Experiment set4IT048 for Agrobacterium fabrum C58

Compare to:

R2A with Tetracycline hydrochloride 0.002 mM

200 most important genes:

  gene name fitness t score description  
Atu1131 -3.9 -6.5 outer membrane protein compare
Atu3634 -3.8 -4.6 penicillin-binding protein dacf precursor compare
Atu2710 -3.8 -6.3 hypothetical protein compare
Atu3613 -3.7 -6.6 hypothetical protein compare
Atu4166 -3.4 -2.0 UDP-glucose 4-epimerase compare
Atu2242 -3.3 -9.9 ABC transporter, nucleotide binding/ATPase protein conserved
Atu1359 -3.2 -1.4 dnaK deletion suppressor protein compare
Atu4346 -3.1 -6.8 hypothetical protein compare
Atu2577 -3.0 -9.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0030 -2.7 -1.7 phosphocarrier protein HPr compare
Atu4149 -2.6 -3.1 UDP-glucose 6-dehydrogenase compare
Atu2551 -2.6 -12.4 RND multidrug efflux transporter compare
Atu0972 -2.6 -6.2 lipA protein compare
Atu2550 -2.4 -11.3 RND multidrug efflux membrane permease conserved
Atu8180 -2.4 -5.3 hypothetical protein compare
Atu2590 -2.4 -2.8 hypothetical protein compare
Atu4206 -2.2 -6.5 tetracycline resistance protein conserved
Atu0780 -2.2 -6.5 hypothetical protein compare
Atu1149 -2.1 -1.2 adenylate cyclase compare
Atu4217 -2.0 -1.4 TetR family transcriptional regulator compare
Atu4617 -2.0 -9.8 dTDP-D-glucose-4,6-dehydratase compare
Atu0186 -2.0 -6.4 penicillin-insensitive murein endopeptidase compare
Atu3012 -2.0 -1.9 hypothetical protein compare
Atu0184 -1.9 -1.8 glucokinase compare
Atu1844 -1.9 -2.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3311 -1.9 -11.6 phosphomannose isomerase compare
Atu1028 -1.8 -1.5 hypothetical protein compare
Atu2582 -1.8 -1.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3733 -1.8 -2.3 hypothetical protein compare
Atu3032 -1.8 -4.0 hypothetical protein compare
Atu1446 -1.8 -1.7 two component response regulator compare
Atu3353 -1.8 -9.1 mannose-1-phosphate guanylyltransferase compare
Atu1030 -1.8 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1642 -1.8 -2.0 hypothetical protein compare
Atu1308 -1.7 -3.0 aspartate carbamoyl transferase catalytic subunit compare
Atu3754 -1.7 -2.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3763 -1.7 -1.6 hypothetical protein compare
Atu1303 -1.6 -7.4 exoribonuclease compare
Atu4615 -1.6 -6.5 glucose-1-phosphate thymidylyltransferase compare
Atu0399 -1.6 -3.7 dihydroorotase compare
Atu0115 -1.6 -1.0 hypothetical protein compare
Atu0353 -1.6 -5.7 acetyltransferase compare
Atu3183 -1.6 -1.0 hypothetical protein compare
Atu0043 -1.6 -1.1 imidazoleglycerol-phosphate dehydratase compare
Atu0036 -1.6 -2.3 hypothetical protein compare
Atu2489 -1.6 -5.7 hypothetical protein compare
Atu0525 -1.5 -2.9 transcriptional regulator, LuxR family compare
Atu2583 -1.5 -2.3 glycosyltransferase compare
Atu3608 -1.5 -3.9 hypothetical protein compare
Atu4527 -1.5 -1.6 hypothetical protein compare
Atu0647 -1.5 -4.5 phosphoribosylamine--glycine ligase compare
Atu0359 -1.5 -5.2 hemolysin compare
Atu1774 -1.5 -6.2 ABC transporter, substrate binding protein (peptide) compare
Atu4618 -1.5 -6.9 dTDP-rhamnose-3,5-epimerase compare
Atu4890 -1.5 -1.5 IS426 transposase compare
Atu0103 -1.5 -6.7 penicillin-binding protein compare
Atu2379 -1.5 -4.8 phosphomannomutase compare
Atu0368 -1.5 -3.2 tRNA pseudouridine synthase I compare
Atu5475 -1.4 -1.7 hypothetical protein compare
Atu3798 -1.4 -4.4 TetR family transcriptional regulator compare
Atu1327 -1.4 -2.4 NADH-ubiquinone oxidoreductase compare
Atu4072 -1.4 -1.4 nodulation protein N compare
Atu2726 -1.4 -8.5 pyruvate carboxylase compare
Atu2183 -1.4 -5.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4418 -1.4 -3.4 glutaryl-CoA dehydrogenase compare
