Experiment set4IT051 for Agrobacterium fabrum C58

Compare to:

R2A with Nalidixic acid sodium salt 0.02 mM

200 most important genes:

  gene name fitness t score description  
Atu4149 -4.7 -9.5 UDP-glucose 6-dehydrogenase compare
Atu2590 -4.0 -8.9 hypothetical protein compare
Atu0269 -3.9 -6.3 exodeoxyribonuclease VII large subunit compare
Atu4217 -3.8 -3.1 TetR family transcriptional regulator compare
Atu2582 -3.7 -6.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2592 -3.7 -4.3 hypothetical protein compare
Atu2083 -3.5 -4.5 DNA repair protein RecN compare
Atu2577 -3.4 -16.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2585 -3.2 -3.1 hypothetical protein compare
Atu3469 -3.0 -3.5 phosphoglyceromutase compare
Atu1077 -3.0 -4.1 DNA repair protein compare
Atu2591 -3.0 -7.8 glucosyltransferase compare
Atu2583 -2.9 -10.5 glycosyltransferase compare
Atu4148 -2.8 -4.9 UDP-glucuronic acid epimerase compare
Atu0017 -2.7 -2.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2584 -2.5 -3.1 hypothetical protein compare
Atu0953 -2.4 -2.1 hypothetical protein compare
Atu2482 -2.3 -12.2 HlyD family secretion protein conserved
Atu0103 -2.2 -8.3 penicillin-binding protein compare
Atu0041 -2.2 -2.5 glutamine amidotransferase compare
Atu2483 -2.1 -14.7 AcrB/AcrD/AcrF family protein conserved
Atu1163 -2.1 -2.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2710 -2.1 -7.6 hypothetical protein compare
Atu0434 -2.0 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu6098 -2.0 -1.0 transcriptional regulator, HTH family compare
Atu3712 -2.0 -2.3 hypothetical protein compare
Atu0400 -2.0 -3.1 orotate phosphoribosyltransferase compare
Atu0184 -2.0 -3.6 glucokinase compare
Atu3739 -2.0 -2.6 phosphoglycerate kinase compare
Atu2207 -2.0 -4.7 two component sensor kinase compare
Atu2728 -1.9 -4.4 beta (1-->2) glucan export ATP-binding protein compare
Atu0421 -1.8 -1.9 ABC transporter, membrane spanning protein compare
Atu1687 -1.8 -6.3 anthranilate phosphoribosyltransferase compare
Atu1359 -1.8 -1.3 dnaK deletion suppressor protein compare
Atu2684 -1.7 -1.3 hypothetical protein compare
Atu0422 -1.7 -1.9 ABC transporter, membrane spanning protein compare
Atu2057 -1.7 -2.5 DNA helicase II compare
Atu2798 -1.7 -4.8 precorrin-6y methyltransferase compare
Atu3634 -1.6 -4.3 penicillin-binding protein dacf precursor compare
Atu0190 -1.5 -8.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3763 -1.5 -2.1 hypothetical protein compare
Atu1308 -1.5 -3.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0039 -1.4 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1874 -1.4 -2.0 RecA protein compare
Atu2113 -1.4 -2.5 N-acetylmuramoyl-L-alanine amidase compare
Atu0025 -1.4 -2.2 hypothetical protein compare
Atu1307 -1.3 -3.8 dihydroorotase compare
Atu3120 -1.3 -1.4 hypothetical protein compare
Atu1685 -1.3 -1.1 hypothetical protein compare
Atu2036 -1.3 -8.8 acetolactate synthase III, large subunit compare
Atu1688 -1.3 -3.2 indole-3-glycerol-phosphate synthase compare
Atu2439 -1.2 -1.1 hypothetical protein compare
Atu4166 -1.2 -2.4 UDP-glucose 4-epimerase compare
Atu1149 -1.2 -1.4 adenylate cyclase compare
Atu1891 -1.2 -2.3 cobalamin biosynthesis protein compare
Atu0399 -1.2 -3.8 dihydroorotase compare
Atu1225 -1.2 -1.4 hypothetical protein compare
Atu0535 -1.2 -3.7 hypothetical protein compare
Atu1774 -1.1 -4.8 ABC transporter, substrate binding protein (peptide) compare
Atu0040 -1.1 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3121 -1.1 -1.3 cold shock protein compare
Atu1075 -1.1 -5.8 amidophosphoribosyltransferase compare
Atu2802 -1.1 -5.4 precorrin-8X methylmutase compare
Atu0189 -1.1 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2800 -1.1 -2.3 precorrin-3B C17-methyltransferase compare
