Experiment set4IT050 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with EIP16_phage 0.875 MOI

200 most important genes:

  gene name fitness t score description  
GFF2880 -6.3 -7.5 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF1808 -6.3 -5.6 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2968 -5.3 -7.8 Stringent starvation protein A compare
GFF2882 -5.3 -9.5 Lipopolysaccharide biosynthesis protein RffA compare
GFF4601 -5.2 -6.2 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2881 -5.1 -4.9 WzxE protein compare
GFF4798 -5.0 -4.4 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF1076 -4.8 -3.7 Aerobic respiration control protein arcA compare
GFF3667 -4.7 -2.3 Cytidylate kinase (EC 2.7.4.25) compare
GFF3149 -4.6 -13.1 Type I secretion outer membrane protein, TolC precursor compare
GFF1737 -4.5 -3.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF87 -4.3 -1.7 C4-type zinc finger protein, DksA/TraR family compare
GFF2922 -4.2 -2.7 Transcription elongation factor GreA compare
GFF610 -3.9 -5.9 Ferrous iron transport protein A compare
GFF629 -3.8 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
GFF4596 -3.7 -4.4 Ferric uptake regulation protein FUR compare
GFF2430 -3.6 -2.3 Ferredoxin, 2Fe-2S compare
GFF824 -3.5 -4.1 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF20 -3.5 -8.0 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF608 -3.4 -4.2 Ferrous iron-sensisng transcriptional regulator FeoC compare
GFF1396 -3.4 -15.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2475 -3.3 -2.0 Ribonuclease III (EC 3.1.26.3) compare
GFF609 -3.2 -12.2 Ferrous iron transport protein B compare
GFF3566 -3.2 -4.3 major outer membrane lipoprotein compare
GFF2431 -3.1 -4.1 Chaperone protein HscA compare
GFF2991 -3.0 -3.5 Tyrosine recombinase XerD compare
GFF387 -2.9 -2.9 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF1634 -2.8 -4.1 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF34 -2.7 -2.7 FIG01280259: hypothetical protein compare
GFF3887 -2.7 -4.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF3397 -2.6 -10.1 Transcription-repair coupling factor compare
GFF880 -2.5 -11.1 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF3054 -2.5 -5.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF4891 -2.4 -11.8 Transport ATP-binding protein CydD compare
GFF3886 -2.4 -5.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF381 -2.4 -4.9 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF2433 -2.3 -6.2 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF236 -2.3 -1.1 FIG00545237: hypothetical protein compare
GFF4890 -2.3 -9.4 Transport ATP-binding protein CydC compare
GFF1699 -2.2 -1.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF4788 -2.2 -3.1 RNA polymerase sigma factor RpoS compare
GFF2906 -2.1 -4.2 Protein yifE compare
GFF4837 -2.1 -10.3 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF2990 -2.0 -7.5 Thiol:disulfide interchange protein DsbC compare
GFF2889 -2.0 -8.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF3874 -2.0 -1.4 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF3772 -2.0 -1.7 1-phosphofructokinase (EC 2.7.1.56) compare
GFF2016 -1.9 -6.9 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF242 -1.9 -4.6 Magnesium and cobalt transport protein CorA compare
GFF2886 -1.8 -4.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF3830 -1.8 -1.2 Uncharacterized protein YehA precursor compare
GFF633 -1.8 -4.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3862 -1.8 -3.2 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF2104 -1.7 -2.8 ATP-dependent RNA helicase SrmB compare
GFF3901 -1.7 -1.8 Phosphomannomutase (EC 5.4.2.8) compare
GFF2051 -1.7 -9.1 Predicted transcriptional regulator of pyridoxine metabolism compare
GFF2943 -1.7 -1.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF4839 -1.6 -8.5 BarA sensory histidine kinase (= VarS = GacS) compare
GFF2434 -1.6 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF494 -1.6 -8.4 Protein yhjK compare
GFF269 -1.6 -3.3 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF3644 -1.6 -3.6 Electron transport complex protein RnfD compare
GFF2867 -1.6 -1.7 hypothetical protein compare
