Experiment set4IT041 for Variovorax sp. OAS795
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Group: in plantaMedia: + Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Culturing: Variovorax_OAS795_ML2, pot, at 26 (C), (Solid)
By: Marta on 3-Jun-21
Specific Phenotypes
For 11 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| adenosine nucleotides degradation III | 1 | 1 | 1 |
| L-cysteine biosynthesis I | 2 | 2 | 1 |
| oxalate degradation II | 3 | 2 | 1 |
| L-cysteine biosynthesis VII (from S-sulfo-L-cysteine) | 4 | 3 | 1 |
| N-3-oxalyl-L-2,3-diaminopropanoate biosynthesis | 4 | 1 | 1 |
| seleno-amino acid biosynthesis (plants) | 5 | 3 | 1 |
| D-cycloserine biosynthesis | 6 | 1 | 1 |
| benzoyl-CoA degradation I (aerobic) | 7 | 6 | 1 |
| L-cysteine biosynthesis VI (reverse transsulfuration) | 7 | 3 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of seleno-compound metabolism | 19 | 8 | 1 |