Experiment set4IT033 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

D-Trehalose dihydrate 20mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_0825 +2.5 2.9 Holliday junction DNA helicase, RuvB subunit compare
Echvi_4080 +1.8 2.0 hypothetical protein compare
Echvi_3068 +1.7 2.8 hypothetical protein compare
Echvi_4561 +1.6 2.1 hypothetical protein compare
Echvi_4081 +1.6 4.4 Malic enzyme compare
Echvi_0718 +1.4 1.8 segregation and condensation protein B compare
Echvi_0090 +1.3 1.4 Iron-sulfur cluster assembly accessory protein compare
Echvi_3283 +1.2 2.4 Lactoylglutathione lyase and related lyases compare
Echvi_3715 +1.1 1.9 Predicted Na+-dependent transporter compare
Echvi_3872 +1.0 1.1 SnoaL-like polyketide cyclase. compare
Echvi_2586 +1.0 1.1 hypothetical protein compare
Echvi_0440 +1.0 1.7 DNA repair proteins compare
Echvi_0897 +1.0 1.5 hypothetical protein compare
Echvi_1227 +1.0 1.0 hypothetical protein compare
Echvi_0275 +1.0 1.9 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Echvi_1356 +0.9 1.7 hypothetical protein compare
Echvi_1250 +0.9 2.6 hypothetical protein compare
Echvi_0089 +0.9 2.4 methylmalonyl-CoA epimerase compare
Echvi_2606 +0.9 1.2 hypothetical protein compare
Echvi_4047 +0.9 2.4 hypothetical protein compare
Echvi_4124 +0.9 1.8 Copper chaperone compare
Echvi_2198 +0.9 1.5 hypothetical protein compare
Echvi_3241 +0.9 1.7 hypothetical protein compare
Echvi_3648 +0.8 2.2 hypothetical protein compare
Echvi_3292 +0.8 1.0 hypothetical protein compare
Echvi_2428 +0.8 1.2 iojap-like ribosome-associated protein compare
Echvi_4161 +0.8 1.1 hypothetical protein compare
Echvi_4334 +0.8 1.3 hypothetical protein compare
Echvi_1184 +0.8 2.0 hypothetical protein compare
Echvi_2947 +0.8 2.6 hypothetical protein compare
Echvi_3914 +0.8 7.0 Transcriptional regulators compare
Echvi_3220 +0.8 1.8 hypothetical protein compare
Echvi_2135 +0.8 1.2 6-pyruvoyl-tetrahydropterin synthase compare
Echvi_3594 +0.8 2.0 hypothetical protein compare
Echvi_3142 +0.8 1.7 hypothetical protein compare
Echvi_0368 +0.8 1.3 hypothetical protein compare
Echvi_3451 +0.8 1.1 hypothetical protein compare
Echvi_0104 +0.8 1.2 Iron-sulfur cluster assembly accessory protein compare
Echvi_2232 +0.8 2.4 Uncharacterized small membrane protein compare
Echvi_4674 +0.8 1.3 Nucleotidyltransferase substrate binding protein like. compare
Echvi_4104 +0.7 0.9 hypothetical protein compare
Echvi_0046 +0.7 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_0781 +0.7 5.1 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Echvi_1456 +0.7 2.6 chromate transporter, chromate ion transporter (CHR) family compare
Echvi_4631 +0.7 4.6 (p)ppGpp synthetase, RelA/SpoT family compare
Echvi_4375 +0.7 1.0 hypothetical protein compare
Echvi_3126 +0.7 3.5 Fe2+-dicitrate sensor, membrane component compare
Echvi_1689 +0.7 1.2 hypothetical protein compare
Echvi_1119 +0.7 1.2 hypothetical protein compare
Echvi_0475 +0.7 1.7 Uncharacterized protein conserved in bacteria compare
Echvi_1822 +0.7 1.0 ubiquinone/menaquinone biosynthesis methyltransferases compare
Echvi_3708 +0.7 1.4 anti-anti-sigma factor compare
Echvi_1812 +0.7 1.1 membrane protein, MarC family compare
Echvi_1201 +0.7 1.9 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_4546 +0.7 2.2 hypothetical protein compare
Echvi_1603 +0.7 1.4 hypothetical protein compare
Echvi_2640 +0.7 1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Echvi_2908 +0.7 2.5 succinyl-CoA synthetase, beta subunit compare
Echvi_4237 +0.7 1.8 Predicted glycosyltransferases compare
Echvi_4232 +0.7 3.0 Glycosyltransferase compare
Echvi_2377 +0.7 2.1 hypothetical protein compare
Echvi_0764 +0.6 3.4 Small-conductance mechanosensitive channel compare
Echvi_3800 +0.6 1.1 hypothetical protein compare
Echvi_0197 +0.6 1.6 hypothetical protein compare
Echvi_3246 +0.6 1.0 hypothetical protein compare
