| | gene | name | fitness | t score | description | |
|---|
| b0462 | acrB | -6.4 | -7.6 | multidrug efflux system protein (NCBI) | compare |
| b0463 | acrA | -6.1 | -8.4 | multidrug efflux system (NCBI) | compare |
| b3035 | tolC | -5.7 | -4.0 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2494 | yfgC | -5.4 | -9.0 | predicted peptidase (NCBI) | compare |
| b3961 | oxyR | -5.4 | -13.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3627 | rfaI | -5.4 | -14.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3199 | yrbK | -5.3 | -3.6 | hypothetical protein (NCBI) | compare |
| b3632 | rfaQ | -5.3 | -19.9 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3628 | rfaB | -5.2 | -16.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1129 | phoQ | -5.2 | -11.5 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b2392 | mntH | -5.2 | -8.6 | manganese transport protein MntH (NCBI) | compare |
| b3195 | yrbF | -5.1 | -12.4 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1130 | phoP | -5.1 | -10.3 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0431 | cyoB | -5.1 | -9.7 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b3631 | rfaG | -5.0 | -13.4 | glucosyltransferase I (NCBI) | compare |
| b3792 | wzxE | -5.0 | -6.9 | O-antigen translocase (NCBI) | compare |
| b3192 | yrbC | -5.0 | -11.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0427 | yajR | -4.9 | -11.0 | putative transport protein (VIMSS) | compare |
| b3193 | yrbD | -4.9 | -12.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0429 | cyoD | -4.9 | -6.6 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b0683 | fur | -4.9 | -3.3 | ferric uptake regulator (NCBI) | compare |
| b3194 | yrbE | -4.8 | -14.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0432 | cyoA | -4.7 | -12.2 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b3630 | rfaP | -4.7 | -7.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1604 | ydgH | -4.7 | -6.1 | hypothetical protein (NCBI) | compare |
| b1863 | ruvC | -4.6 | -4.4 | Holliday junction resolvase (NCBI) | compare |
| b2346 | vacJ | -4.5 | -10.5 | predicted lipoprotein (NCBI) | compare |
| b3026 | qseC | -4.5 | -4.4 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3842 | rfaH | -4.5 | -5.4 | transcriptional activator RfaH (NCBI) | compare |
| b1236 | galU | -4.5 | -4.4 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0428 | cyoE | -4.5 | -9.1 | protoheme IX farnesyltransferase (NCBI) | compare |
| b0430 | cyoC | -4.5 | -5.3 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b2016 | yeeZ | -4.5 | -9.9 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b0145 | dksA | -4.4 | -3.1 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4480 | hdfR | -4.4 | -7.9 | transcriptional regulator HdfR (NCBI) | compare |
| b2436 | hemF | -4.4 | -6.7 | coproporphyrinogen III oxidase (NCBI) | compare |
| b0222 | lpcA | -4.0 | -2.8 | phosphoheptose isomerase (NCBI) | compare |
| b2512 | yfgL | -3.9 | -8.6 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2699 | recA | -3.8 | -2.6 | recombinase A (NCBI) | compare |
| b3052 | rfaE | -3.8 | -5.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3728 | pstS | -3.8 | -5.8 | phosphate transporter subunit (NCBI) | compare |
| b3811 | xerC | -3.8 | -2.6 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1861 | ruvA | -3.7 | -3.6 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3764 | yifE | -3.7 | -7.5 | hypothetical protein (NCBI) | compare |
| b4172 | hfq | -3.7 | -3.6 | RNA-binding protein Hfq (NCBI) | compare |
| b0739 | tolA | -3.7 | -6.1 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3620 | rfaF | -3.7 | -2.5 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0053 | surA | -3.6 | -3.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3621 | rfaC | -3.6 | -2.5 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3619 | rfaD | -3.6 | -2.5 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0677 | nagA | -3.6 | -9.2 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b2784 | relA | -3.5 | -13.0 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b4000 | hupA | -3.4 | -6.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0738 | tolR | -3.4 | -3.3 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0200 | gmhB | -3.4 | -2.3 | hypothetical protein (NCBI) | compare |
| b3191 | yrbB | -3.3 | -12.8 | orf, hypothetical protein (VIMSS) | compare |
| b3198 | kdsC | -3.3 | -5.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2498 | upp | -3.3 | -5.3 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b3625 | rfaY | -3.2 | -16.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1839 | yebY | -3.2 | -5.6 | hypothetical protein (NCBI) | compare |
| b3725 | pstB | -3.2 | -3.1 | phosphate transporter subunit (NCBI) | compare |
| b2567 | rnc | -3.2 | -3.0 | ribonuclease III (NCBI) | compare |
| b0737 | tolQ | -3.1 | -4.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1677 | lpp | -3.1 | -5.1 | murein lipoprotein (NCBI) | compare |
| b2894 | xerD | -3.1 | -3.0 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0890 | ftsK | -3.1 | -10.4 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b3398 | yrfF | -3.0 | -5.0 | predicted inner membrane protein (NCBI) | compare |
