Experiment set4IT044 for Escherichia coli BL21

Compare to:

Mixed culture, Halobacteriovorax-10

200 most important genes:

  gene name fitness t score description  
ECD_03257 -4.3 -5.1 response regulator in two-component regulatory system with EnvZ compare
ECD_01046 -3.8 -6.8 OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist compare
ECD_03731 -3.3 -5.3 TatABCE protein translocation system subunit compare
ECD_00961 -3.2 -11.8 outer membrane protein A (3a compare
ECD_01045 -3.1 -4.1 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_00933 -2.9 -7.4 outer membrane porin 1a (Ia compare
ECD_03132 -2.9 -3.3 dehydroshikimate reductase, NAD(P)-binding compare
ECD_00786 -2.6 -8.4 L,D-transpeptidase linking Lpp to murein compare
ECD_02238 -2.5 -2.9 colicin V production protein compare
ECD_00388 -2.4 -8.4 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_03488 -2.4 -5.2 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_00333 -2.4 -9.2 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_03746 -2.3 -8.7 periplasmic protein disulfide isomerase I compare
ECD_03797 -2.3 -8.2 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_02607 -2.2 -2.2 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02951 -2.2 -2.4 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_00680 -2.2 -8.9 citrate synthase compare
ECD_03241 -2.1 -8.0 3-dehydroquinate synthase compare
ECD_00930 -2.1 -4.0 M15A protease-related family periplasmic protein compare
ECD_02204 -2.0 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_01925 -2.0 -3.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_03238 -2.0 -4.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_00911 -2.0 -9.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_03256 -2.0 -8.6 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_03067 -2.0 -2.8 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_03625 -1.9 -7.2 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_00004 -1.9 -5.3 L-threonine synthase compare
ECD_00073 -1.9 -3.3 3-isopropylmalate dehydratase small subunit compare
ECD_03827 -1.9 -12.0 5,10-methylenetetrahydrofolate reductase compare
ECD_00003 -1.9 -7.7 homoserine kinase compare
ECD_00389 -1.9 -5.1 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00634 -1.8 -3.9 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02744 -1.8 -10.5 D-3-phosphoglycerate dehydrogenase compare
ECD_03897 -1.8 -6.6 glucosephosphate isomerase compare
ECD_00240 -1.8 -8.5 gamma-glutamylphosphate reductase compare
ECD_03590 -1.8 -3.3 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_00002 -1.8 -12.8 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
ECD_02443 -1.8 -4.9 serine hydroxymethyltransferase compare
ECD_00082 -1.8 -2.9 RsmH methytransferase inhibitor compare
ECD_00912 -1.8 -5.9 5-enolpyruvylshikimate-3-phosphate synthetase compare
ECD_01230 -1.7 -2.0 outer membrane protein W compare
ECD_02400 -1.7 -4.6 IMP dehydrogenase compare
ECD_00074 -1.7 -10.4 3-isopropylmalate dehydratase large subunit compare
ECD_02629 -1.7 -12.3 (p)ppGpp synthetase I/GTP pyrophosphokinase compare
ECD_04264 -1.7 -5.7 3-phosphoserine phosphatase compare
ECD_00081 -1.7 -5.3 transcriptional repressor-activator for carbon metabolism compare
ECD_02686 -1.6 -13.5 diaminopimelate decarboxylase, PLP-binding compare
ECD_00053 -1.6 -5.2 diadenosine tetraphosphatase compare
ECD_02202 -1.6 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_03708 -1.6 -12.3 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase compare
ECD_01235 -1.6 -3.5 tryptophan synthase, beta subunit compare
ECD_01801 -1.6 -8.8 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_03685 -1.6 -3.8 diaminopimelate epimerase compare
ECD_02399 -1.6 -2.7 GMP synthetase (glutamine aminotransferase) compare
ECD_01924 -1.6 -3.5 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase compare
ECD_03845 -1.6 -7.8 argininosuccinate lyase compare
ECD_01923 -1.6 -5.3 histidinol-phosphate aminotransferase compare
ECD_03755 -1.6 -6.9 glutamine synthetase compare
ECD_03882 -1.6 -9.3 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase compare
ECD_03648 -1.5 -11.8 branched-chain amino acid aminotransferase compare
ECD_02489 -1.5 -10.9 fused chorismate mutase T/prephenate dehydrogenase compare
ECD_03707 -1.5 -8.9 methionine biosynthesis regulon transcriptional regulator compare
ECD_02254 -1.5 -2.8 chorismate synthase compare
ECD_03659 -1.5 -2.2 thioredoxin 1 compare
ECD_03652 -1.5 -11.4 ketol-acid reductoisomerase, NAD(P)-binding compare
ECD_03064 -1.5 -3.1 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_03038 -1.5 -9.5 argininosuccinate synthetase compare
