Experiment set4IT047 for Agrobacterium fabrum C58

Compare to:

R2A with Kanamycin sulfate 0.02 mM

200 most important genes:

  gene name fitness t score description  
Atu3486 -4.6 -3.7 DeoR family transcriptional regulator compare
Atu2684 -4.4 -2.8 hypothetical protein compare
Atu1030 -4.0 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3008 -3.3 -2.1 hypothetical protein compare
Atu2682 -3.2 -4.8 hypothetical protein compare
Atu8054 -3.1 -1.2 hypothetical protein compare
Atu0103 -2.9 -7.3 penicillin-binding protein compare
Atu2692 -2.9 -5.2 intracellular septation protein compare
Atu3469 -2.8 -3.3 phosphoglyceromutase compare
Atu1308 -2.7 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1163 -2.5 -3.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1687 -2.5 -5.3 anthranilate phosphoribosyltransferase compare
Atu0434 -2.4 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1028 -2.3 -2.8 hypothetical protein compare
Atu0400 -2.3 -4.6 orotate phosphoribosyltransferase compare
Atu1667 -2.3 -2.2 hypothetical protein compare
Atu0971 -2.2 -5.4 two component sensor kinase compare
Atu1307 -2.2 -7.5 dihydroorotase compare
Atu2289 -2.1 -9.7 anthranilate synthase component I and II compare
Atu0399 -2.1 -7.0 dihydroorotase compare
Atu1688 -2.1 -3.6 indole-3-glycerol-phosphate synthase compare
Atu6189 -2.1 -1.5 protein secretion chaperone compare
Atu2662 -2.0 -2.4 acetyltransferase compare
Atu1446 -1.8 -3.1 two component response regulator compare
Atu0298 -1.8 -4.9 orotidine 5 compare
Atu2710 -1.8 -7.4 hypothetical protein compare
Atu4541 -1.7 -3.2 carboxymuconolactone decarboxylase compare
Atu0346 -1.7 -4.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0184 -1.7 -2.6 glucokinase compare
Atu0017 -1.7 -2.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0598 -1.6 -5.7 phosphogluconate dehydratase compare
Atu2728 -1.5 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu4616 -1.5 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu0189 -1.4 -4.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4317 -1.4 -1.9 TetR family transcriptional regulator compare
Atu0486 -1.4 -4.9 dihydroorotate dehydrogenase compare
Atu2801 -1.4 -3.8 precorrin-2 C20 methyltransferase compare
Atu2807 -1.4 -4.9 cob(I)alamin adenosyltransferase compare
Atu0972 -1.4 -4.5 lipA protein compare
Atu0031 -1.4 -1.9 PTS system, IIA component compare
Atu2799 -1.4 -4.3 precorrin-6x reductase compare
Atu3754 -1.3 -3.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4166 -1.3 -2.6 UDP-glucose 4-epimerase compare
Atu5470 -1.3 -2.5 hypothetical protein compare
Atu2125 -1.3 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu3763 -1.3 -1.6 hypothetical protein compare
Atu0188 -1.3 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3001 -1.3 -2.9 hypothetical protein compare
Atu2067 -1.2 -1.3 hypothetical protein compare
Atu1405 -1.2 -2.1 transcriptional regulator, GntR family compare
Atu5115 -1.2 -1.1 hypothetical protein compare
Atu2802 -1.2 -5.9 precorrin-8X methylmutase compare
Atu3755 -1.1 -3.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2113 -1.1 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu0471 -1.1 -2.1 hypothetical protein compare
Atu1364 -1.1 -4.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4896 -1.1 -2.5 acetyltransferase compare
Atu2798 -1.1 -2.4 precorrin-6y methyltransferase compare
Atu1542 -1.1 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2832 -1.1 -3.2 tRNA modification GTPase compare
Atu0421 -1.1 -1.4 ABC transporter, membrane spanning protein compare
Atu4897 -1.0 -1.4 hypothetical protein compare
Atu1254 -1.0 -2.0 transcriptional regulator, ArsR family compare