| b0688 | pgm | -3.0 | -5.7 | phosphoglucomutase (NCBI) | compare |
| b2830 | nudH | -3.0 | -2.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b4025 | pgi | -2.9 | -12.2 | glucose-6-phosphate isomerase (NCBI) | compare |
| b1860 | ruvB | -2.9 | -1.9 | Holliday junction DNA helicase B (NCBI) | compare |
| b2906 | visC | -2.8 | -8.9 | hypothetical protein (NCBI) | compare |
| b0605 | ahpC | -2.7 | -7.3 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3226 | yhcK | -2.7 | -8.8 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b2820 | recB | -2.7 | -3.6 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b0957 | ompA | -2.7 | -4.8 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b2188 | yejM | -2.6 | -10.7 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2808 | gcvA | -2.6 | -8.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4585 | sroB | -2.6 | -2.1 | Novel sRNA, function unknown (RefSeq) | compare |
| b3839 | tatC | -2.5 | -11.7 | TatABCE protein translocation system subunit (NCBI) | compare |
| b4443 | gcvB | -2.5 | -1.7 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4146 | yjeK | -2.5 | -6.1 | predicted lysine aminomutase (NCBI) | compare |
| b3844 | fre | -2.5 | -8.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b3726 | pstA | -2.5 | -7.4 | phosphate transporter subunit (NCBI) | compare |
| b4441 | glmY | -2.5 | -2.4 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b0740 | tolB | -2.5 | -7.8 | translocation protein TolB precursor (NCBI) | compare |
| b2286 | nuoC | -2.5 | -7.6 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3341 | rpsG | -2.4 | -2.3 | 30S ribosomal protein S7 (NCBI) | compare |
| b0082 | mraW | -2.4 | -5.1 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0759 | galE | -2.4 | -8.0 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b3778 | rep | -2.4 | -12.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1831 | proQ | -2.3 | -5.9 | putative solute/DNA competence effector (NCBI) | compare |
| b2897 | ygfY | -2.3 | -4.9 | hypothetical protein (NCBI) | compare |
| b4177 | purA | -2.3 | -5.9 | adenylosuccinate synthetase (NCBI) | compare |
| b2620 | smpB | -2.3 | -3.8 | SsrA-binding protein (NCBI) | compare |
| b0471 | ybaB | -2.2 | -4.2 | hypothetical protein (NCBI) | compare |
| b0676 | nagC | -2.1 | -10.6 | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) | compare |
| b0440 | hupB | -2.1 | -5.1 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1830 | prc | -2.1 | -7.9 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b2276 | nuoN | -2.1 | -8.4 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2281 | nuoI | -2.1 | -4.4 | NADH dehydrogenase subunit I (NCBI) | compare |
| b1286 | rnb | -2.1 | -4.7 | exoribonuclease II (NCBI) | compare |
| b2284 | nuoF | -2.1 | -6.4 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2280 | nuoJ | -2.1 | -6.5 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2330 | yfcB | -2.0 | -3.9 | putative adenine-specific methylase (VIMSS) | compare |
| b3386 | rpe | -2.0 | -1.4 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b3169 | nusA | -2.0 | -4.3 | transcription elongation factor NusA (NCBI) | compare |
| b2277 | nuoM | -2.0 | -8.3 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3727 | pstC | -2.0 | -8.4 | phosphate transporter subunit (NCBI) | compare |
| b2283 | nuoG | -1.9 | -9.0 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b3197 | kdsD | -1.9 | -8.5 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b1712 | ihfA | -1.9 | -4.3 | integration host factor subunit alpha (NCBI) | compare |
| b2424 | cysU | -1.9 | -3.8 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b2822 | recC | -1.9 | -7.1 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b3237 | argR | -1.9 | -7.1 | arginine repressor (NCBI) | compare |
| b3387 | dam | -1.9 | -13.2 | DNA adenine methylase (NCBI) | compare |
| b1531 | marA | -1.8 | -4.0 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b0721 | sdhC | -1.8 | -6.4 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b4557 | yidD | -1.8 | -4.8 | hypothetical protein (NCBI) | compare |
| b0723 | sdhA | -1.8 | -10.9 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b0049 | apaH | -1.8 | -6.6 | diadenosinetetraphosphatase (NCBI) | compare |
| b3636 | rpmG | -1.7 | -3.0 | 50S ribosomal protein L33 (NCBI) | compare |
| b2287 | nuoB | -1.7 | -5.2 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1594 | dgsA | -1.7 | -6.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4042 | dgkA | -1.7 | -4.7 | diacylglycerol kinase (NCBI) | compare |
| b0406 | tgt | -1.7 | -7.4 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b3210 | arcB | -1.7 | -8.5 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b2278 | nuoL | -1.7 | -10.2 | NADH dehydrogenase subunit L (NCBI) | compare |
| b4698 | mgrR | -1.7 | -2.7 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b3242 | yhcR | -1.7 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b1855 | lpxM | -1.7 | -5.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0741 | pal | -1.7 | -4.4 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0724 | sdhB | -1.6 | -7.0 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b2617 | smpA | -1.6 | -3.5 | small membrane protein A (VIMSS) | compare |