ECD_03649 -1.4 -11.1 dihydroxyacid dehydratase compare
ECD_02210 -1.4 -5.1 NADH:ubiquinone oxidoreductase, chain E compare
ECD_00925 -1.4 -2.3 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_00075 -1.4 -9.4 3-isopropylmalate dehydrogenase, NAD(+)-dependent compare
ECD_03843 -1.4 -7.9 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding compare
ECD_00056 -1.4 -6.5 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent compare
ECD_00239 -1.4 -4.6 gamma-glutamate kinase compare
ECD_01926 -1.4 -3.3 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_00893 -1.4 -7.0 leucine-responsive global transcriptional regulator compare
ECD_01921 -1.4 -2.5 ATP phosphoribosyltransferase compare
ECD_02729 -1.4 -3.5 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_03096 -1.4 -2.7 malate dehydrogenase, NAD(P)-binding compare
ECD_03883 -1.4 -9.6 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_03842 -1.4 -10.1 acetylornithine deacetylase compare
ECD_02205 -1.4 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_01250 -1.3 -2.5 DNA topoisomerase I, omega subunit compare
ECD_02391 -1.3 -5.0 phosphoribosylaminoimidazole synthetase compare
ECD_03650 -1.3 -8.4 l-threonine dehydratase, biosynthetic; also known as threonine deaminase compare
ECD_02449 -1.3 -9.8 phosphoribosylformyl-glycineamide synthetase compare
ECD_00148 -1.3 -7.4 fused glycosyl transferase and transpeptidase compare
ECD_03844 -1.3 -7.7 acetylglutamate kinase compare
ECD_04113 -1.3 -6.4 aspartate carbamoyltransferase, catalytic subunit compare
ECD_00684 -1.3 -4.1 succinate dehydrogenase, FeS subunit compare
ECD_03841 -1.3 -9.7 phosphoenolpyruvate carboxylase compare
ECD_02237 -1.3 -5.7 amidophosphoribosyltransferase compare
ECD_03735 -1.3 -6.6 NAD(P)H-flavin reductase compare
ECD_02212 -1.3 -6.0 NADH:ubiquinone oxidoreductase, chain B compare
ECD_01381 -1.3 -5.6 OPG biosynthetic periplasmic protein compare
ECD_03687 -1.3 -1.6 site-specific tyrosine recombinase compare
ECD_02666 -1.3 -9.3 amino acid N-acetyltransferase and inactive acetylglutamate kinase compare
ECD_00473 -1.3 -5.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
ECD_00037 -1.3 -8.4 carbamoyl-phosphate synthase large subunit compare
ECD_01388 -1.3 -2.4 lipoprotein compare
ECD_00014 -1.2 -2.6 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_03077 -1.2 -10.3 glutamate synthase, large subunit compare
ECD_01234 -1.2 -2.5 tryptophan synthase, alpha subunit compare
ECD_00813 -1.2 -2.4 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_03031 -1.2 -6.0 polynucleotide phosphorylase/polyadenylase compare
ECD_04086 -1.2 -3.7 3'(2'),5'-bisphosphate nucleotidase compare
ECD_02206 -1.2 -2.5 NADH:ubiquinone oxidoreductase, chain I compare
ECD_00683 -1.2 -4.3 succinate dehydrogenase, flavoprotein subunit compare
ECD_00076 -1.2 -7.0 2-isopropylmalate synthase compare
ECD_03983 -1.1 -7.1 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_03507 -1.1 -3.2 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_03984 -1.1 -6.5 response regulator in two-component regulatory system with BasS compare
ECD_00036 -1.1 -4.8 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase compare
ECD_00681 -1.1 -1.6 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03037 -1.1 -3.7 ribosome maturation factor for 30S subunits compare
ECD_03086 -1.1 -3.1 sialic acid-inducible nan operon repressor compare
ECD_03075 -1.1 -4.6 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_04120 -1.1 -6.7 ornithine carbamoyltransferase 1 compare
ECD_01779 -1.1 -2.0 putative reactive intermediate deaminase compare
ECD_03342 -1.0 -5.4 phosphate transporter, low-affinity; tellurite importer compare
ECD_01814 -1.0 -1.7 C-N hydrolase family protein compare
ECD_03078 -1.0 -7.0 glutamate synthase, 4Fe-4S protein, small subunit compare
ECD_01167 -1.0 -1.5 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_02209 -1.0 -4.6 NADH:ubiquinone oxidoreductase, chain F compare
ECD_03801 -1.0 -6.7 6-phosphofructokinase I compare
ECD_01629 -1.0 -2.5 transcriptional repressor, hypoxanthine-binding compare
ECD_02201 -1.0 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_02250 -1.0 -1.4 uncharacterized protein compare
ECD_02881 -1.0 -6.4 cystathionine beta-lyase, PLP-dependent compare
ECD_00506 -1.0 -1.7 DLP12 prophage; putative phage lysis protein compare
ECD_02393 -1.0 -3.0 polyphosphate kinase, component of RNA degradosome compare
ECD_02314 -1.0 -5.0 cysteine synthase A, O-acetylserine sulfhydrolase A subunit compare
ECD_02609 -1.0 -5.3 sulfite reductase, alpha subunit, flavoprotein compare