Atu0272 -1.0 -2.0 transcriptional regulator, MarR family compare
Atu2805 -1.0 -3.3 cobalamin synthesis protein compare
Atu2796 -1.0 -4.6 precorrin-4 C11-methyltransferase compare
Atu2809 -1.0 -5.7 cobalamin biosynthesis protein compare
Atu1845 -1.0 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu1891 -1.0 -2.3 cobalamin biosynthesis protein compare
Atu1810 -1.0 -1.1 hypothetical protein compare
Atu4711 -1.0 -4.6 two component sensor kinase compare
Atu3083 -1.0 -2.1 hypothetical protein compare
Atu0784 -1.0 -3.7 hypothetical protein compare
Atu0190 -1.0 -5.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0941 -1.0 -0.8 hypothetical protein compare
Atu1874 -0.9 -1.6 RecA protein compare
Atu1644 -0.9 -2.8 hypothetical protein compare
Atu4075 -0.9 -4.4 glycogen synthase compare
Atu4567 -0.9 -4.4 ROK family transcriptional regulator compare
Atu1774 -0.9 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu4893 -0.9 -3.7 hypothetical protein compare
Atu2808 -0.9 -5.9 cobyric acid synthase compare
Atu3006 -0.9 -3.3 hypothetical protein compare
Atu5513 -0.9 -1.1 cold shock protein compare
Atu2073 -0.9 -3.1 membrane protein compare
Atu3005 -0.9 -1.3 hypothetical protein compare
Atu1140 -0.9 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0319 -0.9 -1.0 ubiquinone biosynthesis protein compare
Atu3013 -0.9 -4.2 hypothetical protein compare
Atu3727 -0.9 -2.3 hypothetical protein compare
Atu3014 -0.9 -1.6 hypothetical protein compare
Atu0647 -0.9 -3.4 phosphoribosylamine--glycine ligase compare
Atu6114 -0.9 -2.0 hypothetical protein compare
Atu1737 -0.8 -2.6 hypothetical protein compare
Atu3031 -0.8 -1.2 hypothetical protein compare
Atu1686 -0.8 -4.9 peptidyl-prolyl cis-trans isomerse D compare
Atu0876 -0.8 -1.3 superoxide dismutase compare
Atu1517 -0.8 -2.6 hypothetical protein compare
Atu1850 -0.8 -2.5 phosphoribosylformylglycinamidine synthetase II compare
Atu0920 -0.8 -2.5 hypothetical protein compare
Atu1110 -0.8 -1.4 cytosol aminopeptidase compare
Atu3963 -0.8 -2.6 GntR family transcriptional regulator compare
Atu2650 -0.8 -4.5 glycerol-3-phosphate dehydrogenase compare
Atu2795 -0.8 -4.4 cobalamin biosynthetic protein compare
Atu0943 -0.8 -1.8 hypothetical protein compare
Atu4618 -0.8 -4.6 dTDP-rhamnose-3,5-epimerase compare
Atu3034 -0.8 -2.7 ROK family transcriptional regulator compare
Atu2183 -0.8 -3.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu0331 -0.8 -2.6 sigma-54 modulation protein compare
Atu3353 -0.8 -4.3 mannose-1-phosphate guanylyltransferase compare
Atu2804 -0.8 -4.8 cobaltochelatase subunit compare
Atu2083 -0.8 -1.5 DNA repair protein RecN compare
Atu1677 -0.7 -2.0 queuine tRNA-ribosyltransferase compare
Atu2657 -0.7 -2.4 hypothetical protein compare
Atu4894 -0.7 -3.3 transposase compare
Atu0895 -0.7 -2.2 ABC transporter, substrate binding protein compare
Atu1075 -0.7 -2.9 amidophosphoribosyltransferase compare
Atu4108 -0.7 -3.3 ribonuclease D compare
Atu2640 -0.7 -2.4 hypothetical protein compare
Atu4613 -0.7 -5.5 glycosyltransferase compare
Atu4614 -0.7 -3.2 glycosyltransferase compare
Atu8191 -0.7 -1.3 hypothetical protein compare
Atu4469 -0.7 -1.8 iron ABC transporter permease compare
Atu0726 -0.7 -3.8 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1902 -0.7 -2.9 transketolase compare
Atu0501 -0.7 -4.8 acyl-CoA dehydrogenase compare
Atu4852 -0.7 -2.9 hypothetical protein compare
Atu1844 -0.7 -1.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0638 -0.7 -1.5 hypothetical protein compare
Atu2793 -0.7 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu4887 -0.7 -3.3 hypothetical protein compare