| b4396 | rob | -1.6 | -8.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b3150 | yraP | -1.6 | -6.4 | hypothetical protein (NCBI) | compare |
| b2282 | nuoH | -1.6 | -4.0 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3075 | ebgR | -1.6 | -6.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4416 | rybA | -1.6 | -1.6 | unknown RNA (NCBI) | compare |
| b2279 | nuoK | -1.5 | -2.9 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2501 | ppk | -1.5 | -9.2 | polyphosphate kinase (NCBI) | compare |
| b4155 | yjeA | -1.5 | -2.0 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b0726 | sucA | -1.5 | -4.6 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b1658 | purR | -1.5 | -7.1 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0226 | dinJ | -1.5 | -2.0 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0623 | cspE | -1.5 | -2.0 | cold shock protein E (NCBI) | compare |
| b2288 | nuoA | -1.5 | -3.6 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0729 | sucD | -1.5 | -3.1 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2554 | yfhA | -1.5 | -7.9 | predicted DNA-binding response regulator in two-component system (NCBI) | compare |
| b3609 | secB | -1.5 | -1.6 | export protein SecB (NCBI) | compare |
| b4139 | aspA | -1.5 | -9.1 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b0014 | dnaK | -1.5 | -2.5 | molecular chaperone DnaK (NCBI) | compare |
| b0728 | sucC | -1.4 | -6.3 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b4402 | yjjY | -1.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b4509 | ylcG | -1.4 | -1.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b3042 | b3042 | -1.4 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2528 | iscA | -1.4 | -2.5 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b1840 | yebZ | -1.4 | -5.4 | predicted inner membrane protein (NCBI) | compare |
| b4191 | ulaR | -1.4 | -5.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1162 | ycgE | -1.4 | -5.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3261 | fis | -1.4 | -3.3 | DNA-binding protein Fis (NCBI) | compare |
| b2937 | speB | -1.4 | -6.7 | agmatinase (NCBI) | compare |
| b1693 | aroD | -1.4 | -7.3 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b0812 | dps | -1.3 | -6.3 | DNA protection during starvation conditions (NCBI) | compare |
| b4515 | ybgT | -1.3 | -2.0 | hypothetical protein (NCBI) | compare |
| b3281 | aroE | -1.3 | -9.2 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b3032 | cpdA | -1.3 | -6.2 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b3755 | yieP | -1.3 | -5.8 | predicted transcriptional regulator (NCBI) | compare |
| b2285 | nuoE | -1.3 | -1.9 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0209 | yafD | -1.3 | -4.9 | hypothetical protein (NCBI) | compare |
| b0149 | mrcB | -1.2 | -9.4 | penicillin-binding protein 1b (NCBI) | compare |
| b3926 | glpK | -1.2 | -10.0 | glycerol kinase (NCBI) | compare |
| b3935 | priA | -1.2 | -2.6 | primosome assembly protein PriA (NCBI) | compare |
| b3644 | yicC | -1.2 | -5.8 | hypothetical protein (NCBI) | compare |
| b0722 | sdhD | -1.2 | -3.8 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b3870 | glnA | -1.2 | -3.4 | glutamine synthetase (NCBI) | compare |
| b2064 | asmA | -1.2 | -5.0 | predicted assembly protein (NCBI) | compare |
| b3463 | ftsE | -1.2 | -4.1 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3963 | fabR | -1.2 | -7.2 | DNA-binding transcriptional repressor (RefSeq) | compare |
| b2555 | yfhG | -1.2 | -5.9 | hypothetical protein (NCBI) | compare |
| b4505 | insX | -1.2 | -1.8 | predicted IS protein (RefSeq) | compare |
| b1105 | ycfM | -1.2 | -3.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3784 | rfe | -1.2 | -8.2 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1841 | yobA | -1.2 | -1.8 | hypothetical protein (NCBI) | compare |
| b2313 | cvpA | -1.2 | -3.6 | membrane protein required for colicin V production (NCBI) | compare |
| b1235 | rssB | -1.2 | -6.7 | response regulator of RpoS (NCBI) | compare |
| b3613 | yibP | -1.1 | -5.3 | putative membrane protein (VIMSS) | compare |
| b0472 | recR | -1.1 | -5.7 | recombination protein RecR (NCBI) | compare |
| b3652 | recG | -1.1 | -7.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b0780 | ybhK | -1.1 | -4.9 | predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b0547 | ybcN | -1.1 | -2.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b3860 | dsbA | -1.1 | -5.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0548 | ninE | -1.0 | -1.8 | DLP12 prophage; conserved protein (NCBI) | compare |
| b2892 | recJ | -1.0 | -6.2 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | compare |
| b4239 | treC | -1.0 | -4.9 | trehalose-6-P hydrolase (NCBI) | compare |
| b3389 | aroB | -1.0 | -5.9 | 3-dehydroquinate synthase (NCBI) | compare |
| b1642 | slyA | -1.0 | -1.7 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2614 | grpE | -1.0 | -2.3 | heat shock protein (NCBI) | compare |
| b2168 | fruK | -1.0 | -2.2 | 1-phosphofructokinase (NCBI) | compare |
| b3700 | recF | -1.0 | -6.8 | recombination protein F (NCBI) | compare |