ECD_00472 -1.0 -4.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
ECD_02245 -1.0 -4.3 erythronate-4-phosphate dehydrogenase compare
ECD_02203 -0.9 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_03877 -0.9 -3.7 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_01058 -0.9 -1.0 dihydro-orotase compare
ECD_02738 -0.9 -2.2 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02899 -0.9 -1.6 inner membrane protein compare
ECD_01080 -0.9 -2.4 endoribonuclease; RNA-binding protein compare
ECD_02687 -0.9 -5.7 transcriptional activator of lysA; autorepressor compare
ECD_00015 -0.9 -4.1 chaperone Hsp40, DnaK co-chaperone compare
ECD_01861 -0.9 -3.1 proton conductor component of flagella motor compare
ECD_02073 -0.9 -3.4 DUF218 superfamily vancomycin high temperature exclusion protein compare
ECD_01681 -0.9 -1.8 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03071 -0.9 -3.3 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) compare
ECD_00393 -0.9 -2.2 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_02305 -0.9 -1.8 DUF1323 family putative DNA-binding protein compare
ECD_03660 -0.9 -1.8 rho operon leader peptide compare
ECD_01679 -0.9 -2.0 glutathione peroxidase compare
ECD_00949 -0.9 -1.8 dihydro-orotate oxidase, FMN-linked compare
ECD_02208 -0.9 -4.9 NADH:ubiquinone oxidoreductase, chain G compare
ECD_00502 -0.9 -1.7 DLP12 prophage; putative antitermination protein compare
ECD_03121 -0.9 -1.1 putative membrane protein compare
ECD_00682 -0.9 -2.6 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03846 -0.9 -5.9 oxidative and nitrosative stress transcriptional regulator compare
ECD_02826 -0.8 -1.1 hypothetical protein compare
ECD_01180 -0.8 -1.3 DUF2583 family putative inner membrane protein compare
ECD_03499 -0.8 -4.9 orotate phosphoribosyltransferase compare
ECD_02944 -0.8 -5.8 transcriptional repressor compare
ECD_01584 -0.8 -2.3 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01486 -0.8 -1.6 UPF0056 family inner membrane protein compare
ECD_02765 -0.8 -2.9 transketolase 1, thiamine triphosphate-binding compare
ECD_03785 -0.8 -2.1 putative enzyme IIA component of PTS compare
ECD_02207 -0.8 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_03240 -0.8 -6.2 cell division protein that binds to the septal ring compare
ECD_02743 -0.8 -3.9 5-formyltetrahydrofolate cyclo-ligase family protein compare
ECD_00667 -0.8 -1.3 DUF1722 family protein compare
ECD_00688 -0.8 -3.7 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_02488 -0.8 -4.0 chorismate mutase and prephenate dehydratase, P-protein compare
ECD_01492 -0.8 -2.9 cysteine and O-acetyl-L-serine efflux system compare
ECD_03219 -0.8 -2.7 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase compare
ECD_00978 -0.8 -2.5 hydrogenase 1 maturation protease compare
ECD_01582 -0.8 -1.3 mannose-6-phosphate isomerase compare
ECD_01160 -0.8 -3.0 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_03730 -0.8 -1.5 TatABCE protein translocation system subunit compare
ECD_03642 -0.8 -6.0 flhDC operon transcriptional repressor compare
ECD_03657 -0.7 -4.3 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_02600 -0.7 -4.9 adenosine 5'-phosphosulfate kinase compare
ECD_04107 -0.7 -1.8 trehalose-6-P hydrolase compare
ECD_01238 -0.7 -2.9 component I of anthranilate synthase compare
ECD_02057 -0.7 -1.6 putative membrane protein compare
ECD_02211 -0.7 -3.2 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_00450 -0.7 -1.2 conserved protein, rhs-like protein compare
ECD_03375 -0.7 -5.4 putative periplasmic M16 family chaperone compare
ECD_01258 -0.7 -1.5 orotidine-5'-phosphate decarboxylase compare
ECD_03643 -0.7 -4.3 UPF0438 family protein compare
ECD_03885 -0.7 -3.5 homoserine O-transsuccinylase compare
ECD_01826 -0.7 -1.7 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03260 -0.7 -3.8 ferrous iron transporter, protein A compare
ECD_01928 -0.7 -0.8 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_00574 -0.7 -3.6 alkyl hydroperoxide reductase, C22 subunit compare
ECD_00994 -0.7 -1.3 putative phosphatidylethanolamine synthesis regulator compare
ECD_01802 -0.7 -3.5 RNA chaperone, putative ProP translation regulator compare
ECD_01694 -0.7 -1.1 fructosamine kinase family protein compare
ECD_00555 -0.7 -2.1 ferrienterobactin ABC transporter ATPase compare
ECD_03318 -0.7 -5.5 zinc, cobalt and lead efflux system compare
ECD_01866 -0.7 -2.4 trehalose-6-phosphate phosphatase, biosynthetic compare
ECD_00592 -0.7 -1.5 phospholipid:lipid A palmitoyltransferase compare


Specific Phenotypes

For 1 genes in this experiment