Experiment set4IT053 for Pseudomonas simiae WCS417

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.6 -1.8 deoxycytidine triphosphate deaminase compare
PS417_23770 -3.3 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.3 -4.2 ATP-binding protein compare
PS417_08025 -2.2 -2.9 acetylornithine aminotransferase compare
PS417_02210 -1.9 -11.0 diguanylate cyclase compare
PS417_04650 -1.9 -2.2 D-alanine--D-alanine ligase compare
PS417_16555 -1.7 -2.5 cupin compare
PS417_04595 -1.7 -3.9 cell division protein MraZ compare
PS417_10405 -1.6 -1.7 filamentous hemagglutinin compare
PS417_23950 -1.5 -4.6 polynucleotide phosphorylase/polyadenylase compare
PS417_26990 -1.5 -2.2 RNA pyrophosphohydrolase compare
PS417_05985 -1.4 -2.7 chemotaxis protein CheY compare
PS417_01285 -1.4 -2.2 haloacid dehalogenase compare
PS417_00510 -1.3 -1.5 membrane protein compare
PS417_08125 -1.3 -1.3 prephenate dehydratase compare
PS417_03560 -1.3 -2.6 GTP-binding protein compare
PS417_03260 -1.3 -2.9 5S ribosomal RNA compare
PS417_15975 -1.3 -2.5 glutamate carboxypeptidase compare
PS417_21625 -1.2 -1.2 DNA-binding protein compare
PS417_00045 -1.2 -2.8 glycerol acyltransferase compare
PS417_10480 -1.2 -1.3 glutathione S-transferase compare
PS417_02950 -1.2 -2.7 tRNA-dihydrouridine synthase B compare
PS417_05815 -1.1 -4.8 recombinase RecA compare
PS417_27800 -1.1 -4.9 exodeoxyribonuclease III compare
PS417_19720 -1.1 -1.4 DNA-binding protein compare
PS417_22450 -1.1 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_26835 -1.1 -2.7 3-mercaptopyruvate sulfurtransferase compare
PS417_00650 -1.1 -1.1 LysR family transcriptional regulator compare
PS417_07820 -1.1 -2.4 transposase compare
PS417_27045 -1.1 -2.9 ATPase compare
PS417_17945 -1.0 -1.2 hypothetical protein compare
PS417_06680 -1.0 -6.2 nuclease PIN compare
PS417_02270 -1.0 -4.2 carbamoyltransferase compare
PS417_09085 -1.0 -1.6 hypothetical protein compare
PS417_15100 -1.0 -1.4 BatB protein compare
PS417_27870 -1.0 -2.6 ATP-dependent DNA helicase RecG compare
PS417_02555 -1.0 -7.7 exoribonuclease R compare
PS417_22190 -1.0 -5.2 diguanylate cyclase compare
PS417_21515 -1.0 -5.7 transcriptional regulator compare
PS417_06945 -0.9 -1.3 membrane protein compare
PS417_25710 -0.9 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_21630 -0.9 -1.9 magnesium transporter compare
PS417_13800 -0.9 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_00920 -0.9 -3.5 diguanylate cyclase compare
PS417_16490 -0.9 -1.8 cell division protein FtsK compare
PS417_04385 -0.9 -3.2 organic solvent ABC transporter substrate-binding protein compare
PS417_22445 -0.9 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_24705 -0.9 -2.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_22990 -0.9 -1.2 iron dicitrate transport regulator FecR compare
PS417_19600 -0.9 -1.1 exonuclease compare
PS417_26900 -0.9 -1.6 L-cystine transporter tcyP compare
PS417_17240 -0.8 -2.3 trigger factor compare
PS417_15110 -0.8 -4.5 protein BatD compare
PS417_27425 -0.8 -4.7 exopolyphosphatase compare
PS417_15105 -0.8 -4.5 membrane protein compare
PS417_13820 -0.8 -4.1 UDP-glucose 6-dehydrogenase compare
PS417_12855 -0.8 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19625 -0.8 -2.3 histidine kinase compare
PS417_05785 -0.8 -2.3 tail protein compare
PS417_07440 -0.8 -2.7 cyclic nucleotide-binding protein compare
PS417_05365 -0.8 -1.6 FAD-binding protein compare
PS417_13255 -0.8 -1.3 ABC transporter compare
PS417_27815 -0.8 -1.0 hypothetical protein compare
PS417_19655 -0.8 -3.5 chemotaxis protein CheW compare
PS417_07710 -0.8 -4.1 membrane protein compare
PS417_26525 -0.8 -5.0 DEAD/DEAH box helicase compare
PS417_17840 -0.8 -1.8 betaine-aldehyde dehydrogenase compare
