Experiment set4IT042 for Variovorax sp. OAS795

Compare to:

Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

200 most important genes:

  gene name fitness t score description  
ABID97_RS22620 -7.7 -5.3 response regulator transcription factor compare
ABID97_RS17970 -7.0 -5.2 protein TolQ compare
ABID97_RS06575 -6.8 -4.7 trehalose-phosphatase compare
ABID97_RS22625 -6.6 -7.8 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23225 -6.5 -11.8 glutamate synthase-related protein compare
ABID97_RS17265 -6.4 -3.2 two-component system response regulator OmpR compare
ABID97_RS02420 -6.1 -10.1 protealysin inhibitor emfourin compare
ABID97_RS14095 -5.8 -5.7 PAS domain S-box protein compare
ABID97_RS24055 -5.8 -2.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS10705 -5.7 -4.4 H-NS histone family protein compare
ABID97_RS16535 -5.7 -3.9 arginine/lysine/ornithine decarboxylase compare
ABID97_RS20425 -5.7 -3.1 DUF2818 family protein compare
ABID97_RS16695 -5.6 -15.3 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS03125 -5.5 -10.0 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS00585 -5.4 -15.4 TlpA disulfide reductase family protein compare
ABID97_RS10800 -5.3 -6.6 alkyl hydroperoxide reductase subunit C compare
ABID97_RS17270 -5.2 -7.2 ATP-binding protein compare
ABID97_RS23775 -5.1 -8.3 ABC transporter permease compare
ABID97_RS23325 -5.0 -4.9 cytochrome c biogenesis protein ResB compare
ABID97_RS08425 -4.8 -3.3 tryptophan synthase subunit alpha compare
ABID97_RS05260 -4.8 -1.2 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS25085 -4.7 -3.3 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS23780 -4.7 -8.9 ABC transporter permease compare
ABID97_RS05445 -4.7 -1.6 ORF6N domain-containing protein compare
ABID97_RS17590 -4.7 -17.6 endopeptidase La compare
ABID97_RS05700 -4.6 -12.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS05250 -4.6 -3.2 anthranilate synthase component I compare
ABID97_RS23425 -4.5 -2.2 tRNA-Pro compare
ABID97_RS23915 -4.5 -4.3 heme o synthase compare
ABID97_RS23320 -4.4 -3.0 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS23920 -4.4 -9.8 COX15/CtaA family protein compare
ABID97_RS16910 -4.3 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS23330 -4.3 -8.4 c-type cytochrome compare
ABID97_RS05275 -4.3 -2.1 anthranilate phosphoribosyltransferase compare
ABID97_RS21385 -4.3 -4.6 phosphomannomutase/phosphoglucomutase compare
ABID97_RS04030 -4.3 -3.8 FAD-binding oxidoreductase compare
ABID97_RS10885 -4.2 -6.1 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS23220 -4.1 -1.4 glutamate synthase subunit beta compare
ABID97_RS16690 -4.1 -5.2 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS22975 -4.1 -8.6 cytochrome c1 compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS23015 -4.0 -10.3 glycosyltransferase family 4 protein compare
ABID97_RS14265 -4.0 -8.1 protease modulator HflC compare
ABID97_RS25340 -4.0 -3.9 apolipoprotein N-acyltransferase compare
ABID97_RS14260 -4.0 -8.6 FtsH protease activity modulator HflK compare
ABID97_RS12180 -3.9 -2.1 hypothetical protein compare
ABID97_RS08775 -3.9 -1.9 ribosome small subunit-dependent GTPase A compare
ABID97_RS14105 -3.8 -2.5 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS09180 -3.8 -5.9 DNA polymerase I compare
ABID97_RS03110 -3.8 -7.4 helix-turn-helix transcriptional regulator compare
ABID97_RS13990 -3.7 -3.6 amino acid aminotransferase compare
ABID97_RS02600 -3.7 -5.0 homoserine O-acetyltransferase compare
ABID97_RS07500 -3.7 -3.2 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS20020 -3.7 -1.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS02460 -3.7 -18.5 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS00525 -3.7 -11.4 DMT family transporter compare
ABID97_RS05855 -3.6 -13.3 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABID97_RS10675 -3.6 -2.5 SurA N-terminal domain-containing protein compare
ABID97_RS17050 -3.6 -1.8 RlmE family RNA methyltransferase compare
ABID97_RS24170 -3.6 -7.2 ATP-binding protein compare
ABID97_RS13860 -3.6 -6.7 hypothetical protein compare
ABID97_RS23455 -3.6 -2.5 hypothetical protein compare
ABID97_RS05370 -3.6 -2.5 ATP-binding protein compare
ABID97_RS23965 -3.5 -16.3 cytochrome c oxidase subunit II compare
ABID97_RS17595 -3.5 -9.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS16920 -3.4 -12.5 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS17360 -3.4 -1.4 alpha/beta hydrolase compare
ABID97_RS01855 -3.4 -0.8 preprotein translocase subunit YajC compare