Atu4214 -0.7 -2.5 cold shock protein compare
Atu0322 -0.7 -2.8 enoyl CoA hydratase compare
Atu8052 -0.7 -0.7 hypothetical protein compare
Atu1588 -0.7 -3.7 homoserine dehydrogenase compare
Atu2803 -0.7 -2.2 Cobalamin biosynthesis associated protein compare
Atu0039 -0.7 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu4873 -0.7 -4.4 TetR family transcriptional regulator compare
Atu3176 -0.7 -2.0 GntR family transcriptional regulator compare
Atu3026 -0.7 -3.2 short chain dehydrogenase compare
Atu2208 -0.7 -2.5 secretion chaperone compare
Atu3293 -0.7 -2.5 D-amino acid dehydrogenase small subunit compare
Atu4837 -0.7 -2.6 hypothetical protein compare
Atu4866 -0.7 -2.3 hypothetical protein compare
Atu0401 -0.7 -2.4 fructokinase compare
Atu3476 -0.7 -1.3 AsnC family transcriptional regulator compare
Atu1760 -0.7 -1.0 hypothetical protein compare
Atu3183 -0.7 -0.7 hypothetical protein compare
Atu3578 -0.7 -2.3 glycerol-3-phosphate dehydrogenase compare
Atu1380 -0.7 -2.7 zinc metallopeptidase compare
Atu4093 -0.7 -1.6 hypothetical protein compare
Atu1203 -0.7 -1.4 hypothetical protein compare
Atu1853 -0.7 -1.9 hypothetical protein compare
Atu1422 -0.7 -3.7 transcriptional regulator, MarR family compare
Atu8190 -0.7 -3.5 hypothetical protein compare
Atu1373 -0.6 -3.2 hypothetical protein compare
Atu3010 -0.6 -4.3 hypothetical protein compare
Atu1184 -0.6 -1.0 hypothetical protein compare
Atu3120 -0.6 -0.5 hypothetical protein compare
Atu0038 -0.6 -2.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3054 -0.6 -3.2 hypothetical protein compare
Atu4881 -0.6 -2.7 hypothetical protein compare
Atu8202 -0.6 -2.5 hypothetical protein compare
Atu0185 -0.6 -1.4 methylglyoxal synthase compare
Atu0846 -0.6 -1.1 transcriptional regulator, MarR family compare
Atu2800 -0.6 -1.4 precorrin-3B C17-methyltransferase compare
Atu0062 -0.6 -3.5 transcriptional regulator, ROK family compare
Atu8029 -0.6 -1.0 hypothetical protein compare
Atu0029 -0.6 -2.1 S-adenosylhomocysteine hydrolase compare
Atu3485 -0.6 -3.3 short chain dehydrogenase compare
Atu1213 -0.6 -1.5 hypothetical protein compare
Atu2116 -0.6 -1.9 hypothetical protein compare
Atu3634 -0.6 -1.6 penicillin-binding protein dacf precursor compare
Atu2526 -0.6 -2.5 hypothetical protein compare
Atu0030 -0.6 -0.9 phosphocarrier protein HPr compare
Atu3666 -0.6 -2.6 hypothetical protein compare
Atu1739 -0.6 -2.0 permease compare
Atu1182 -0.6 -1.4 hypothetical protein compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu3095 -0.6 -2.2 hypothetical protein compare
Atu3429 -0.6 -1.0 hypothetical protein compare
Atu4418 -0.6 -1.0 glutaryl-CoA dehydrogenase compare
Atu4864 -0.6 -2.3 MarR family transcriptional regulator compare
Atu4199 -0.6 -2.6 TetR family transcriptional regulator compare
Atu0375 -0.6 -1.4 small heat shock protein compare
Atu2238 -0.6 -3.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4856 -0.6 -4.0 nucleotidyltransferase compare
Atu0886 -0.6 -1.0 hypothetical protein compare
Atu8093 -0.6 -2.4 hypothetical protein compare
Atu8087 -0.6 -0.7 putative peptidoglycan binding protein compare
Atu4888 -0.6 -2.4 hypothetical protein compare
Atu4842 -0.6 -4.2 sugar ABC transporter substrate-binding protein compare
Atu5036 -0.6 -2.8 hypothetical protein compare
Atu1725 -0.6 -0.9 hypothetical protein compare
Atu4144 -0.6 -0.8 hypothetical protein compare
Atu5429 -0.6 -1.4 transcriptional regulator compare
Atu3022 -0.6 -3.1 sugar ABC transporter permease compare
Atu2040 -0.6 -1.9 phosphoserine phosphatase compare
Atu4617 -0.6 -3.0 dTDP-D-glucose-4,6-dehydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Kanamycin sulfate across organisms