PS417_26985 -0.8 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13790 -0.8 -3.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_17630 -0.8 -2.0 RNA polymerase sigma factor compare
PS417_24115 -0.8 -1.6 hypothetical protein compare
PS417_00900 -0.8 -1.8 4-aminobutyrate aminotransferase compare
PS417_23995 -0.8 -0.8 preprotein translocase subunit SecG compare
PS417_23135 -0.8 -1.3 GTP-binding protein compare
PS417_14305 -0.8 -2.1 hydroxyproline-2-epimerase compare
PS417_08580 -0.8 -2.8 histidine kinase compare
PS417_20985 -0.8 -2.1 porin compare
PS417_27135 -0.8 -0.7 glutamine synthetase compare
PS417_23025 -0.7 -3.8 murein transglycosylase compare
PS417_25765 -0.7 -1.6 transcriptional regulator compare
PS417_13010 -0.7 -1.6 alpha/beta hydrolase compare
PS417_09865 -0.7 -1.0 hypothetical protein compare
PS417_21000 -0.7 -1.3 CrfX protein compare
PS417_17860 -0.7 -2.8 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_15115 -0.7 -2.5 exonuclease SbcD compare
PS417_27835 -0.7 -2.4 endoribonuclease compare
PS417_11440 -0.7 -1.4 hypothetical protein compare
PS417_06245 -0.7 -2.0 zinc metallopeptidase RseP compare
PS417_27245 -0.7 -2.9 aminotransferase DegT compare
PS417_15890 -0.7 -1.3 RNA polymerase sigma factor compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_13425 -0.7 -1.6 cupin compare
PS417_07095 -0.7 -4.6 histidine kinase compare
PS417_01145 -0.7 -0.9 taurine transporter ATP-binding subunit compare
PS417_23455 -0.7 -1.4 LrgA compare
PS417_10695 -0.7 -2.5 decarboxylase compare
PS417_10490 -0.7 -1.5 delta-aminolevulinic acid dehydratase compare
PS417_13795 -0.7 -4.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07585 -0.7 -2.4 hypothetical protein compare
PS417_08090 -0.7 -0.8 3-oxoacyl-ACP reductase compare
PS417_16560 -0.7 -1.5 GNAT family acetyltransferase compare
PS417_26515 -0.7 -3.5 hypothetical protein compare
PS417_09655 -0.7 -2.1 RNA polymerase sigma factor compare
PS417_27795 -0.7 -0.8 orotate phosphoribosyltransferase compare
PS417_19265 -0.7 -3.7 membrane protein compare
PS417_05135 -0.7 -3.6 nucleoid-associated protein compare
PS417_21120 -0.6 -2.3 phosphoserine phosphatase compare
PS417_16350 -0.6 -3.3 competence protein ComEC compare
PS417_03365 -0.6 -2.4 transcriptional regulator compare
PS417_22780 -0.6 -2.9 XRE family transcriptional regulator compare
PS417_17560 -0.6 -1.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_11340 -0.6 -1.7 prevent-host-death protein compare
PS417_18010 -0.6 -1.8 acid phosphatase compare
PS417_04170 -0.6 -3.7 stringent starvation protein A compare
PS417_05975 -0.6 -0.6 chemotaxis protein CheW compare
PS417_00590 -0.6 -1.3 5S ribosomal RNA compare
PS417_26800 -0.6 -3.8 cell division protein FtsX compare
PS417_13055 -0.6 -1.8 aminotransferase compare
PS417_19415 -0.6 -1.2 allantoinase compare
PS417_19190 -0.6 -2.1 BolA family transcriptional regulator compare
PS417_16275 -0.6 -1.5 hypothetical protein compare
PS417_12845 -0.6 -2.2 NAD(P)H dehydrogenase compare
PS417_15650 -0.6 -1.0 glutamine amidotransferase compare
PS417_19225 -0.6 -3.1 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_11350 -0.6 -1.4 biopolymer transporter ExbB compare
PS417_11535 -0.6 -1.7 nicotinate phosphoribosyltransferase compare
PS417_12270 -0.6 -1.9 pyruvate dehydrogenase compare
PS417_13510 -0.6 -0.8 polyketide cyclase compare
PS417_02225 -0.6 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_14965 -0.6 -2.5 transcriptional regulator compare
PS417_21680 -0.6 -3.0 succinylglutamate desuccinylase compare
PS417_17590 -0.6 -1.1 ABC transporter substrate-binding protein compare
PS417_20785 -0.6 -1.8 transcriptional regulator compare
PS417_19660 -0.6 -3.6 cobalamin biosynthesis protein CobQ compare
PS417_16920 -0.6 -2.0 multidrug RND transporter compare