ABID97_RS05750 -3.3 -2.3 glycosyltransferase compare
ABID97_RS05365 -3.3 -2.3 DUF4390 domain-containing protein compare
ABID97_RS16435 -3.3 -7.0 SsrA-binding protein SmpB compare
ABID97_RS03805 -3.3 -1.1 ATP-binding protein compare
ABID97_RS22985 -3.3 -2.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS23025 -3.3 -15.2 sugar transferase compare
ABID97_RS05705 -3.3 -18.7 GDP-mannose 4,6-dehydratase compare
ABID97_RS23450 -3.2 -2.2 MBOAT family protein compare
ABID97_RS05710 -3.2 -20.9 glycosyltransferase compare
ABID97_RS22980 -3.1 -14.5 cytochrome bc complex cytochrome b subunit compare
ABID97_RS16985 -3.1 -4.2 transcriptional repressor LexA compare
ABID97_RS14115 -3.1 -6.8 dihydrolipoyl dehydrogenase compare
ABID97_RS11640 -3.1 -6.1 TetR family transcriptional regulator compare
ABID97_RS06345 -3.0 -2.9 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS14100 -3.0 -11.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS17895 -3.0 -9.8 transcriptional regulator NrdR compare
ABID97_RS05725 -3.0 -13.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS03680 -3.0 -8.2 lysophospholipid transporter LplT compare
ABID97_RS07380 -2.9 -6.9 S41 family peptidase compare
ABID97_RS13950 -2.9 -9.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS06160 -2.9 -10.8 GTP-binding protein compare
ABID97_RS15665 -2.9 -10.8 [protein-PII] uridylyltransferase compare
ABID97_RS08435 -2.9 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS19495 -2.9 -4.3 glucan biosynthesis protein D compare
ABID97_RS05755 -2.8 -1.9 glycosyltransferase compare
ABID97_RS03800 -2.8 -1.9 O-antigen ligase family protein compare
ABID97_RS05740 -2.8 -1.9 glycosyltransferase family A protein compare
ABID97_RS04765 -2.8 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS17600 -2.8 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS14665 -2.8 -3.8 UvrD-helicase domain-containing protein compare
ABID97_RS04960 -2.8 -1.0 ATP-binding protein compare
ABID97_RS15100 -2.8 -2.3 helix-turn-helix transcriptional regulator compare
ABID97_RS21945 -2.8 -4.1 hemolysin family protein compare
ABID97_RS04480 -2.8 -1.9 magnesium/cobalt transporter CorA compare
ABID97_RS19555 -2.8 -1.3 response regulator transcription factor compare
ABID97_RS05730 -2.7 -9.5 glycosyltransferase family 2 protein compare
ABID97_RS00565 -2.7 -11.6 phosphoenolpyruvate--protein phosphotransferase compare
ABID97_RS23960 -2.7 -14.8 cytochrome c oxidase subunit I compare
ABID97_RS19540 -2.7 -8.0 phosphoethanolamine--lipid A transferase compare
ABID97_RS05765 -2.7 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS06275 -2.7 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS08710 -2.7 -9.0 polynucleotide adenylyltransferase PcnB compare
ABID97_RS21055 -2.7 -7.4 2OG-Fe dioxygenase family protein compare
ABID97_RS03115 -2.7 -4.2 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS03495 -2.6 -16.1 TetR family transcriptional regulator compare
ABID97_RS04035 -2.6 -6.0 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS06390 -2.6 -3.0 carbohydrate kinase family protein compare
ABID97_RS24390 -2.6 -11.3 c-type cytochrome compare
ABID97_RS08640 -2.6 -4.0 DUF3579 domain-containing protein compare
ABID97_RS03910 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABID97_RS06520 -2.5 -1.7 SAM-dependent methyltransferase compare
ABID97_RS25345 -2.4 -7.4 transporter associated domain-containing protein compare
ABID97_RS05670 -2.4 -1.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS20095 -2.4 -2.2 DNA topoisomerase IV subunit B compare
ABID97_RS19955 -2.4 -1.3 glycerol-3-phosphate dehydrogenase compare
ABID97_RS00880 -2.4 -8.1 AMP nucleosidase compare
ABID97_RS06365 -2.4 -1.3 TlpA disulfide reductase family protein compare
ABID97_RS25405 -2.4 -12.3 16S ribosomal RNA compare
ABID97_RS07775 -2.3 -3.9 phosphoribosylglycinamide formyltransferase compare
ABID97_RS27785 -2.3 -7.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS07000 -2.3 -10.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS04760 -2.3 -1.6 SPOR domain-containing protein compare
ABID97_RS28635 -2.3 -4.9 IclR family transcriptional regulator compare
ABID97_RS14090 -2.3 -0.8 response regulator transcription factor compare
ABID97_RS13945 -2.3 -5.8 acyl-CoA carboxylase subunit beta compare
ABID97_RS08480 -2.3 -1.6 citrate synthase compare
ABID97_RS23230 -2.3 -11.6 transposase compare
ABID97_RS23940 -2.3 -2.9 cytochrome c oxidase subunit 3 compare
ABID97_RS20705 -2.3 -6.3 molybdopterin adenylyltransferase compare