Atu1647 -1.1 -6.1 ABC transporter, membrane spanning protein compare
Atu0188 -1.1 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu4615 -1.1 -7.1 glucose-1-phosphate thymidylyltransferase compare
Atu0971 -1.0 -3.6 two component sensor kinase compare
Atu4144 -1.0 -1.2 hypothetical protein compare
Atu4072 -1.0 -1.5 nodulation protein N compare
Atu2799 -1.0 -3.2 precorrin-6x reductase compare
Atu0486 -1.0 -3.3 dihydroorotate dehydrogenase compare
Atu3486 -1.0 -2.4 DeoR family transcriptional regulator compare
Atu0225 -1.0 -1.0 hypothetical protein compare
Atu2807 -1.0 -4.5 cob(I)alamin adenosyltransferase compare
Atu3730 -1.0 -1.3 hypothetical protein compare
Atu3754 -1.0 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2692 -1.0 -2.2 intracellular septation protein compare
Atu2289 -1.0 -5.6 anthranilate synthase component I and II compare
Atu3353 -0.9 -4.3 mannose-1-phosphate guanylyltransferase compare
Atu0976 -0.9 -1.4 cycL protein compare
Atu2040 -0.9 -2.9 phosphoserine phosphatase compare
Atu3012 -0.9 -1.7 hypothetical protein compare
Atu8190 -0.9 -3.0 hypothetical protein compare
Atu2808 -0.9 -4.4 cobyric acid synthase compare
Atu2804 -0.9 -5.4 cobaltochelatase subunit compare
Atu4614 -0.9 -5.3 glycosyltransferase compare
Atu1446 -0.9 -1.1 two component response regulator compare
Atu0972 -0.9 -4.1 lipA protein compare
Atu1810 -0.9 -1.0 hypothetical protein compare
Atu2067 -0.9 -1.0 hypothetical protein compare
Atu4618 -0.9 -5.3 dTDP-rhamnose-3,5-epimerase compare
Atu2238 -0.9 -4.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2793 -0.9 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu0883 -0.9 -1.5 hypothetical protein compare
Atu3009 -0.9 -1.1 exopolysaccharide production protein compare
Atu1028 -0.9 -2.2 hypothetical protein compare
Atu2183 -0.9 -4.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0647 -0.8 -2.8 phosphoribosylamine--glycine ligase compare
Atu4108 -0.8 -4.5 ribonuclease D compare
Atu3697 -0.8 -4.1 ATP-dependent protease LA 2 compare
Atu5468 -0.8 -1.4 hypothetical protein compare
Atu0886 -0.8 -1.4 hypothetical protein compare
Atu0142 -0.8 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1845 -0.8 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu1447 -0.8 -1.4 two component sensor kinase compare
Atu1030 -0.8 -1.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5173 -0.8 -1.2 dehydrogenase compare
Atu0220 -0.8 -2.9 components of type IV pilus compare
Atu1254 -0.8 -1.5 transcriptional regulator, ArsR family compare
Atu0510 -0.8 -4.7 pH adaption potassium efflux system protein compare
Atu2480 -0.8 -4.7 transcriptional regulator, LysR family compare
Atu5164 -0.8 -0.6 type IV secretion protein AvhB3 compare
Atu2650 -0.8 -4.4 glycerol-3-phosphate dehydrogenase compare
Atu4317 -0.8 -2.2 TetR family transcriptional regulator compare
Atu4527 -0.8 -1.3 hypothetical protein compare
Atu1542 -0.8 -3.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1619 -0.8 -1.5 protein-export membrane protein SECG compare
Atu1355 -0.8 -4.6 hypothetical protein compare
Atu4617 -0.8 -4.4 dTDP-D-glucose-4,6-dehydratase compare
Atu2796 -0.8 -2.7 precorrin-4 C11-methyltransferase compare
Atu5075 -0.8 -2.7 GntR family transcriptional regulator compare
Atu2464 -0.8 -1.7 formyltetrahydrofolate deformylase compare
Atu3429 -0.8 -1.1 hypothetical protein compare
Atu4205 -0.8 -4.4 TetR family transcriptional regulator compare
Atu2270 -0.8 -1.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu0413 -0.8 -1.5 stress induced protein compare
Atu1127 -0.7 -1.6 molybdopterin converting factor small subunit compare
Atu0640 -0.7 -1.4 hypothetical protein compare
Atu1291 -0.7 -1.6 hypothetical protein compare