Echvi_4048 +0.6 0.9 hypothetical protein compare
Echvi_0655 +0.6 3.9 hypothetical protein compare
Echvi_1930 +0.6 0.9 DNA repair proteins compare
Echvi_0614 +0.6 2.7 hypothetical protein compare
Echvi_3216 +0.6 2.7 YceI-like domain. compare
Echvi_3444 +0.6 0.9 tRNA compare
Echvi_0946 +0.6 1.8 hypothetical protein compare
Echvi_1220 +0.6 2.8 Tetratricopeptide repeat. compare
Echvi_1020 +0.6 0.9 hypothetical protein compare
Echvi_3938 +0.6 1.4 hypothetical protein compare
Echvi_2953 +0.6 1.2 Uncharacterized conserved protein compare
Echvi_1547 +0.6 1.8 hypothetical protein compare
Echvi_2306 +0.6 2.2 large conductance mechanosensitive channel protein compare
Echvi_3075 +0.6 1.0 hypothetical protein compare
Echvi_3604 +0.6 3.0 DNA repair photolyase compare
Echvi_0293 +0.6 1.7 hypothetical protein compare
Echvi_0692 +0.6 1.7 hypothetical protein compare
Echvi_3162 +0.6 3.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_4188 +0.6 2.2 hypothetical protein compare
Echvi_2168 +0.6 2.2 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_4527 +0.6 1.9 Plasmid stabilization system protein compare
Echvi_3296 +0.6 1.9 Deoxyhypusine synthase compare
Echvi_0678 +0.6 2.1 hypothetical protein compare
Echvi_4420 +0.6 2.2 hypothetical protein compare
Echvi_4024 +0.6 2.2 hypothetical protein compare
Echvi_0105 +0.6 2.5 hypothetical protein compare
Echvi_1713 +0.6 2.5 Cation/multidrug efflux pump compare
Echvi_3120 +0.6 1.7 hypothetical protein compare
Echvi_0721 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Echvi_0324 +0.5 2.4 Uncharacterized protein involved in methicillin resistance compare
Echvi_1359 +0.5 2.2 hypothetical protein compare
Echvi_3910 +0.5 3.1 Transcriptional regulator/sugar kinase compare
Echvi_3670 +0.5 0.8 hypothetical protein compare
Echvi_1519 +0.5 3.2 Na+/H+-dicarboxylate symporters compare
Echvi_1910 +0.5 1.5 hypothetical protein compare
Echvi_4319 +0.5 2.2 hypothetical protein compare
Echvi_2959 +0.5 1.1 hypothetical protein compare
Echvi_2212 +0.5 2.1 hypothetical protein compare
Echvi_0481 +0.5 2.5 NAD-dependent aldehyde dehydrogenases compare
Echvi_4083 +0.5 4.9 hypothetical protein compare
Echvi_0782 +0.5 3.3 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Echvi_1798 +0.5 2.5 Uridine phosphorylase compare
Echvi_0380 +0.5 2.4 hypothetical protein compare
Echvi_1772 +0.5 2.3 hypothetical protein compare
Echvi_1389 +0.5 2.6 hypothetical protein compare
Echvi_3358 +0.5 0.9 hypothetical protein compare
Echvi_0169 +0.5 3.8 hypothetical protein compare
Echvi_0854 +0.5 1.4 hypothetical protein compare
Echvi_4506 +0.5 2.1 Gluconolactonase compare
Echvi_3401 +0.5 1.7 hypothetical protein compare
Echvi_0586 +0.5 1.4 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Echvi_2401 +0.5 0.8 hypothetical protein compare
Echvi_0551 +0.5 2.0 hypothetical protein compare
Echvi_1254 +0.5 1.0 hypothetical protein compare
Echvi_1357 +0.5 2.1 Bacteroides conjugative transposon TraK protein compare
Echvi_4022 +0.5 1.1 hypothetical protein compare
Echvi_2125 +0.5 1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_3070 +0.5 1.4 hypothetical protein compare
Echvi_2193 +0.5 3.2 Transcriptional regulators compare
Echvi_2202 +0.5 2.3 branched-chain amino acid aminotransferase, group II compare
Echvi_4453 +0.5 0.4 hypothetical protein compare
Echvi_0652 +0.5 2.8 Outer membrane protein compare
Echvi_4547 +0.5 2.1 hypothetical protein compare
Echvi_3074 +0.5 1.3 hypothetical protein compare
Echvi_3223 +0.5 1.0 Mn-dependent transcriptional regulator compare
Echvi_2330 +0.5 1.3 hypothetical protein compare
Echvi_0776 +0.5 3.0 Sterol desaturase compare
Echvi_1725 +0.5 1.4 hypothetical protein compare
Echvi_1734 +0.5 1.5 Cystathionine beta-lyases/cystathionine gamma-synthases compare
Echvi_0641 +0.4 0.2 Transposase and inactivated derivatives compare
Echvi_1893 +0.4 1.8 molybdenum cofactor biosynthesis protein MoaC compare
