Experiment set4IT044 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with Ffm_phage 1.875 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -7.0 -12.7 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF1634 -3.9 -4.5 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4890 -3.3 -11.9 Transport ATP-binding protein CydC compare
GFF3888 -2.9 -6.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF389 -2.8 -6.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF384 -2.7 -4.0 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF1303 -2.7 -2.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4891 -2.6 -12.2 Transport ATP-binding protein CydD compare
GFF824 -2.6 -5.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4646 -2.5 -13.2 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF3890 -2.4 -3.1 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF2475 -2.2 -3.2 Ribonuclease III (EC 3.1.26.3) compare
GFF3712 -2.1 -4.1 Cyclic AMP receptor protein compare
GFF4647 -2.1 -10.3 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF87 -2.0 -2.4 C4-type zinc finger protein, DksA/TraR family compare
GFF2430 -2.0 -2.9 Ferredoxin, 2Fe-2S compare
GFF2690 -1.9 -2.7 Peptide transport system permease protein SapC compare
GFF2991 -1.9 -3.5 Tyrosine recombinase XerD compare
GFF3667 -1.8 -2.3 Cytidylate kinase (EC 2.7.4.25) compare
GFF2434 -1.8 -1.5 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF3862 -1.7 -4.8 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF2433 -1.7 -5.8 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF4596 -1.6 -4.0 Ferric uptake regulation protein FUR compare
GFF2946 -1.6 -4.4 RNA polymerase sigma-54 factor RpoN compare
GFF2047 -1.6 -7.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF55 -1.6 -7.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF4600 -1.5 -4.4 SeqA protein, negative modulator of initiation of replication compare
GFF1891 -1.5 -3.8 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF4652 -1.4 -3.2 Tol biopolymer transport system, TolR protein compare
GFF122 -1.4 -7.8 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4655 -1.4 -3.0 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF991 -1.4 -1.2 hypothetical protein compare
GFF3901 -1.4 -2.2 Phosphomannomutase (EC 5.4.2.8) compare
GFF230 -1.4 -7.7 Adenylate cyclase (EC 4.6.1.1) compare
GFF1256 -1.4 -3.1 Chromosome (plasmid) partitioning protein ParA compare
GFF2216 -1.3 -6.8 DNA polymerase I (EC 2.7.7.7) compare
GFF1312 -1.3 -4.0 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF2431 -1.3 -2.6 Chaperone protein HscA compare
GFF4250 -1.3 -1.5 Putative copper chaperone compare
GFF1716 -1.2 -4.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2173 -1.2 -5.0 Chromosomal replication initiator protein DnaA compare
GFF1880 -1.2 -7.2 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF3632 -1.2 -2.8 Transcriptional regulator SlyA compare
GFF1076 -1.2 -3.1 Aerobic respiration control protein arcA compare
GFF4026 -1.2 -2.1 Flagellar biosynthesis protein FliT compare
GFF635 -1.2 -4.6 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF1750 -1.1 -2.3 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF4355 -1.1 -1.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF387 -1.1 -3.6 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF4636 -1.1 -4.3 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF2389 -1.1 -1.9 Trk system potassium uptake protein TrkA compare
GFF1890 -1.1 -6.3 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF115 -1.0 -4.3 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF158 -1.0 -5.6 Fructose repressor FruR, LacI family compare
GFF883 -1.0 -6.2 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF629 -1.0 -1.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF1886 -1.0 -6.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF121 -1.0 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2348 -1.0 -3.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF1768 -1.0 -1.1 hypothetical protein compare
GFF1882 -1.0 -4.5 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF1879 -1.0 -6.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2063 -1.0 -1.5 Inner membrane protein YfeZ compare
