxidase delta subunit compare
Atu8118 -0.5 -1.9 putative universal stress protein compare
Atu1177 -0.5 -2.2 hypothetical protein compare
Atu6126 -0.5 -1.9 conjugal transfer protein, Dtr system compare
Atu1661 -0.5 -2.8 soluble pyridine nucleotide transhydrogenase compare
Atu0705 -0.5 -3.3 3-oxoacyl-(acyl carrier protein) reductase compare
Atu1163 -0.5 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4214 -0.5 -1.6 cold shock protein compare
Atu0477 -0.5 -0.9 hypothetical protein compare
Atu4873 -0.5 -2.2 TetR family transcriptional regulator compare
Atu0298 -0.5 -1.8 orotidine 5 compare
Atu1110 -0.5 -1.2 cytosol aminopeptidase compare
Atu3001 -0.5 -1.1 hypothetical protein compare
Atu0636 -0.5 -2.2 hypothetical protein compare
Atu1646 -0.5 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu5088 -0.5 -1.3 hypothetical protein compare
Atu8088 -0.5 -1.0 hypothetical protein compare
Atu3911 -0.5 -1.1 hypothetical protein compare
Atu3126 -0.5 -1.9 hypothetical protein compare
Atu5057 -0.5 -1.0 hypothetical protein compare
Atu0897 -0.5 -3.5 protease II compare
Atu3613 -0.5 -2.3 hypothetical protein compare
Atu8019 -0.5 -2.0 hypothetical protein compare
Atu0976 -0.5 -0.9 cycL protein compare
Atu0931 -0.5 -3.1 penicillin binding protein compare
Atu2217 -0.5 -1.3 hypothetical protein compare
Atu0926 -0.5 -1.6 hypothetical protein compare
Atu5424 -0.5 -3.1 oxidoreductase compare
Atu3392 -0.5 -2.0 methyltransferase compare
Atu3280 -0.5 -1.9 GntR family transcriptional regulator compare
Atu2484 -0.5 -0.9 hypothetical protein compare
Atu2692 -0.5 -1.9 intracellular septation protein compare
Atu2067 -0.5 -0.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Paraquat dichloride in Agrobacterium fabrum C58

For stress Paraquat dichloride across organisms