Experiment set4IT042 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium selenate 630 mM

200 most important genes:

  gene name fitness t score description  
Atu0912 -3.4 -1.7 Na+/H+ antiporter compare
Atu1685 -2.9 -1.5 hypothetical protein compare
Atu1446 -2.5 -3.8 two component response regulator compare
Atu0039 -2.2 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu4616 -2.1 -2.7 dTDP-4-dehydrorhamnose reductase compare
Atu3763 -2.0 -2.7 hypothetical protein compare
Atu1646 -1.9 -4.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1163 -1.9 -2.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0017 -1.8 -2.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3598 -1.6 -1.5 thiol:disulfide interchange protein compare
Atu4072 -1.6 -2.1 nodulation protein N compare
Atu1647 -1.5 -5.4 ABC transporter, membrane spanning protein compare
Atu1644 -1.5 -1.8 hypothetical protein compare
Atu1739 -1.5 -5.2 permease compare
Atu3353 -1.4 -6.8 mannose-1-phosphate guanylyltransferase compare
Atu0189 -1.4 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0400 -1.4 -2.5 orotate phosphoribosyltransferase compare
Atu1645 -1.4 -5.0 ABC transporter, substrate binding protein compare
Atu2125 -1.4 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2289 -1.3 -7.9 anthranilate synthase component I and II compare
Atu2800 -1.3 -1.8 precorrin-3B C17-methyltransferase compare
Atu2183 -1.3 -6.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4618 -1.3 -7.5 dTDP-rhamnose-3,5-epimerase compare
Atu4614 -1.3 -5.5 glycosyltransferase compare
Atu2439 -1.3 -1.1 hypothetical protein compare
Atu4617 -1.3 -5.2 dTDP-D-glucose-4,6-dehydratase compare
Atu1891 -1.3 -2.7 cobalamin biosynthesis protein compare
Atu4223 -1.2 -2.0 sarcosine oxidase delta subunit compare
Atu1149 -1.2 -1.1 adenylate cyclase compare
Atu2798 -1.2 -4.1 precorrin-6y methyltransferase compare
Atu2368 -1.2 -1.4 hypothetical protein compare
Atu2801 -1.2 -3.6 precorrin-2 C20 methyltransferase compare
Atu0966 -1.2 -1.9 hypothetical protein compare
Atu3311 -1.2 -7.6 phosphomannose isomerase compare
Atu1307 -1.1 -2.7 dihydroorotase compare
Atu1687 -1.1 -3.3 anthranilate phosphoribosyltransferase compare
Atu1688 -1.1 -3.1 indole-3-glycerol-phosphate synthase compare
Atu2710 -1.1 -5.4 hypothetical protein compare
Atu2787 -1.1 -1.0 hypothetical protein compare
Atu8190 -1.1 -5.2 hypothetical protein compare
Atu3429 -1.1 -1.3 hypothetical protein compare
Atu0298 -1.0 -4.2 orotidine 5 compare
Atu2163 -1.0 -1.1 hypothetical protein compare
Atu5430 -1.0 -1.0 hypothetical protein compare
Atu4610 -1.0 -5.5 sugar nucleotide epimerase/dehydratase compare
Atu1028 -1.0 -1.6 hypothetical protein compare
Atu2802 -1.0 -3.0 precorrin-8X methylmutase compare
Atu0784 -1.0 -3.5 hypothetical protein compare
Atu0486 -1.0 -3.2 dihydroorotate dehydrogenase compare
Atu1774 -0.9 -4.7 ABC transporter, substrate binding protein (peptide) compare
Atu4613 -0.9 -6.3 glycosyltransferase compare
Atu1581 -0.9 -1.6 hypothetical protein compare
Atu2207 -0.9 -2.7 two component sensor kinase compare
Atu1254 -0.9 -1.3 transcriptional regulator, ArsR family compare
Atu4608 -0.9 -5.3 hypothetical protein compare
Atu4677 -0.9 -0.8 hypothetical protein compare
Atu2797 -0.9 -2.0 cobalamin biosynthesis protein compare
Atu8082 -0.8 -1.6 hypothetical protein compare
Atu2379 -0.8 -4.1 phosphomannomutase compare
Atu2204 -0.8 -1.8 hypothetical protein compare
Atu1542 -0.8 -3.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0399 -0.8 -2.5 dihydroorotase compare
Atu4469 -0.8 -2.1 iron ABC transporter permease compare
Atu1468 -0.8 -4.0 hypothetical protein compare