GFF1735 -1.6 -4.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF391 -1.5 -1.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF2698 -1.5 -3.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF4733 -1.5 -1.2 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF2878 -1.5 -8.7 Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) compare
GFF175 -1.5 -4.2 DedA family inner membrane protein YabI compare
GFF3642 -1.5 -3.1 Electron transport complex protein RnfE compare
GFF3794 -1.4 -4.0 SanA protein compare
GFF2216 -1.4 -6.6 DNA polymerase I (EC 2.7.7.7) compare
GFF1930 -1.4 -2.5 DedD protein compare
GFF3230 -1.4 -1.2 Transposase compare
GFF1311 -1.4 -6.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
GFF365 -1.4 -3.4 Protein YicC compare
GFF4647 -1.4 -6.4 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1058 -1.4 -6.4 NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) compare
GFF4411 -1.4 -4.9 Putative NAD(P)-dependent oxidoreductase EC-YbbO compare
GFF2891 -1.4 -4.6 Thioredoxin compare
GFF4026 -1.3 -2.3 Flagellar biosynthesis protein FliT compare
GFF1256 -1.3 -2.2 Chromosome (plasmid) partitioning protein ParA compare
GFF4789 -1.3 -3.2 Lipoprotein NlpD compare
GFF4355 -1.3 -1.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3040 -1.3 -5.7 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
GFF3877 -1.3 -2.3 GDP-mannose mannosyl hydrolase (EC 3.6.1.-) compare
GFF3379 -1.2 -6.4 FIG004453: protein YceG like compare
GFF156 -1.2 -1.4 rRNA small subunit methyltransferase H compare
GFF4103 -1.2 -6.0 probable exported protein STY0357 compare
GFF2973 -1.2 -5.9 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF4646 -1.2 -7.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1571 -1.2 -0.8 FIG00638334: hypothetical protein compare
GFF3725 -1.2 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) compare
GFF3324 -1.2 -1.0 putative periplasmic protein compare
GFF3643 -1.2 -3.4 Electron transport complex protein RnfG compare
GFF4784 -1.2 -1.9 Transcriptional regulator, MarR family compare
GFF4290 -1.2 -3.2 DNA recombination-dependent growth factor C compare
GFF2819 -1.2 -5.7 Ribonuclease D (EC 3.1.26.3) compare
GFF189 -1.1 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2907 -1.1 -2.0 HTH-type transcriptional regulator hdfR compare
GFF2389 -1.1 -1.3 Trk system potassium uptake protein TrkA compare
GFF3570 -1.1 -1.1 FIG074102: hypothetical protein compare
GFF2484 -1.1 -0.9 FIG00639146: hypothetical protein compare
GFF1936 -1.1 -3.6 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) compare
GFF597 -1.1 -2.0 DNA-damage-inducible protein J compare
GFF662 -1.1 -5.4 Pectinesterase (EC 3.1.1.11) compare
GFF4027 -1.1 -0.9 Flagellar biosynthesis protein FliS compare
GFF4192 -1.1 -3.5 DNA-binding protein HU-alpha compare
GFF2887 -1.1 -3.8 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
GFF2566 -1.1 -4.7 Transcriptional regulator, TetR family compare
GFF3533 -1.1 -1.3 FIG00638687: hypothetical protein compare
GFF2160 -1.1 -1.8 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF342 -1.0 -1.1 FIG01046502: hypothetical protein compare
GFF3041 -1.0 -1.0 hypothetical protein compare
GFF2303 -1.0 -3.7 Putative uncharacterized protein YiiQ compare
GFF982 -1.0 -5.9 Putative cytoplasmic protein USSDB7A compare
GFF1114 -1.0 -1.8 FIG01200701: possible membrane protein compare
GFF4162 -1.0 -2.9 DNA repair protein RecN compare
GFF3012 -1.0 -3.7 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4545 -1.0 -3.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF1423 -1.0 -5.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) compare
GFF2194 -1.0 -1.6 FIG01046050: hypothetical protein compare
GFF3252 -1.0 -2.5 Inner membrane protein YccF compare
GFF3022 -1.0 -5.3 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) compare
GFF366 -1.0 -1.9 Ribonuclease PH (EC 2.7.7.56) compare
GFF1675 -1.0 -2.4 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF4250 -0.9 -0.9 Putative copper chaperone compare
GFF2845 -0.9 -2.8 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1734 -0.9 -2.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF4118 -0.9 -1.3 tRNA-Thr-CGT compare
GFF2733 -0.9 -2.3 Membrane protein YciC, linked to IspA compare
GFF716 -0.9 -3.1 L,D-transpeptidase YbiS compare
GFF928 -0.9 -2.2 Endoribonuclease L-PSP compare
GFF2348 -0.9 -2.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF1472 -0.9 -1.2 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF588 -0.9 -3.1 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
