Experiment set4IT050 for Agrobacterium fabrum C58

Compare to:

R2A with Carbenicillin disodium salt 150 mM

200 most important genes:

  gene name fitness t score description  
Atu1688 -3.4 -4.0 indole-3-glycerol-phosphate synthase compare
Atu1687 -3.3 -7.7 anthranilate phosphoribosyltransferase compare
Atu0017 -3.1 -3.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0184 -3.0 -3.2 glucokinase compare
Atu3469 -2.9 -3.3 phosphoglyceromutase compare
Atu4149 -2.9 -9.3 UDP-glucose 6-dehydrogenase compare
Atu8095 -2.9 -10.6 hypothetical protein compare
Atu2289 -2.8 -11.9 anthranilate synthase component I and II compare
Atu0486 -2.8 -6.4 dihydroorotate dehydrogenase compare
Atu0298 -2.4 -7.1 orotidine 5 compare
Atu1844 -2.4 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0399 -2.3 -6.0 dihydroorotase compare
Atu1028 -2.3 -3.1 hypothetical protein compare
Atu1739 -2.3 -6.6 permease compare
Atu0400 -2.2 -5.9 orotate phosphoribosyltransferase compare
Atu2577 -2.2 -13.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1446 -2.2 -3.7 two component response regulator compare
Atu1308 -2.2 -4.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2590 -2.1 -8.3 hypothetical protein compare
Atu4616 -2.1 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu0784 -2.1 -4.7 hypothetical protein compare
Atu2585 -2.1 -4.7 hypothetical protein compare
Atu1030 -2.0 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1140 -1.9 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3008 -1.8 -2.0 hypothetical protein compare
Atu2067 -1.8 -1.8 hypothetical protein compare
Atu0026 -1.8 -1.5 hypothetical protein compare
Atu2583 -1.8 -9.3 glycosyltransferase compare
Atu0777 -1.8 -1.3 hypothetical protein compare
Atu2592 -1.8 -4.9 hypothetical protein compare
Atu2582 -1.8 -5.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4773 -1.8 -2.7 two component response regulator compare
Atu3763 -1.8 -2.3 hypothetical protein compare
Atu3009 -1.8 -2.2 exopolysaccharide production protein compare
Atu3754 -1.7 -8.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1354 -1.7 -1.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0434 -1.7 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1307 -1.6 -6.0 dihydroorotase compare
Atu4148 -1.6 -4.2 UDP-glucuronic acid epimerase compare
Atu1686 -1.6 -7.7 peptidyl-prolyl cis-trans isomerse D compare
Atu0647 -1.6 -5.6 phosphoribosylamine--glycine ligase compare
Atu1075 -1.5 -5.7 amidophosphoribosyltransferase compare
Atu0346 -1.5 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3755 -1.5 -5.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2113 -1.5 -3.4 N-acetylmuramoyl-L-alanine amidase compare
Atu1845 -1.5 -3.5 phosphoribosylformylglycinamidine synthase I compare
Atu2591 -1.4 -4.7 glucosyltransferase compare
Atu6114 -1.4 -3.6 hypothetical protein compare
Atu4346 -1.4 -4.0 hypothetical protein compare
Atu3120 -1.4 -1.6 hypothetical protein compare
Atu1445 -1.4 -6.1 two component sensor kinase compare
Atu1149 -1.3 -1.6 adenylate cyclase compare
Atu4317 -1.3 -2.6 TetR family transcriptional regulator compare
Atu0640 -1.3 -1.4 hypothetical protein compare
Atu5513 -1.3 -2.3 cold shock protein compare
Atu2692 -1.3 -3.3 intracellular septation protein compare
Atu2650 -1.3 -6.9 glycerol-3-phosphate dehydrogenase compare
Atu4792 -1.2 -2.8 hypothetical protein compare
Atu3012 -1.2 -1.6 hypothetical protein compare
Atu0185 -1.2 -2.2 methylglyoxal synthase compare
Atu4075 -1.1 -4.9 glycogen synthase compare
Atu0435 -1.1 -1.9 tRNA-Gly compare
Atu2710 -1.1 -6.1 hypothetical protein compare
Atu3017 -1.1 -1.8 phosphoglyceromutase compare