PS417_21480 -0.6 -1.0 23S rRNA pseudouridylate synthase compare
PS417_24575 -0.6 -1.1 hypothetical protein compare
PS417_12840 -0.6 -1.5 TetR family transcriptional regulator compare
PS417_23380 -0.6 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_17685 -0.6 -1.0 allantoate amidohydrolase compare
PS417_26335 -0.6 -1.2 BetI family transcriptional regulator compare
PS417_26815 -0.6 -1.7 peptidase M16 compare
PS417_01465 -0.6 -3.0 hypothetical protein compare
PS417_13580 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_07305 -0.6 -1.0 3-beta hydroxysteroid dehydrogenase compare
PS417_15775 -0.6 -1.8 short-chain dehydrogenase compare
PS417_10920 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_04590 -0.6 -2.9 methyltransferase compare
PS417_24210 -0.6 -3.8 dolichyl-phosphate-mannose-protein mannosyltransferase compare
PS417_10220 -0.6 -1.2 hypothetical protein compare
PS417_09330 -0.6 -1.7 NAD(P)H-quinone oxidoreductase compare
PS417_20520 -0.6 -2.1 3-phosphoglycerate kinase compare
PS417_07945 -0.6 -1.5 hypothetical protein compare
PS417_16775 -0.6 -1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_04290 -0.6 -1.9 hypothetical protein compare
PS417_22575 -0.6 -2.6 exonuclease I compare
PS417_02915 -0.6 -1.6 precorrin-3B C17-methyltransferase compare
PS417_01115 -0.6 -0.7 serine acetyltransferase compare
PS417_13455 -0.5 -1.7 alkaline proteinase inhibitor compare
PS417_10245 -0.5 -0.7 hypothetical protein compare
PS417_15085 -0.5 -2.2 ATPase AAA compare
PS417_12335 -0.5 -2.1 cobalt transporter compare
PS417_13805 -0.5 -3.1 4-amino-4-deoxy-L-arabinose transferase compare
PS417_00620 -0.5 -2.5 GntR family transcriptional regulator compare
PS417_22680 -0.5 -1.9 chemotaxis protein CheY compare
PS417_19155 -0.5 -2.5 DSBA oxidoreductase compare
PS417_01580 -0.5 -0.9 imidazole glycerol phosphate synthase compare
PS417_27380 -0.5 -0.9 GntR family transcriptional regulator compare
PS417_04965 -0.5 -1.6 hypothetical protein compare
PS417_16715 -0.5 -0.7 DoxX family protein compare
PS417_06165 -0.5 -2.2 thiamine biosynthesis protein ThiF compare
PS417_02880 -0.5 -1.2 copper chaperone compare
PS417_15410 -0.5 -1.1 hypothetical protein compare
PS417_23490 -0.5 -1.0 dihydrofolate reductase compare
PS417_02740 -0.5 -1.3 LysR family transcriptional regulator compare
PS417_07245 -0.5 -1.3 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_13680 -0.5 -2.3 3-oxoacyl-ACP synthase compare
PS417_10335 -0.5 -1.1 peroxiredoxin compare
PS417_17705 -0.5 -1.6 LacI family transcriptional regulator compare
PS417_17340 -0.5 -2.3 GNAT family acetyltransferase compare
PS417_16720 -0.5 -0.7 membrane protein compare
PS417_08135 -0.5 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02975 -0.5 -1.6 3-dehydroquinate dehydratase compare
PS417_27040 -0.5 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_11825 -0.5 -1.2 transcriptional regulator compare
PS417_16495 -0.5 -1.5 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_12020 -0.5 -2.2 peptidase compare
PS417_10145 -0.5 -1.1 hypothetical protein compare
PS417_15560 -0.5 -1.7 hypothetical protein compare
PS417_21600 -0.5 -3.3 pilus assembly protein PilZ compare
PS417_02415 -0.5 -2.0 phosphoserine phosphatase compare
PS417_14710 -0.5 -0.9 isochorismatase compare
PS417_06780 -0.5 -1.8 TetR family transcriptional regulator compare
PS417_14195 -0.5 -2.8 magnesium ABC transporter ATPase compare
PS417_23640 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_07400 -0.5 -1.5 hypothetical protein compare
PS417_06885 -0.5 -2.3 dihydrodipicolinate synthase compare
PS417_13660 -0.5 -1.1 AsnC family transcriptional regulator compare
PS417_17305 -0.5 -0.6 hypothetical protein compare
PS417_15735 -0.5 -2.1 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Dimethyl Sulfoxide across organisms