Atu4615 -0.8 -3.6 glucose-1-phosphate thymidylyltransferase compare
Atu4609 -0.8 -5.4 glycosyltransferase compare
Atu2796 -0.8 -3.2 precorrin-4 C11-methyltransferase compare
Atu0368 -0.8 -3.3 tRNA pseudouridine synthase I compare
Atu3727 -0.8 -2.2 hypothetical protein compare
Atu0165 -0.8 -2.8 hypothetical protein compare
Atu2793 -0.8 -2.6 cobyrinic acid a,c-diamide synthase compare
Atu0361 -0.8 -1.7 transcriptional regulator compare
Atu1686 -0.8 -4.5 peptidyl-prolyl cis-trans isomerse D compare
Atu2803 -0.8 -2.2 Cobalamin biosynthesis associated protein compare
Atu0939 -0.8 -2.1 PemI protein compare
Atu0331 -0.8 -1.1 sigma-54 modulation protein compare
Atu3593 -0.8 -3.2 hypothetical protein compare
Atu2215 -0.8 -3.6 hypothetical protein compare
Atu0421 -0.8 -1.1 ABC transporter, membrane spanning protein compare
Atu1334 -0.8 -3.9 aspartate transaminase compare
Atu0972 -0.8 -2.2 lipA protein compare
Atu3160 -0.8 -1.5 hypothetical protein compare
Atu2200 -0.8 -1.5 cold shock protein compare
Atu3123 -0.7 -2.2 30S ribosomal protein S21 compare
Atu2073 -0.7 -2.1 membrane protein compare
Atu2810 -0.7 -4.5 cobalamin biosynthetic protein compare
Atu0190 -0.7 -3.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0883 -0.7 -1.6 hypothetical protein compare
Atu4144 -0.7 -0.9 hypothetical protein compare
Atu0026 -0.7 -0.7 hypothetical protein compare
Atu2335 -0.7 -1.5 hypothetical protein compare
Atu2067 -0.7 -0.8 hypothetical protein compare
Atu4671 -0.7 -2.1 response regulator compare
Atu4166 -0.7 -1.1 UDP-glucose 4-epimerase compare
Atu6195 -0.7 -2.3 conserved hypothetical protein compare
Atu2809 -0.7 -3.9 cobalamin biosynthesis protein compare
Atu4317 -0.7 -1.2 TetR family transcriptional regulator compare
Atu8194 -0.7 -2.2 hypothetical protein compare
Atu0040 -0.7 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3697 -0.7 -1.8 ATP-dependent protease LA 2 compare
Atu2712 -0.7 -2.5 ABC transporter, nucleotide binding/ATPase protein (thiamine) compare
Atu3031 -0.7 -1.0 hypothetical protein compare
Atu3712 -0.7 -0.9 hypothetical protein compare
Atu0422 -0.7 -0.9 ABC transporter, membrane spanning protein compare
Atu1874 -0.7 -1.1 RecA protein compare
Atu3733 -0.7 -1.6 hypothetical protein compare
Atu1904 -0.7 -1.0 transcriptional regulator compare
Atu0471 -0.7 -1.5 hypothetical protein compare
Atu0184 -0.7 -1.4 glucokinase compare
Atu1629 -0.6 -0.9 transcriptional regulator, ArsR family compare
Atu5169 -0.6 -2.5 type IV secretion protein AvhB8 compare
Atu0085 -0.6 -2.4 tRNA pseudouridine 55 synthase compare
Atu2805 -0.6 -2.6 cobalamin synthesis protein compare
Atu0025 -0.6 -0.9 hypothetical protein compare
Atu3496 -0.6 -1.3 hypothetical protein compare
Atu2045 -0.6 -3.7 HFLK protein compare
Atu1679 -0.6 -1.1 peptidyl prolyl cis-trans isomerase compare
Atu0503 -0.6 -4.0 enoyl-CoA hydratase compare
Atu0188 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4068 -0.6 -1.3 sarcosine oxidase delta subunit compare
Atu2378 -0.6 -1.3 hypothetical protein compare
Atu2192 -0.6 -0.9 hypothetical protein compare
Atu3443 -0.6 -1.7 hypothetical protein compare
Atu8025 -0.6 -0.9 hypothetical protein compare
Atu1634 -0.6 -0.7 hypothetical protein compare
Atu5470 -0.6 -1.3 hypothetical protein compare
Atu2146 -0.6 -1.7 hypothetical protein compare
Atu0043 -0.6 -1.2 imidazoleglycerol-phosphate dehydratase compare
Atu1845 -0.6 -1.8 phosphoribosylformylglycinamidine synthase I compare
Atu1076 -0.6 -1.8 colicin V production protein compare
Atu1241 -0.6 -1.4 hypothetical protein compare
Atu3044 -0.6 -1.9 asparaginase compare
Atu3120 -0.6 -0.7 hypothetical protein compare
Atu1260 -0.6 -1.0 hypothetical protein compare