GFF1881 -1.0 -5.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF2943 -1.0 -1.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF1889 -0.9 -6.1 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF2477 -0.9 -4.5 Translation elongation factor LepA compare
GFF392 -0.9 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF2881 -0.9 -5.7 WzxE protein compare
GFF633 -0.9 -4.3 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3461 -0.9 -1.1 hypothetical protein compare
GFF1737 -0.9 -2.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF2149 -0.9 -4.5 Malate dehydrogenase (EC 1.1.1.37) compare
GFF4798 -0.9 -2.7 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF4637 -0.9 -7.0 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF4353 -0.9 -3.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF4638 -0.9 -4.2 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF267 -0.9 -3.7 Transcriptional activator RfaH compare
GFF3877 -0.9 -1.8 GDP-mannose mannosyl hydrolase (EC 3.6.1.-) compare
GFF3149 -0.9 -5.7 Type I secretion outer membrane protein, TolC precursor compare
GFF2219 -0.9 -5.2 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
GFF3166 -0.8 -2.4 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF192 -0.8 -4.5 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1202 -0.8 -1.2 hypothetical protein compare
GFF4766 -0.8 -1.3 Invasion protein invH precursor compare
GFF381 -0.8 -2.7 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF3706 -0.8 -2.0 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF982 -0.8 -5.5 Putative cytoplasmic protein USSDB7A compare
GFF1887 -0.8 -5.2 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF2704 -0.8 -1.5 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 compare
GFF4354 -0.8 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2663 -0.8 -0.9 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF1953 -0.8 -2.3 Phosphohistidine phosphatase SixA compare
GFF3874 -0.8 -2.9 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF701 -0.8 -1.4 Hypothetical Zinc-finger containing protein compare
GFF587 -0.8 -3.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF3828 -0.8 -1.5 Uncharacterized fimbrial chaperone YehC precursor compare
GFF2994 -0.8 -1.4 YgfY COG2938 compare
GFF1883 -0.8 -4.6 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF2784 -0.8 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
GFF357 -0.8 -2.4 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF880 -0.8 -5.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF739 -0.8 -3.1 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF1435 -0.8 -1.3 Agglutination protein compare
GFF20 -0.7 -4.2 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF276 -0.7 -3.1 Potassium uptake protein TrkH compare
GFF4605 -0.7 -1.0 hypothetical protein compare
GFF2863 -0.7 -1.0 FIG074102: hypothetical protein compare
GFF3533 -0.7 -1.9 FIG00638687: hypothetical protein compare
GFF2249 -0.7 -2.4 Putative merR family bacterial regulatory protein compare
GFF380 -0.7 -4.8 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF1885 -0.7 -4.9 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF906 -0.7 -0.9 FIG01047835: hypothetical protein compare
GFF1221 -0.7 -0.8 hypothetical protein compare
GFF261 -0.7 -1.4 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF4288 -0.7 -3.8 AroM protein compare
GFF2061 -0.7 -3.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF1499 -0.7 -1.4 Ribosome-binding factor A compare
GFF603 -0.7 -1.7 NfuA Fe-S protein maturation compare
GFF2948 -0.7 -3.0 PTS system nitrogen-specific IIA component, PtsN compare
GFF367 -0.7 -4.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF2692 -0.7 -2.1 Peptide transport system ATP-binding protein SapF compare
GFF4270 -0.7 -0.8 FIG00637869: hypothetical protein compare
GFF1736 -0.7 -1.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF2468 -0.7 -1.2 Putative transmembrane transport protein compare
GFF2882 -0.7 -4.3 Lipopolysaccharide biosynthesis protein RffA compare
GFF2160 -0.7 -1.8 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF4118 -0.7 -1.4 tRNA-Thr-CGT compare
GFF4820 -0.7 -3.0 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) compare
GFF3315 -0.7 -1.3 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF287 -0.7 -1.3 hypothetical protein compare
