Experiment set4IT046 for Escherichia coli BL21

Compare to:

Mixed culture, Halobacteriovorax-10

200 most important genes:

  gene name fitness t score description  
ECD_01046 -4.6 -8.2 OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist compare
ECD_01045 -4.6 -5.3 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_03257 -3.5 -6.8 response regulator in two-component regulatory system with EnvZ compare
ECD_03797 -3.1 -11.2 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_00388 -3.0 -10.5 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_00961 -2.9 -12.2 outer membrane protein A (3a compare
ECD_02254 -2.7 -5.2 chorismate synthase compare
ECD_03625 -2.7 -10.6 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_00933 -2.6 -8.2 outer membrane porin 1a (Ia compare
ECD_03731 -2.6 -8.5 TatABCE protein translocation system subunit compare
ECD_01234 -2.5 -4.5 tryptophan synthase, alpha subunit compare
ECD_00786 -2.4 -11.8 L,D-transpeptidase linking Lpp to murein compare
ECD_02399 -2.4 -3.7 GMP synthetase (glutamine aminotransferase) compare
ECD_03746 -2.3 -11.9 periplasmic protein disulfide isomerase I compare
ECD_00680 -2.3 -9.7 citrate synthase compare
ECD_03488 -2.3 -6.5 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03897 -2.3 -9.5 glucosephosphate isomerase compare
ECD_01925 -2.2 -4.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_00389 -2.1 -7.7 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00333 -2.1 -10.3 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_02238 -2.1 -3.2 colicin V production protein compare
ECD_00003 -2.0 -8.6 homoserine kinase compare
ECD_03067 -2.0 -4.5 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_03755 -2.0 -10.8 glutamine synthetase compare
ECD_00634 -2.0 -4.8 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_00912 -2.0 -6.7 5-enolpyruvylshikimate-3-phosphate synthetase compare
ECD_03256 -2.0 -10.7 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01801 -2.0 -12.2 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_03096 -1.9 -4.3 malate dehydrogenase, NAD(P)-binding compare
ECD_00002 -1.9 -15.5 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
ECD_00911 -1.9 -10.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_02744 -1.9 -12.9 D-3-phosphoglycerate dehydrogenase compare
ECD_03827 -1.9 -13.2 5,10-methylenetetrahydrofolate reductase compare
ECD_00930 -1.9 -3.0 M15A protease-related family periplasmic protein compare
ECD_03241 -1.8 -9.4 3-dehydroquinate synthase compare
ECD_02629 -1.8 -14.4 (p)ppGpp synthetase I/GTP pyrophosphokinase compare
ECD_03017 -1.8 -2.0 outer membrane lipoprotein compare
ECD_03038 -1.8 -11.7 argininosuccinate synthetase compare
ECD_00004 -1.8 -7.4 L-threonine synthase compare
ECD_03590 -1.8 -4.1 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_04264 -1.8 -9.2 3-phosphoserine phosphatase compare
ECD_03708 -1.7 -14.1 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase compare
ECD_01235 -1.7 -4.9 tryptophan synthase, beta subunit compare
ECD_02686 -1.7 -14.6 diaminopimelate decarboxylase, PLP-binding compare
ECD_00074 -1.7 -11.8 3-isopropylmalate dehydratase large subunit compare
ECD_00148 -1.7 -11.8 fused glycosyl transferase and transpeptidase compare
ECD_03707 -1.7 -11.7 methionine biosynthesis regulon transcriptional regulator compare
ECD_00473 -1.7 -8.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
ECD_02400 -1.7 -6.1 IMP dehydrogenase compare
ECD_00176 -1.7 -2.6 periplasmic chaperone compare
ECD_02607 -1.7 -3.6 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_03238 -1.6 -5.6 D-ribulose-5-phosphate 3-epimerase compare
ECD_03844 -1.6 -10.5 acetylglutamate kinase compare
ECD_00240 -1.6 -10.7 gamma-glutamylphosphate reductase compare
ECD_03648 -1.6 -14.0 branched-chain amino acid aminotransferase compare
ECD_03652 -1.6 -13.4 ketol-acid reductoisomerase, NAD(P)-binding compare
ECD_03883 -1.6 -12.0 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_04113 -1.6 -8.6 aspartate carbamoyltransferase, catalytic subunit compare
ECD_00075 -1.6 -12.0 3-isopropylmalate dehydrogenase, NAD(+)-dependent compare
ECD_03845 -1.6 -8.7 argininosuccinate lyase compare
ECD_03649 -1.6 -13.3 dihydroxyacid dehydratase compare
ECD_01924 -1.6 -6.5 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase compare
ECD_02489 -1.5 -12.5 fused chorismate mutase T/prephenate dehydrogenase compare
ECD_02207 -1.5 -5.3 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_00239 -1.5 -6.0 gamma-glutamate kinase compare
ECD_01381 -1.5 -7.6 OPG biosynthetic periplasmic protein compare
ECD_03650 -1.4 -9.8 l-threonine dehydratase, biosynthetic; also known as threonine deaminase compare