Atu4614 -1.1 -6.0 glycosyltransferase compare
Atu0976 -1.1 -2.3 cycL protein compare
Atu2073 -1.1 -2.8 membrane protein compare
Atu0977 -1.1 -3.4 serine protease DO-like protease compare
Atu0972 -1.1 -6.4 lipA protein compare
Atu2183 -1.1 -5.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0421 -1.0 -1.5 ABC transporter, membrane spanning protein compare
Atu0401 -1.0 -3.9 fructokinase compare
Atu3739 -1.0 -1.8 phosphoglycerate kinase compare
Atu1163 -1.0 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1141 -1.0 -3.7 Phosphoribosylglycinamide synthetase compare
Atu2584 -1.0 -2.1 hypothetical protein compare
Atu3697 -1.0 -5.1 ATP-dependent protease LA 2 compare
Atu0502 -1.0 -4.8 acetyl-CoA acetyltransferase compare
Atu4618 -1.0 -6.9 dTDP-rhamnose-3,5-epimerase compare
Atu2125 -1.0 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -1.0 -0.9 hypothetical protein compare
Atu8088 -1.0 -1.2 hypothetical protein compare
Atu8087 -1.0 -1.2 putative peptidoglycan binding protein compare
Atu4617 -1.0 -5.9 dTDP-D-glucose-4,6-dehydratase compare
Atu4677 -1.0 -1.0 hypothetical protein compare
Atu2207 -1.0 -2.5 two component sensor kinase compare
Atu0723 -1.0 -1.8 FAD dependent oxidoreductase compare
Atu0598 -1.0 -3.8 phosphogluconate dehydratase compare
Atu4819 -0.9 -3.0 hypothetical protein compare
Atu1468 -0.9 -4.8 hypothetical protein compare
Atu2787 -0.9 -1.0 hypothetical protein compare
Atu4887 -0.9 -3.6 hypothetical protein compare
Atu8056 -0.9 -1.0 hypothetical protein compare
Atu4050 -0.9 -1.9 UTP-glucose-1-phosphate uridylyltransferase compare
Atu1380 -0.9 -4.3 zinc metallopeptidase compare
Atu0923 -0.9 -4.3 hypothetical protein compare
Atu1850 -0.9 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu3353 -0.9 -6.0 mannose-1-phosphate guanylyltransferase compare
Atu2548 -0.9 -6.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4613 -0.9 -6.0 glycosyltransferase compare
Atu1874 -0.9 -1.9 RecA protein compare
Atu1339 -0.9 -3.9 ribonuclease E compare
Atu4541 -0.9 -4.3 carboxymuconolactone decarboxylase compare
Atu3598 -0.9 -1.2 thiol:disulfide interchange protein compare
Atu3001 -0.9 -2.0 hypothetical protein compare
Atu0269 -0.9 -3.3 exodeoxyribonuclease VII large subunit compare
Atu3773 -0.8 -1.9 hypothetical protein compare
Atu4853 -0.8 -4.6 hypothetical protein compare
Atu3727 -0.8 -3.5 hypothetical protein compare
Atu0093 -0.8 -2.4 Recombination protein compare
Atu4416 -0.8 -2.8 phosphopantetheinyl transferase compare
Atu1359 -0.8 -0.9 dnaK deletion suppressor protein compare
Atu3011 -0.8 -2.6 ArsR family transcriptional regulator compare
Atu1099 -0.8 -4.5 hypothetical protein compare
Atu0501 -0.8 -5.6 acyl-CoA dehydrogenase compare
Atu5125 -0.8 -2.3 GntR family transcriptional regulator compare
Atu6189 -0.8 -0.8 protein secretion chaperone compare
Atu0322 -0.8 -2.4 enoyl CoA hydratase compare
Atu3034 -0.8 -3.7 ROK family transcriptional regulator compare
Atu3013 -0.8 -4.1 hypothetical protein compare
Atu3475 -0.8 -4.3 acetyl-CoA C-acetyltransferase compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu3461 -0.8 -2.3 GntR family transcriptional regulator compare
Atu2436 -0.8 -2.8 hypothetical protein compare
Atu4888 -0.8 -3.7 hypothetical protein compare
Atu0272 -0.8 -3.3 transcriptional regulator, MarR family compare
Atu4418 -0.8 -3.2 glutaryl-CoA dehydrogenase compare
Atu1466 -0.7 -1.5 hypothetical protein compare
Atu4868 -0.7 -4.7 oxidoreductase compare
Atu3042 -0.7 -3.7 hypothetical protein compare
Atu3519 -0.7 -3.3 peptidyl-prolyl cis-trans isomerase compare
Atu1810 -0.7 -0.9 hypothetical protein compare
Atu0062 -0.7 -3.8 transcriptional regulator, ROK family compare