Atu1466 -0.6 -1.0 hypothetical protein compare
Atu1173 -0.6 -3.0 MFS permease compare
Atu5007 -0.6 -3.1 santhopine-responsive transcriptional repressor compare
Atu2799 -0.6 -1.5 precorrin-6x reductase compare
Atu2239 -0.6 -1.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3579 -0.5 -1.9 lactoylglutathione lyase compare
Atu2808 -0.5 -2.2 cobyric acid synthase compare
Atu3336 -0.5 -1.8 hypothetical protein compare
Atu2605 -0.5 -1.5 hypothetical protein compare
Atu0319 -0.5 -0.7 ubiquinone biosynthesis protein compare
Atu1339 -0.5 -1.6 ribonuclease E compare
Atu0662 -0.5 -1.9 transcriptional regulator, GntR family compare
Atu0824 -0.5 -0.7 hypothetical protein compare
Atu5163 -0.5 -2.4 type IV secretion protein AvhB2 compare
Atu4643 -0.5 -1.6 hypothetical protein compare
Atu0538 -0.5 -1.5 hypothetical protein compare
Atu1470 -0.5 -0.4 Camphor resistance protein compare
Atu4385 -0.5 -1.8 hypothetical protein compare
Atu4857 -0.5 -2.5 mobilization protein C compare
Atu4536 -0.5 -2.2 amino acid ABC transporter permease compare
Atu0953 -0.5 -0.7 hypothetical protein compare
Atu3886 -0.5 -3.2 lysophospholipase compare
Atu1535 -0.5 -0.7 cytochrome c oxidase, FixQ chain compare
Atu2083 -0.5 -1.2 DNA repair protein RecN compare
Atu5075 -0.5 -3.0 GntR family transcriptional regulator compare
Atu0602 -0.5 -2.2 glutamine synthetase compare
Atu5155 -0.5 -1.8 MarR family transcriptional regulator compare
Atu1500 -0.5 -1.5 rare lipoprotein A compare
Atu3084 -0.5 -1.9 RNA polymerase sigma factor compare
Atu3667 -0.5 -1.5 aspartate alpha-decarboxylase compare
Atu5424 -0.5 -3.3 oxidoreductase compare
Atu0152 -0.5 -0.8 hypothetical protein compare
Atu8151 -0.5 -1.1 hypothetical protein compare
Atu2804 -0.5 -3.0 cobaltochelatase subunit compare
Atu2578 -0.5 -2.1 cAMP-dependent protein kinase regulatory subunit compare
Atu1851 -0.5 -1.3 BolA/YrbA family protein compare
Atu5443 -0.5 -3.0 TetR family transcriptional regulator compare
Atu2362 -0.5 -2.7 S-methyltransferase compare
Atu3063 -0.5 -2.0 ABC transporter permease compare
Atu5179 -0.5 -2.3 hypothetical protein compare
Atu0572 -0.5 -0.8 hypothetical protein compare
Atu1387 -0.5 -1.2 transcriptional regulator, GntR family compare
Atu1062 -0.5 -0.9 phosphatidylserine synthase compare
Atu3287 -0.5 -1.4 thiamine biosynthesis associated protein compare
Atu5504 -0.5 -1.4 hypothetical protein compare
Atu2831 -0.5 -1.4 glucose inhibited division protein A compare
Atu0513 -0.5 -2.2 hypothetical protein compare
Atu1308 -0.5 -1.3 aspartate carbamoyl transferase catalytic subunit compare
Atu0501 -0.5 -3.0 acyl-CoA dehydrogenase compare
Atu2713 -0.5 -3.0 ABC transporter, membrane spanning protein (thiamine) compare
Atu3227 -0.5 -2.0 AraC family transcriptional regulator compare
Atu3168 -0.5 -2.0 sorbitol/mannitol ABC transporter permease compare
Atu0225 -0.5 -0.5 hypothetical protein compare
Atu1189 -0.5 -1.8 hypothetical protein compare
Atu0272 -0.5 -1.8 transcriptional regulator, MarR family compare
Atu4462 -0.5 -2.1 transcriptional regulator compare
Atu1182 -0.5 -1.0 hypothetical protein compare
Atu0755 -0.5 -1.2 hypothetical protein compare
Atu2788 -0.5 -2.4 citrate lyase, beta subunit compare
Atu0102 -0.4 -2.2 exopolysaccharide production protein compare
Atu1872 -0.4 -2.0 hypothetical protein compare
Atu2169 -0.4 -1.6 hypothetical protein compare
Atu2238 -0.4 -1.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3911 -0.4 -2.1 hypothetical protein compare
Atu3048 -0.4 -2.0 oligopeptide ABC transporter permease compare
Atu0149 -0.4 -1.3 enoyl-(acyl-carrier-protein) reductase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Sodium selenate across organisms