Experiment set4IT040 for Escherichia coli BW25113

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LB with undecene 5 vol%

Group: stress
Media: LB + undecene (5 vol%)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Mitch on 3/15/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 22 genes in this experiment

For stress undecene in Escherichia coli BW25113

For stress undecene across organisms

SEED Subsystems

Subsystem #Specific
Oxidative stress 2
Auxin degradation 1
Copper homeostasis 1
Experimental tye 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1
Heme and Siroheme Biosynthesis 1
KDO2-Lipid A biosynthesis 1
LOS core oligosaccharide biosynthesis 1
Lactose utilization 1
Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes 1
Orphan regulatory proteins 1
Photorespiration (oxidative C2 cycle) 1
Rhamnose containing glycans 1
Transcription initiation, bacterial sigma factors 1
Transport of Manganese 1
dTDP-rhamnose synthesis 1
linker unit-arabinogalactan synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
betanidin degradation 1 1 1
superoxide radicals degradation 2 2 1
baicalein degradation (hydrogen peroxide detoxification) 2 1 1
methanol oxidation to formaldehyde IV 2 1 1
ethanol degradation IV 3 3 1
dTDP-N-acetylthomosamine biosynthesis 4 4 1
heme b biosynthesis I (aerobic) 4 4 1
reactive oxygen species degradation 4 4 1
heme b biosynthesis V (aerobic) 4 4 1
luteolin triglucuronide degradation 4 3 1
dTDP-N-acetylviosamine biosynthesis 4 2 1
dTDP-β-D-fucofuranose biosynthesis 4 2 1
dTDP-6-deoxy-α-D-allose biosynthesis 4 2 1
xanthommatin biosynthesis 4 1 1
CMP-3-deoxy-D-manno-octulosonate biosynthesis 5 5 1
dTDP-β-L-rhamnose biosynthesis 5 5 1
dTDP-4-O-demethyl-β-L-noviose biosynthesis 5 3 1
dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis 5 2 1
dTDP-α-D-mycaminose biosynthesis 5 2 1
dTDP-3-acetamido-α-D-fucose biosynthesis 5 2 1
superpathway of heme b biosynthesis from uroporphyrinogen-III 6 6 1
dTDP-sibirosamine biosynthesis 6 3 1
dTDP-L-daunosamine biosynthesis 6 3 1
dTDP-D-desosamine biosynthesis 6 2 1
dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis 6 2 1
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis 7 4 1
dTDP-β-L-olivose biosynthesis 7 3 1
dTDP-β-L-digitoxose biosynthesis 7 3 1
dTDP-β-L-mycarose biosynthesis 7 2 1
superpathway of heme b biosynthesis from glycine 8 7 1
dTDP-β-L-megosamine biosynthesis 8 3 1
dTDP-β-L-4-epi-vancosamine biosynthesis 8 3 1
sesamin biosynthesis 8 1 1
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent) 9 3 1
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) 9 3 1
dTDP-α-D-forosamine biosynthesis 9 3 1
dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis 9 3 1
superpathway of heme b biosynthesis from glutamate 10 10 1
lipid A-core biosynthesis (E. coli K-12) 10 9 1
superpathway of enterobacterial common antigen biosynthesis 10 9 1
lipid A-core biosynthesis (Salmonella) 10 8 1
matairesinol biosynthesis 10 1 1
justicidin B biosynthesis 10 1 1
O-antigen building blocks biosynthesis (E. coli) 11 11 1
superpathway of Kdo2-lipid A biosynthesis 25 24 2
superpathway of (Kdo)2-lipid A biosynthesis 17 17 1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis 19 7 1
superpathway of novobiocin biosynthesis 19 4 1
superpathway of erythromycin biosynthesis 19 2 1
superpathway of megalomicin A biosynthesis 22 3 1
superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis 23 3 1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis 33 14 1