GFF948 -0.9 -2.2 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF4252 -0.9 -7.2 Type III restriction-modification system methylation subunit (EC 2.1.1.72) compare
GFF1504 -0.9 -2.8 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
GFF2415 -0.9 -2.5 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF3621 -0.9 -3.0 Glutaredoxin-related protein compare
GFF4060 -0.9 -0.9 putative cytoplasmic protein compare
GFF757 -0.9 -1.5 putative sensory transduction regulator compare
GFF4772 -0.9 -0.9 hypothetical protein compare
GFF3723 -0.9 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
GFF119 -0.9 -0.7 hypothetical protein compare
GFF2719 -0.9 -1.3 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF309 -0.9 -1.1 Putative transcriptional regulator of unknown carbohydrate utilization cluster, GntR family compare
GFF1334 -0.8 -0.7 Uncharacterized protein YohL compare
GFF2276 -0.8 -0.7 Manganese superoxide dismutase (EC 1.15.1.1) compare
GFF3229 -0.8 -1.5 Secreted effector protein compare
GFF2934 -0.8 -2.6 YrbA protein compare
GFF728 -0.8 -2.7 Dipeptide transport system, periplasmic component in protein degradation cluster compare
GFF4379 -0.8 -5.9 RND efflux system, inner membrane transporter CmeB compare
GFF1502 -0.8 -3.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF1363 -0.8 -1.8 hypothetical protein compare
GFF190 -0.8 -3.4 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF3664 -0.8 -2.4 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF3555 -0.8 -0.8 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF1845 -0.8 -2.1 Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) compare
GFF4820 -0.8 -2.3 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) compare
GFF360 -0.8 -0.8 hypothetical protein compare
GFF925 -0.8 -1.0 hypothetical protein compare
GFF2249 -0.8 -1.2 Putative merR family bacterial regulatory protein compare
GFF2864 -0.8 -1.0 Mobile element protein compare
GFF4256 -0.8 -0.9 putative Cytochrome bd2, subunit II compare
GFF1343 -0.8 -0.7 Attachment invasion locus protein precursor compare
GFF3270 -0.8 -1.8 FIG01046223: hypothetical protein compare
GFF4461 -0.8 -2.6 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
GFF816 -0.8 -1.0 Phage tail assembly protein I compare
GFF661 -0.8 -3.3 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF1186 -0.8 -2.0 VapC toxin protein compare
GFF454 -0.8 -2.2 Cold shock protein CspA compare
GFF4491 -0.8 -3.0 Enterobactin esterase compare
GFF3154 -0.8 -1.4 Zinc transporter ZupT compare
GFF4700 -0.7 -1.6 Glucitol operon activator protein compare
GFF3560 -0.7 -1.7 Iron-sulfur cluster assembly ATPase protein SufC compare
GFF1863 -0.7 -0.7 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF3613 -0.7 -3.2 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF985 -0.7 -1.6 Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase compare
GFF2641 -0.7 -1.2 hypothetical protein compare
GFF3404 -0.7 -4.8 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) compare
GFF1303 -0.7 -0.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4600 -0.7 -0.9 SeqA protein, negative modulator of initiation of replication compare
GFF3257 -0.7 -3.4 hemimethylated DNA binding protein YccV compare
GFF3384 -0.7 -3.5 PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) compare
GFF1950 -0.7 -2.3 Chorismate synthase (EC 4.2.3.5) compare
GFF1459 -0.7 -2.0 hypothetical protein compare
GFF4865 -0.7 -2.8 Glycine cleavage system transcriptional activator GcvA compare
GFF2704 -0.7 -1.2 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 compare
GFF2695 -0.7 -1.9 Putative inner membrane protein compare
GFF3409 -0.7 -2.1 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF3985 -0.7 -0.5 Integrase compare
GFF4736 -0.7 -3.2 Oxygen-regulated invasion protein OrgA compare
GFF4286 -0.7 -2.3 Shikimate kinase III (EC 2.7.1.71) compare
GFF380 -0.7 -3.3 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF991 -0.7 -0.5 hypothetical protein compare
GFF443 -0.7 -0.8 FIG01045230: hypothetical protein compare
GFF1815 -0.7 -1.2 Electron transport complex protein RnfA compare
GFF3256 -0.7 -1.2 Succinyl-CoA synthetase, alpha subunit-related enzymes compare


Specific Phenotypes

For 3 genes in this experiment

For phage EIP16_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage EIP16_phage across organisms