ECD_03685 -1.4 -4.1 diaminopimelate epimerase compare
ECD_02443 -1.4 -4.3 serine hydroxymethyltransferase compare
ECD_02508 -1.4 -2.7 tmRNA-binding trans-translation protein compare
ECD_03842 -1.4 -11.4 acetylornithine deacetylase compare
ECD_02449 -1.4 -10.9 phosphoribosylformyl-glycineamide synthetase compare
ECD_03735 -1.4 -8.7 NAD(P)H-flavin reductase compare
ECD_01923 -1.4 -5.9 histidinol-phosphate aminotransferase compare
ECD_03882 -1.4 -8.3 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase compare
ECD_02391 -1.4 -5.2 phosphoribosylaminoimidazole synthetase compare
ECD_02237 -1.4 -8.3 amidophosphoribosyltransferase compare
ECD_00681 -1.4 -2.7 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00036 -1.4 -9.3 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase compare
ECD_00037 -1.4 -10.2 carbamoyl-phosphate synthase large subunit compare
ECD_03506 -1.3 -3.4 RNA polymerase, omega subunit compare
ECD_02212 -1.3 -8.6 NADH:ubiquinone oxidoreductase, chain B compare
ECD_03841 -1.3 -11.2 phosphoenolpyruvate carboxylase compare
ECD_00893 -1.3 -8.2 leucine-responsive global transcriptional regulator compare
ECD_02666 -1.3 -11.2 amino acid N-acetyltransferase and inactive acetylglutamate kinase compare
ECD_03078 -1.3 -10.3 glutamate synthase, 4Fe-4S protein, small subunit compare
ECD_00053 -1.3 -5.7 diadenosine tetraphosphatase compare
ECD_03843 -1.3 -9.7 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding compare
ECD_01572 -1.3 -3.2 pyridine nucleotide transhydrogenase, alpha subunit compare
ECD_03983 -1.3 -10.1 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_04107 -1.3 -3.6 trehalose-6-P hydrolase compare
ECD_00949 -1.3 -2.3 dihydro-orotate oxidase, FMN-linked compare
ECD_02729 -1.3 -4.8 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_00683 -1.2 -4.0 succinate dehydrogenase, flavoprotein subunit compare
ECD_03132 -1.2 -3.2 dehydroshikimate reductase, NAD(P)-binding compare
ECD_02488 -1.2 -5.8 chorismate mutase and prephenate dehydratase, P-protein compare
ECD_04120 -1.2 -8.5 ornithine carbamoyltransferase 1 compare
ECD_03093 -1.2 -3.2 DUF1043 family inner membrane-anchored protein compare
ECD_02726 -1.2 -5.0 site-specific tyrosine recombinase compare
ECD_03077 -1.2 -11.0 glutamate synthase, large subunit compare
ECD_03801 -1.2 -9.1 6-phosphofructokinase I compare
ECD_00056 -1.2 -6.9 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent compare
ECD_00076 -1.2 -8.3 2-isopropylmalate synthase compare
ECD_02073 -1.2 -4.0 DUF218 superfamily vancomycin high temperature exclusion protein compare
ECD_03846 -1.2 -8.7 oxidative and nitrosative stress transcriptional regulator compare
ECD_04086 -1.2 -4.6 3'(2'),5'-bisphosphate nucleotidase compare
ECD_00684 -1.2 -4.4 succinate dehydrogenase, FeS subunit compare
ECD_01922 -1.1 -1.8 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase compare
ECD_02211 -1.1 -6.3 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_02204 -1.1 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_03847 -1.1 -7.9 pyridine nucleotide transhydrogenase, soluble compare
ECD_02210 -1.1 -5.4 NADH:ubiquinone oxidoreductase, chain E compare
ECD_02209 -1.1 -6.2 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02203 -1.1 -6.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_01162 -1.1 -2.3 fatty acid metabolism regulon transcriptional regulator compare
ECD_02393 -1.1 -4.3 polyphosphate kinase, component of RNA degradosome compare
ECD_00081 -1.1 -6.1 transcriptional repressor-activator for carbon metabolism compare
ECD_00073 -1.1 -4.1 3-isopropylmalate dehydratase small subunit compare
ECD_04093 -1.1 -3.5 GGCT-like protein compare
ECD_02600 -1.1 -8.0 adenosine 5'-phosphosulfate kinase compare
ECD_01926 -1.1 -3.6 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_02202 -1.1 -5.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_03031 -1.1 -5.7 polynucleotide phosphorylase/polyadenylase compare
ECD_02201 -1.1 -5.8 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_03119 -1.0 -2.0 global DNA-binding transcriptional dual regulator compare
ECD_03342 -1.0 -6.2 phosphate transporter, low-affinity; tellurite importer compare
ECD_01104 -1.0 -2.7 putative UPF0227 family esterase compare
ECD_01928 -1.0 -1.7 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_02765 -1.0 -4.7 transketolase 1, thiamine triphosphate-binding compare
ECD_00014 -1.0 -2.9 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_03984 -1.0 -6.8 response regulator in two-component regulatory system with BasS compare
ECD_00633 -1.0 -4.0 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_00502 -1.0 -2.4 DLP12 prophage; putative antitermination protein compare