Atu3518 -0.7 -4.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1645 -0.7 -3.6 ABC transporter, substrate binding protein compare
Atu1844 -0.7 -2.0 Phosphoribosylformylglycinamidine synthetase compare
Atu0723 -0.7 -1.3 FAD dependent oxidoreductase compare
Atu2805 -0.7 -3.6 cobalamin synthesis protein compare
Atu1646 -0.7 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2442 -0.7 -1.4 hypothetical protein compare
Atu4613 -0.7 -5.0 glycosyltransferase compare
Atu4567 -0.7 -2.7 ROK family transcriptional regulator compare
Atu4075 -0.7 -2.4 glycogen synthase compare
Atu3755 -0.7 -2.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1258 -0.7 -2.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu0030 -0.7 -1.0 phosphocarrier protein HPr compare
Atu3468 -0.7 -0.7 hypothetical protein compare
Atu4773 -0.7 -1.1 two component response regulator compare
Atu1573 -0.7 -1.1 hypothetical protein compare
Atu3593 -0.7 -4.0 hypothetical protein compare
Atu1660 -0.7 -2.8 hypothetical protein compare
Atu3311 -0.7 -4.8 phosphomannose isomerase compare
Atu0419 -0.7 -1.7 two component sensor kinase compare
Atu4418 -0.7 -2.2 glutaryl-CoA dehydrogenase compare
Atu1644 -0.7 -1.5 hypothetical protein compare
Atu3579 -0.7 -2.0 lactoylglutathione lyase compare
Atu0566 -0.7 -1.2 hypothetical protein compare
Atu8131 -0.7 -4.2 pH adaption potassium efflux system protein compare
Atu2772 -0.7 -2.2 Invasion protein A compare
Atu2073 -0.7 -2.0 membrane protein compare
Atu2795 -0.6 -3.3 cobalamin biosynthetic protein compare
Atu4630 -0.6 -1.7 hypothetical protein compare
Atu0331 -0.6 -1.5 sigma-54 modulation protein compare
Atu0401 -0.6 -2.8 fructokinase compare
Atu0501 -0.6 -4.6 acyl-CoA dehydrogenase compare
Atu4173 -0.6 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu1285 -0.6 -2.5 metal dependent hydrolase compare
Atu0726 -0.6 -3.8 ring hydroxylating dioxygenase, alpha-subunit compare
Atu3727 -0.6 -1.7 hypothetical protein compare
Atu2809 -0.6 -3.7 cobalamin biosynthesis protein compare
Atu1606 -0.6 -2.6 methionine aminopeptidase compare
Atu2615 -0.6 -3.7 hypothetical protein compare
Atu0193 -0.6 -1.9 glutamine synthetase compare
Atu0086 -0.6 -0.6 ribosome-binding factor A compare
Atu5540 -0.6 -0.5 hypothetical protein compare
Atu2803 -0.6 -1.8 Cobalamin biosynthesis associated protein compare
Atu2193 -0.6 -0.7 hypothetical protein compare
Atu0205 -0.6 -3.8 methylmalonate-semialdehyde dehydrogenase compare
Atu4093 -0.6 -1.3 hypothetical protein compare
Atu1902 -0.6 -2.0 transketolase compare
Atu0298 -0.6 -2.7 orotidine 5 compare
Atu0346 -0.6 -0.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2801 -0.6 -1.7 precorrin-2 C20 methyltransferase compare
Atu3045 -0.6 -2.9 hypothetical protein compare
Atu4306 -0.6 -1.8 two component response regulator compare
Atu1846 -0.6 -0.9 hypothetical protein compare
Atu2347 -0.6 -3.5 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1527 -0.6 -1.1 nitrogen fixation protein FixS compare
Atu1474 -0.6 -2.0 hypothetical protein compare
Atu1793 -0.6 -2.7 phosphatidylcholine synthase compare
Atu0943 -0.6 -1.1 hypothetical protein compare
Atu2726 -0.6 -4.3 pyruvate carboxylase compare
Atu8185 -0.6 -2.0 hypothetical protein compare
Atu3706 -0.6 -3.0 D-3-phosphoglycerate dehydrogenase compare
Atu3915 -0.6 -2.9 MerR family transcriptional regulator compare
Atu2589 -0.6 -3.1 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu4161 -0.6 -1.0 hypothetical protein compare
Atu5517 -0.6 -1.1 hypothetical protein compare
Atu0031 -0.6 -0.9 PTS system, IIA component compare
Atu4854 -0.6 -1.8 hypothetical protein compare
Atu5504 -0.6 -2.2 hypothetical protein compare
Atu1223 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Nalidixic acid sodium salt in Agrobacterium fabrum C58

For stress Nalidixic acid sodium salt across organisms