Atu4148 -1.4 -0.9 UDP-glucuronic acid epimerase compare
Atu2684 -1.4 -0.9 hypothetical protein compare
Atu5142 -1.3 -1.4 hypothetical protein compare
Atu0190 -1.3 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3697 -1.3 -4.1 ATP-dependent protease LA 2 compare
Atu3759 -1.3 -1.3 hypothetical protein compare
Atu3598 -1.3 -1.2 thiol:disulfide interchange protein compare
Atu2045 -1.3 -3.6 HFLK protein compare
Atu3496 -1.3 -1.9 hypothetical protein compare
Atu0029 -1.3 -2.3 S-adenosylhomocysteine hydrolase compare
Atu0413 -1.3 -1.7 stress induced protein compare
Atu2140 -1.2 -1.8 hypothetical protein compare
Atu1333 -1.2 -2.0 outer membrane protein compare
Atu2584 -1.2 -1.7 hypothetical protein compare
Atu1307 -1.2 -3.4 dihydroorotase compare
Atu4613 -1.2 -6.8 glycosyltransferase compare
Atu2615 -1.2 -5.0 hypothetical protein compare
Atu2591 -1.2 -2.2 glucosyltransferase compare
Atu0233 -1.2 -4.6 lysozyme compare
Atu1634 -1.2 -1.4 hypothetical protein compare
Atu0690 -1.2 -1.3 hypothetical protein compare
Atu0346 -1.2 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4477 -1.2 -3.4 TetR family transcriptional regulator compare
Atu6036 -1.2 -0.7 entry-exclusion protein compare
Atu1285 -1.2 -3.4 metal dependent hydrolase compare
Atu0434 -1.2 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0040 -1.2 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1141 -1.2 -4.1 Phosphoribosylglycinamide synthetase compare
Atu1355 -1.2 -4.3 hypothetical protein compare
Atu4614 -1.2 -3.2 glycosyltransferase compare
Atu2753 -1.1 -5.3 ATP-dependent helicase compare
Atu0010 -1.1 -4.2 hypothetical protein compare
Atu2640 -1.1 -2.6 hypothetical protein compare
Atu0039 -1.1 -1.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu2059 -1.1 -4.0 transcriptional regulator, TetR family compare
Atu4873 -1.1 -3.3 TetR family transcriptional regulator compare
Atu0507 -1.1 -4.8 potassium efflux system protein compare
Atu0298 -1.1 -2.9 orotidine 5 compare
Atu3011 -1.1 -2.6 ArsR family transcriptional regulator compare
Atu0400 -1.1 -2.2 orotate phosphoribosyltransferase compare
Atu3008 -1.1 -1.0 hypothetical protein compare
Atu0041 -1.1 -1.0 glutamine amidotransferase compare
Atu2393 -1.1 -7.8 Acr family transporter conserved
Atu2728 -1.1 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu3779 -1.0 -4.1 lytic murein transglycosylase compare
Atu0784 -1.0 -2.3 hypothetical protein compare
Atu1845 -1.0 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu0421 -1.0 -1.0 ABC transporter, membrane spanning protein compare
Atu4161 -1.0 -1.3 hypothetical protein compare
Atu8087 -1.0 -0.8 putative peptidoglycan binding protein compare
Atu5443 -1.0 -3.1 TetR family transcriptional regulator compare
Atu2113 -1.0 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2808 -1.0 -4.3 cobyric acid synthase compare
Atu1075 -1.0 -2.7 amidophosphoribosyltransferase compare
Atu8126 -1.0 -3.4 putative phage tail protein I compare
Atu1868 -1.0 -2.6 tRNA/rRNA methyltransferase compare
Atu4502 -1.0 -3.4 cobalamin synthesis protein compare
Atu4133 -1.0 -2.0 hypothetical protein compare
Atu2044 -1.0 -2.5 HFLC protein compare
Atu1566 -1.0 -0.8 hypothetical protein compare
Atu0354 -1.0 -1.0 ferric uptake regulator compare
Atu2807 -1.0 -3.6 cob(I)alamin adenosyltransferase compare
Atu1339 -1.0 -2.5 ribonuclease E compare
Atu3486 -1.0 -1.9 DeoR family transcriptional regulator compare
Atu5164 -1.0 -0.6 type IV secretion protein AvhB3 compare
Atu2259 -1.0 -3.4 MFS permease compare
Atu0437 -1.0 -4.1 hypothetical protein compare
Atu0467 -1.0 -2.3 hypothetical protein compare
Atu0405 -1.0 -6.8 long-chain-fatty-acid-CoA-ligase compare