ECD_01160 -1.0 -3.9 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02743 -1.0 -5.5 5-formyltetrahydrofolate cyclo-ligase family protein compare
ECD_02205 -1.0 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_02609 -0.9 -5.7 sulfite reductase, alpha subunit, flavoprotein compare
ECD_00385 -0.9 -4.1 putative lipoprotein compare
ECD_00109 -0.9 -5.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_03499 -0.9 -6.7 orotate phosphoribosyltransferase compare
ECD_03571 -0.9 -1.5 DUF1375 family outer membrane protein compare
ECD_01818 -0.9 -1.5 extracellular Colicin M immunity family protein compare
ECD_03730 -0.9 -2.2 TatABCE protein translocation system subunit compare
ECD_03036 -0.9 -2.9 transcription termination/antitermination L factor compare
ECD_02208 -0.9 -5.9 NADH:ubiquinone oxidoreductase, chain G compare
ECD_00682 -0.9 -3.1 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_02881 -0.9 -6.7 cystathionine beta-lyase, PLP-dependent compare
ECD_03754 -0.9 -5.4 sensory histidine kinase in two-component regulatory system with GlnG compare
ECD_00082 -0.9 -2.2 RsmH methytransferase inhibitor compare
ECD_04038 -0.9 -1.7 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_02245 -0.9 -4.5 erythronate-4-phosphate dehydrogenase compare
ECD_03642 -0.9 -6.4 flhDC operon transcriptional repressor compare
ECD_01489 -0.8 -2.8 transcriptional repressor of multiple antibiotic resistance compare
ECD_00015 -0.8 -4.7 chaperone Hsp40, DnaK co-chaperone compare
ECD_01601 -0.8 -1.6 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_00472 -0.8 -4.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
ECD_03885 -0.8 -5.5 homoserine O-transsuccinylase compare
ECD_01921 -0.8 -1.6 ATP phosphoribosyltransferase compare
ECD_02162 -0.8 -1.9 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_03097 -0.8 -4.4 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_02206 -0.8 -2.6 NADH:ubiquinone oxidoreductase, chain I compare
ECD_03507 -0.8 -4.3 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_03877 -0.8 -2.7 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_02608 -0.8 -5.0 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding compare
ECD_03318 -0.8 -6.2 zinc, cobalt and lead efflux system compare
ECD_01230 -0.8 -1.9 outer membrane protein W compare
ECD_03240 -0.8 -5.9 cell division protein that binds to the septal ring compare
ECD_03486 -0.8 -2.8 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_03260 -0.8 -5.3 ferrous iron transporter, protein A compare
ECD_01080 -0.8 -2.6 endoribonuclease; RNA-binding protein compare
ECD_01058 -0.8 -1.7 dihydro-orotase compare
ECD_02118 -0.8 -3.8 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor compare
ECD_t00019 -0.8 -1.4 tRNA-Lys compare
ECD_01591 -0.8 -1.8 PLP-dependent beta-cystathionase and maltose regulon regulator compare
ECD_01167 -0.8 -1.6 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_03669 -0.7 -4.6 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_03040 -0.7 -1.6 preprotein translocase membrane subunit compare
ECD_02687 -0.7 -5.7 transcriptional activator of lysA; autorepressor compare
ECD_03645 -0.7 -3.0 ilvG operon leader peptide compare
ECD_03825 -0.7 -5.6 cystathionine gamma-synthase, PLP-dependent compare
ECD_02132 -0.7 -1.7 ferredoxin-type protein compare
ECD_01101 -0.7 -2.2 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_01681 -0.7 -1.9 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01749 -0.7 -1.6 D-hexose-6-phosphate epimerase-like protein compare
ECD_02404 -0.7 -1.4 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02034 -0.7 -2.3 hypothetical protein compare
ECD_02314 -0.7 -4.4 cysteine synthase A, O-acetylserine sulfhydrolase A subunit compare
ECD_01586 -0.7 -1.9 beta-D-glucuronidase compare
ECD_01794 -0.7 -4.4 DUF2527 family heat-induced protein compare
ECD_02456 -0.7 -1.7 putative 4Fe-4S cluster-containing protein compare
ECD_01044 -0.7 -1.6 OPG biosynthetic transmembrane succinyltransferase compare
ECD_02286 -0.7 -1.3 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_02465 -0.7 -4.7 anti-sigma E factor, binds RseA compare
ECD_00160 -0.7 -4.8 serine endoprotease (protease Do), membrane-associated compare
ECD_03673 -0.7 -5.2 UDP-N-acetyl-D-mannosaminuronic acid transferase compare
ECD_03643 -0.7 -4.4 UPF0438 family protein compare
ECD_03657 -0.7 -4.5 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_01668 -0.7 -1.4 putative oxidoreductase compare
ECD_02507 -0.7 -1.7 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_03662 -0.7 -5.7 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase compare


Specific Phenotypes

For 2 genes in this experiment