ABID97_RS19760 -2.3 -4.7 ROK family transcriptional regulator compare
ABID97_RS25525 -2.2 -3.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS22860 -2.2 -2.7 MurR/RpiR family transcriptional regulator compare
ABID97_RS23645 -2.2 -1.7 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS04500 -2.2 -1.2 HPr(Ser) kinase/phosphatase compare
ABID97_RS17850 -2.2 -0.7 tetratricopeptide repeat protein compare
ABID97_RS16785 -2.2 -1.5 transporter compare
ABID97_RS14160 -2.2 -7.0 cell division protein ZapE compare
ABID97_RS07355 -2.2 -8.2 CHASE3 domain-containing protein compare
ABID97_RS13450 -2.2 -2.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS22760 -2.2 -2.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS13980 -2.2 -0.7 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS23790 -2.2 -3.0 ATP-binding cassette domain-containing protein compare
ABID97_RS24370 -2.2 -2.6 DUF1841 family protein compare
ABID97_RS23065 -2.1 -6.5 trypsin-like peptidase domain-containing protein compare
ABID97_RS24500 -2.1 -7.0 oxalyl-CoA decarboxylase compare
ABID97_RS20520 -2.1 -0.9 polyribonucleotide nucleotidyltransferase compare
ABID97_RS25900 -2.1 -1.8 ABC transporter permease compare
ABID97_RS04505 -2.1 -1.8 ferric iron uptake transcriptional regulator compare
ABID97_RS23040 -2.1 -8.3 polysaccharide biosynthesis/export family protein compare
ABID97_RS02825 -2.1 -4.4 heavy metal translocating P-type ATPase compare
ABID97_RS08220 -2.0 -13.4 phosphoenolpyruvate carboxylase compare
ABID97_RS00315 -2.0 -8.5 TetR family transcriptional regulator compare
ABID97_RS23290 -2.0 -8.8 penicillin-binding protein 1A compare
ABID97_RS02100 -2.0 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
ABID97_RS03120 -2.0 -11.6 benzoyl-CoA 2,3-epoxidase subunit BoxB compare
ABID97_RS25245 -2.0 -8.1 lysophospholipid acyltransferase family protein compare
ABID97_RS10910 -2.0 -2.1 MoaD/ThiS family protein compare
ABID97_RS23800 -2.0 -6.8 ABC transporter substrate-binding protein compare
ABID97_RS07855 -2.0 -2.8 ABC transporter ATP-binding protein compare
ABID97_RS08440 -2.0 -6.9 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS23030 -2.0 -9.8 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS14755 -1.9 -8.3 'GTP 3',8-cyclase MoaA' pseudo=_no_value transl_table=11 compare
ABID97_RS01200 -1.9 -1.2 L-idonate 5-dehydrogenase compare
ABID97_RS06450 -1.9 -1.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS07920 -1.9 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABID97_RS14625 -1.9 -5.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS14985 -1.9 -1.0 hypothetical protein compare
ABID97_RS10920 -1.9 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS13155 -1.8 -2.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS09130 -1.8 -0.9 tRNA-Ala compare
ABID97_RS08330 -1.8 -9.5 RNA polymerase sigma factor RpoE compare
ABID97_RS24750 -1.8 -7.4 redox-regulated ATPase YchF compare
ABID97_RS24045 -1.8 -3.4 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS17635 -1.7 -4.1 presqualene diphosphate synthase HpnD compare
ABID97_RS03090 -1.7 -4.3 alpha/beta hydrolase compare
ABID97_RS19375 -1.7 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS04630 -1.7 -4.9 glutathione synthase compare
ABID97_RS24475 -1.7 -3.0 ADP-forming succinate--CoA ligase subunit beta compare
ABID97_RS05280 -1.7 -1.1 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS23950 -1.7 -8.6 cytochrome c oxidase assembly protein compare
ABID97_RS20965 -1.7 -7.2 glutamate--cysteine ligase compare
ABID97_RS13865 -1.7 -4.2 hypothetical protein compare
ABID97_RS10905 -1.7 -5.2 gephyrin-like molybdotransferase Glp compare
ABID97_RS01590 -1.7 -3.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABID97_RS04605 -1.7 -8.3 glutamate--cysteine ligase compare
ABID97_RS24920 -1.7 -1.0 Holliday junction branch migration protein RuvA compare
ABID97_RS21165 -1.7 -4.0 energy-dependent translational throttle protein EttA compare
ABID97_RS08390 -1.6 -6.6 beta-N-acetylhexosaminidase compare
ABID97_RS15525 -1.6 -3.2 serine O-acetyltransferase EpsC compare
ABID97_RS07610 -1.6 -0.9 response regulator transcription factor compare
ABID97_RS11545 -1.6 -0.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS06055 -1.6 -4.0 protease HtpX compare


Specific Phenotypes

For 14 genes in this experiment

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days in Variovorax sp. OAS795

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days across organisms