Echvi_0047 +0.4 1.5 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_4209 +0.4 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_2122 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
Echvi_4308 +0.4 0.9 hypothetical protein compare
Echvi_2130 +0.4 1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Echvi_1287 +0.4 1.9 L-fucose isomerase and related proteins compare
Echvi_2513 +0.4 1.7 Phenylalanine-4-hydroxylase compare
Echvi_4242 +0.4 0.7 DNA repair proteins compare
Echvi_2995 +0.4 1.6 hypothetical protein compare
Echvi_0161 +0.4 1.5 Exopolyphosphatase compare
Echvi_3377 +0.4 0.9 Uncharacterized protein conserved in bacteria compare
Echvi_0201 +0.4 2.2 alanine dehydrogenase compare
Echvi_1821 +0.4 3.1 hypothetical protein compare
Echvi_3381 +0.4 3.8 Pregnancy-associated plasma protein-A. compare
Echvi_0840 +0.4 1.4 hypothetical protein compare
Echvi_0945 +0.4 1.3 hypothetical protein compare
Echvi_3430 +0.4 0.5 hypothetical protein compare
Echvi_0108 +0.4 1.0 DivIVA domain compare
Echvi_2582 +0.4 1.9 hypothetical protein compare
Echvi_0674 +0.4 3.5 hypothetical protein compare
Echvi_0507 +0.4 1.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Echvi_3770 +0.4 1.0 2-keto-3-deoxy-6-phosphogluconate aldolase compare
Echvi_4099 +0.4 1.0 hypothetical protein compare
Echvi_4021 +0.4 1.8 Cytochrome c peroxidase compare
Echvi_4003 +0.4 1.7 hypothetical protein compare
Echvi_0300 +0.4 2.8 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_3954 +0.4 1.7 exodeoxyribonuclease VII, large subunit compare
Echvi_3172 +0.4 1.6 hypothetical protein compare
Echvi_3745 +0.4 1.8 hypothetical protein compare
Echvi_2997 +0.4 2.6 Exopolyphosphatase compare
Echvi_1205 +0.4 2.8 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Echvi_0757 +0.4 0.7 hypothetical protein compare
Echvi_2800 +0.4 1.2 hypothetical protein compare
Echvi_0761 +0.4 0.7 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family compare
Echvi_1451 +0.4 1.3 Predicted membrane protein compare
Echvi_2359 +0.4 0.7 hypothetical protein compare
Echvi_3924 +0.4 2.2 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0456 +0.4 1.3 hypothetical protein compare
Echvi_2603 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
Echvi_0148 +0.4 1.7 transcriptional regulator, Spx/MgsR family compare
Echvi_4582 +0.4 0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_3952 +0.4 1.3 NAD-dependent aldehyde dehydrogenases compare
Echvi_2266 +0.4 3.1 Alanine dehydrogenase compare
Echvi_3922 +0.4 0.9 hypothetical protein compare
Echvi_0291 +0.4 0.5 hypothetical protein compare
Echvi_4606 +0.4 1.1 Protein of unknown function (DUF2721). compare
Echvi_1492 +0.4 1.2 hypothetical protein compare
Echvi_1353 +0.4 1.4 hypothetical protein compare
Echvi_0043 +0.4 2.0 ABC-type antimicrobial peptide transport system, permease component compare
Echvi_0154 +0.4 1.6 Predicted metal-dependent hydrolase of the TIM-barrel fold compare
Echvi_4536 +0.4 2.2 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Echvi_3853 +0.4 0.4 Predicted transcriptional regulators compare
Echvi_3923 +0.4 2.7 Fe2+-dicitrate sensor, membrane component compare
Echvi_2370 +0.4 2.0 hypothetical protein compare
Echvi_3981 +0.4 1.9 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_2943 +0.4 1.1 Protein chain release factor B compare
Echvi_2409 +0.4 1.7 Acetyltransferases compare
Echvi_2788 +0.4 1.2 hypothetical protein compare
Echvi_4677 +0.4 1.5 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Echvi_0302 +0.4 1.9 amidohydrolase compare
Echvi_4544 +0.4 1.6 Microcystin-dependent protein compare
Echvi_4586 +0.4 1.5 von Willebrand factor type A domain. compare
Echvi_4622 +0.4 2.0 hypothetical protein compare
Echvi_0915 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in carbon source experiments

For carbon source D-Trehalose dihydrate across organisms