Atu0524 -1.0 -2.2 transcriptional regulator, LuxR family compare
Atu0419 -1.0 -1.7 two component sensor kinase compare
Atu1542 -1.0 -3.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1074 -1.0 -5.1 NAD/NADP dependent oxidoreductase compare
Atu3020 -1.0 -4.5 GntR family transcriptional regulator compare
Atu1140 -1.0 -1.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1851 -1.0 -1.8 BolA/YrbA family protein compare
Atu6030 -1.0 -2.5 ORF13 hypothetical protein compare
Atu2239 -0.9 -1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2795 -0.9 -2.6 cobalamin biosynthetic protein compare
Atu1855 -0.9 -5.0 MFS permease compare
Atu8115 -0.9 -4.0 Hypothetical Protein compare
Atu2802 -0.9 -3.6 precorrin-8X methylmutase compare
Atu2592 -0.9 -0.6 hypothetical protein compare
Atu2207 -0.9 -2.3 two component sensor kinase compare
Atu0598 -0.9 -2.8 phosphogluconate dehydratase compare
Atu8118 -0.9 -2.4 putative universal stress protein compare
Atu1620 -0.9 -4.9 triosephosphate isomerase compare
Atu3034 -0.9 -3.0 ROK family transcriptional regulator compare
Atu1677 -0.9 -1.6 queuine tRNA-ribosyltransferase compare
Atu0538 -0.9 -1.9 hypothetical protein compare
Atu6095 -0.9 -3.8 conserved hypothetical protein compare
Atu0897 -0.9 -5.7 protease II compare
Atu0422 -0.9 -1.0 ABC transporter, membrane spanning protein compare
Atu8046 -0.9 -1.7 hypothetical protein compare
Atu5054 -0.9 -2.2 hypothetical protein compare
Atu2073 -0.9 -2.0 membrane protein compare
Atu2248 -0.9 -2.1 hypothetical protein compare
Atu8131 -0.9 -5.6 pH adaption potassium efflux system protein compare
Atu3075 -0.9 -4.3 TetR family transcriptional regulator compare
Atu2278 -0.9 -4.7 transcriptional regulator, ArsR family compare
Atu8019 -0.9 -2.2 hypothetical protein compare
Atu0464 -0.9 -3.9 hypothetical protein compare
Atu1076 -0.9 -2.4 colicin V production protein compare
Atu2472 -0.9 -0.8 hypothetical protein compare
Atu3910 -0.9 -3.1 LamB/YcsF family protein compare
Atu6186 -0.9 -2.0 virA/G regulated protein compare
Atu4108 -0.8 -3.4 ribonuclease D compare
Atu5046 -0.8 -1.9 hypothetical protein compare
Atu2804 -0.8 -4.4 cobaltochelatase subunit compare
Atu0142 -0.8 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu1546 -0.8 -1.4 transcriptional regulator, MerR family compare
Atu4864 -0.8 -2.9 MarR family transcriptional regulator compare
Atu4884 -0.8 -2.1 hypothetical protein compare
Atu0185 -0.8 -1.9 methylglyoxal synthase compare
Atu4609 -0.8 -5.4 glycosyltransferase compare
Atu1182 -0.8 -1.1 hypothetical protein compare
Atu4007 -0.8 -4.6 arginase compare
Atu0106 -0.8 -1.8 cold shock protein compare
Atu2812 -0.8 -2.0 hypothetical protein compare
Atu8053 -0.8 -1.3 hypothetical protein compare
Atu2274 -0.8 -3.7 cation efflux system protein compare
Atu0486 -0.8 -2.4 dihydroorotate dehydrogenase compare
Atu3707 -0.8 -1.6 phosphoserine aminotransferase compare
Atu3461 -0.8 -1.3 GntR family transcriptional regulator compare
Atu2267 -0.8 -2.4 hypothetical protein compare
Atu0510 -0.8 -3.8 pH adaption potassium efflux system protein compare
Atu2238 -0.8 -3.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3755 -0.8 -1.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3497 -0.8 -2.7 hypothetical protein compare
Atu3036 -0.8 -1.9 dipeptide ABC transporter permease compare
Atu0280 -0.8 -1.2 hypothetical protein compare
Atu3578 -0.8 -2.7 glycerol-3-phosphate dehydrogenase compare
Atu1495 -0.8 -1.4 hypothetical protein compare
Atu1534 -0.8 -2.9 cytochrome-c oxidase, FixP chain compare
Atu2616 -0.8 -3.7 hypothetical protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Tetracycline hydrochloride in Agrobacterium fabrum C58

For stress Tetracycline hydrochloride across organisms