Experiment set4IT041 for Escherichia coli BW25113

LB with undecene 2.5 vol%

Group: stress
Media: LB + undecene (2.5 vol%)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Mitch on 3/15/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 12 genes in this experiment

For stress undecene in Escherichia coli BW25113

For stress undecene across organisms

SEED Subsystems

Subsystem	#Specific
Auxin degradation	1
Experimental tye	1
Heme and Siroheme Biosynthesis	1
KDO2-Lipid A biosynthesis	1
LOS core oligosaccharide biosynthesis	1
Orphan regulatory proteins	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Transport of Manganese	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Methane metabolism
• Pentose phosphate pathway
• Phenylalanine metabolism
• Tryptophan metabolism
• Lipopolysaccharide biosynthesis
• Nicotinate and nicotinamide metabolism
• Porphyrin and chlorophyll metabolism
• Phenylpropanoid biosynthesis
• Biosynthesis of phenylpropanoids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
betanidin degradation	1	1	1
superoxide radicals degradation	2	2	1
baicalein degradation (hydrogen peroxide detoxification)	2	1	1
methanol oxidation to formaldehyde IV	2	1	1
ethanol degradation IV	3	3	1
heme b biosynthesis I (aerobic)	4	4	1
reactive oxygen species degradation	4	4	1
heme b biosynthesis V (aerobic)	4	4	1
luteolin triglucuronide degradation	4	3	1
xanthommatin biosynthesis	4	1	1
CMP-3-deoxy-D-manno-octulosonate biosynthesis	5	5	1
superpathway of heme b biosynthesis from uroporphyrinogen-III	6	6	1
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis	7	4	1
superpathway of heme b biosynthesis from glycine	8	7	1
sesamin biosynthesis	8	1	1
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)	9	3	1
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)	9	3	1
superpathway of heme b biosynthesis from glutamate	10	10	1
lipid A-core biosynthesis (E. coli K-12)	10	9	1
lipid A-core biosynthesis (Salmonella)	10	8	1
justicidin B biosynthesis	10	1	1
matairesinol biosynthesis	10	1	1
superpathway of Kdo2-lipid A biosynthesis	25	24	2
superpathway of (Kdo)2-lipid A biosynthesis	17	17	1