GFF539 -0.7 -1.7 Putative inner membrane protein compare
GFF3248 -0.6 -2.4 Outer membrane protein A precursor compare
GFF4675 -0.6 -2.8 putative RecA/RadA recombinase compare
GFF4439 -0.6 -1.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
GFF4635 -0.6 -1.8 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF4027 -0.6 -1.1 Flagellar biosynthesis protein FliS compare
GFF597 -0.6 -1.9 DNA-damage-inducible protein J compare
GFF3685 -0.6 -3.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF661 -0.6 -3.9 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF3270 -0.6 -1.4 FIG01046223: hypothetical protein compare
GFF4639 -0.6 -0.9 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF4653 -0.6 -1.1 TolA protein compare
GFF752 -0.6 -1.4 Inner membrane protein compare
GFF967 -0.6 -2.5 putative inner membrane protein compare
GFF390 -0.6 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF214 -0.6 -3.4 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) compare
GFF2880 -0.6 -4.0 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF630 -0.6 -3.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2862 -0.6 -1.6 FIG01046381: hypothetical protein compare
GFF4158 -0.6 -1.1 tmRNA-binding protein SmpB compare
GFF4654 -0.6 -2.6 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF873 -0.6 -0.9 hypothetical protein compare
GFF391 -0.6 -1.0 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF3417 -0.6 -2.2 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF3395 -0.6 -1.0 Putative outer membrane protein compare
GFF1646 -0.6 -2.3 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) compare
GFF2891 -0.6 -2.9 Thioredoxin compare
GFF2397 -0.5 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF4806 -0.5 -0.7 FIG01045727: hypothetical protein compare
GFF3648 -0.5 -1.4 tRNA-Arg-TCT compare
GFF2104 -0.5 -1.2 ATP-dependent RNA helicase SrmB compare
GFF4740 -0.5 -3.3 MxiG protein; Pathogenicity 1 island effector protein compare
GFF2244 -0.5 -1.4 FIG074102: hypothetical protein compare
GFF1396 -0.5 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1901 -0.5 -2.8 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF3555 -0.5 -0.7 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF1408 -0.5 -2.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF1985 -0.5 -1.1 tRNA-Ala-GGC compare
GFF3642 -0.5 -2.2 Electron transport complex protein RnfE compare
GFF2311 -0.5 -0.8 Ribonuclease E inhibitor RraA compare
GFF2922 -0.5 -1.4 Transcription elongation factor GreA compare
GFF520 -0.5 -1.5 Universal stress protein A compare
GFF4087 -0.5 -1.0 Mobile element protein compare
GFF3887 -0.5 -2.0 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF1149 -0.5 -1.0 unnamed protein product compare
GFF4641 -0.5 -1.8 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF3041 -0.5 -0.8 hypothetical protein compare
GFF2031 -0.5 -0.7 FIG01046611: hypothetical protein compare
GFF2222 -0.5 -3.2 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF4585 -0.5 -3.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF1356 -0.5 -1.2 Acetate operon repressor compare
GFF3566 -0.5 -0.9 major outer membrane lipoprotein compare
GFF1616 -0.5 -2.1 FIG01047716: hypothetical protein compare
GFF1674 -0.5 -1.3 Universal stress protein C compare
GFF1459 -0.5 -2.1 hypothetical protein compare
GFF2840 -0.5 -1.2 Putative inner membrane protein compare
GFF1584 -0.5 -0.8 Ribonucleotide reduction protein NrdI compare
GFF2415 -0.5 -2.1 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF1038 -0.5 -1.1 FIG01200701: possible membrane protein compare
GFF876 -0.5 -4.1 UPF0131 protein YtfP compare
GFF3288 -0.5 -1.3 Chaperone-modulator protein CbpM compare
GFF1237 -0.5 -0.7 FIG01046247: hypothetical protein compare
GFF522 -0.5 -3.3 Low-affinity inorganic phosphate transporter compare
GFF2289 -0.5 -3.6 Transcriptional regulator, GntR family compare
GFF2989 -0.5 -2.6 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
GFF3772 -0.5 -0.9 1-phosphofructokinase (EC 2.7.1.56) compare
GFF785 -0.5 -1.3 hypothetical protein compare
GFF2386 -0.5 -2.1 FIG004614: Putative cytoplasmic protein compare
GFF1934 -0.5 -1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Ffm_phage across organisms