Atu2267 -0.7 -2.9 hypothetical protein compare
Atu1291 -0.7 -1.9 hypothetical protein compare
Atu0368 -0.7 -2.7 tRNA pseudouridine synthase I compare
Atu0419 -0.7 -2.3 two component sensor kinase compare
Atu3054 -0.7 -5.0 hypothetical protein compare
Atu2824 -0.7 -2.5 hypothetical protein compare
Atu4866 -0.7 -4.9 hypothetical protein compare
Atu4711 -0.7 -2.8 two component sensor kinase compare
Atu0499 -0.7 -4.6 hypothetical protein compare
Atu4884 -0.7 -2.6 hypothetical protein compare
Atu3706 -0.7 -3.5 D-3-phosphoglycerate dehydrogenase compare
Atu0130 -0.7 -2.4 cytidine deaminase compare
Atu3473 -0.7 -4.0 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu4857 -0.7 -4.3 mobilization protein C compare
Atu3031 -0.7 -1.2 hypothetical protein compare
Atu2063 -0.7 -1.6 hypothetical protein compare
Atu3757 -0.7 -0.7 hypothetical protein compare
Atu2040 -0.7 -2.4 phosphoserine phosphatase compare
Atu1475 -0.7 -1.8 hypothetical protein compare
Atu4852 -0.7 -2.3 hypothetical protein compare
Atu3730 -0.7 -0.9 hypothetical protein compare
Atu3460 -0.7 -2.7 RhtB family transporter compare
Atu3014 -0.7 -1.9 hypothetical protein compare
Atu2237 -0.7 -2.3 cytochrome c1 compare
Atu0551 -0.7 -1.9 flagellar protein FLGA precursor compare
Atu0201 -0.7 -1.1 hypothetical protein compare
Atu3019 -0.6 -3.3 hypothetical protein compare
Atu1644 -0.6 -1.4 hypothetical protein compare
Atu4166 -0.6 -1.6 UDP-glucose 4-epimerase compare
Atu4847 -0.6 -4.3 ribokinase compare
Atu0837 -0.6 -3.6 transcriptional regulator, MarR family compare
Atu3886 -0.6 -3.5 lysophospholipase compare
Atu0190 -0.6 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0103 -0.6 -4.3 penicillin-binding protein compare
Atu2804 -0.6 -4.5 cobaltochelatase subunit compare
Atu0070 -0.6 -2.6 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1620 -0.6 -3.7 triosephosphate isomerase compare
Atu1067 -0.6 -3.7 penicillin-binding protein compare
Atu3020 -0.6 -3.7 GntR family transcriptional regulator compare
Atu2286 -0.6 -0.8 hypothetical protein compare
Atu2052 -0.6 -3.2 hypothetical protein compare
Atu4875 -0.6 -2.0 hypothetical protein compare
Atu3311 -0.6 -5.0 phosphomannose isomerase compare
Atu4877 -0.6 -3.6 short-chain dehydrogenase compare
Atu1646 -0.6 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1803 -0.6 -3.2 cold shock protein compare
Atu4366 -0.6 -1.8 short chain dehydrogenase compare
Atu0503 -0.6 -4.5 enoyl-CoA hydratase compare
Atu2802 -0.6 -3.4 precorrin-8X methylmutase compare
Atu3023 -0.6 -3.9 sugar ABC transporter permease compare
Atu4864 -0.6 -2.8 MarR family transcriptional regulator compare
Atu0331 -0.6 -0.8 sigma-54 modulation protein compare
Atu0636 -0.6 -3.1 hypothetical protein compare
Atu5164 -0.6 -0.6 type IV secretion protein AvhB3 compare
Atu2379 -0.6 -3.9 phosphomannomutase compare
Atu4471 -0.6 -3.0 ABC transporter substrate-binding protein compare
Atu4094 -0.6 -2.0 hypothetical protein compare
Atu4615 -0.6 -3.5 glucose-1-phosphate thymidylyltransferase compare
Atu3485 -0.6 -4.1 short chain dehydrogenase compare
Atu3471 -0.6 -3.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu2238 -0.6 -2.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4878 -0.6 -2.6 hypothetical protein compare
Atu1495 -0.6 -1.7 hypothetical protein compare
Atu4610 -0.6 -4.2 sugar nucleotide epimerase/dehydratase compare
Atu4468 -0.6 -3.6 iron transport ABC transporter permease compare
Atu2798 -0.6 -2.0 precorrin-6y methyltransferase compare
Atu1679 -0.6 -1.1 peptidyl prolyl cis-trans isomerase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Carbenicillin disodium salt across organisms