Experiment set4IT033 for Agrobacterium fabrum C58

Compare to:

R2A with sodium iodate 30 mM

200 most important genes:

  gene name fitness t score description  
Atu1030 -4.2 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1307 -3.5 -5.0 dihydroorotase compare
Atu0434 -3.3 -4.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0017 -3.0 -2.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0039 -2.9 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -2.8 -5.8 orotate phosphoribosyltransferase compare
Atu0399 -2.7 -7.3 dihydroorotase compare
Atu1308 -2.6 -7.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1687 -2.4 -7.0 anthranilate phosphoribosyltransferase compare
Atu1446 -2.4 -3.0 two component response regulator compare
Atu1688 -2.3 -3.5 indole-3-glycerol-phosphate synthase compare
Atu3469 -2.3 -2.3 phosphoglyceromutase compare
Atu0298 -2.2 -6.9 orotidine 5 compare
Atu0184 -2.0 -2.4 glucokinase compare
Atu2289 -2.0 -9.8 anthranilate synthase component I and II compare
Atu4773 -1.8 -2.1 two component response regulator compare
Atu0486 -1.8 -5.2 dihydroorotate dehydrogenase compare
Atu3001 -1.8 -4.0 hypothetical protein compare
Atu2710 -1.7 -6.6 hypothetical protein compare
Atu1163 -1.6 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1028 -1.6 -2.6 hypothetical protein compare
Atu1891 -1.5 -3.3 cobalamin biosynthesis protein compare
Atu1110 -1.5 -4.2 cytosol aminopeptidase compare
Atu4616 -1.5 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu0723 -1.5 -2.1 FAD dependent oxidoreductase compare
Atu2249 -1.4 -1.2 hypothetical protein compare
Atu2692 -1.4 -4.4 intracellular septation protein compare
Atu2193 -1.3 -1.3 hypothetical protein compare
Atu0086 -1.3 -1.3 ribosome-binding factor A compare
Atu1686 -1.2 -7.5 peptidyl-prolyl cis-trans isomerse D compare
Atu0031 -1.2 -1.8 PTS system, IIA component compare
Atu0972 -1.2 -4.9 lipA protein compare
Atu1225 -1.2 -2.0 hypothetical protein compare
Atu2057 -1.2 -2.2 DNA helicase II compare
Atu4317 -1.2 -2.2 TetR family transcriptional regulator compare
Atu0319 -1.2 -1.4 ubiquinone biosynthesis protein compare
Atu3754 -1.2 -5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1844 -1.1 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu3486 -1.1 -3.2 DeoR family transcriptional regulator compare
Atu3598 -1.1 -1.5 thiol:disulfide interchange protein compare
Atu2040 -1.1 -4.2 phosphoserine phosphatase compare
Atu0211 -1.1 -5.5 hypothetical protein compare
Atu1714 -1.1 -1.7 exonuclease III compare
Atu2113 -1.1 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2728 -1.1 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0953 -1.1 -1.4 hypothetical protein compare
Atu2073 -1.1 -2.7 membrane protein compare
Atu0040 -1.1 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4053 -1.0 -1.6 succinoglycan biosynthesis protein compare
Atu0726 -1.0 -6.0 ring hydroxylating dioxygenase, alpha-subunit compare
Atu0322 -1.0 -3.6 enoyl CoA hydratase compare
Atu3011 -1.0 -3.7 ArsR family transcriptional regulator compare
Atu1359 -1.0 -1.0 dnaK deletion suppressor protein compare
Atu2650 -1.0 -6.5 glycerol-3-phosphate dehydrogenase compare
Atu3712 -1.0 -0.9 hypothetical protein compare
Atu2433 -1.0 -1.2 hypothetical protein compare
Atu4896 -0.9 -1.9 acetyltransferase compare
Atu4882 -0.9 -2.1 hypothetical protein compare
Atu1468 -0.9 -5.3 hypothetical protein compare
Atu1850 -0.9 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0030 -0.9 -1.3 phosphocarrier protein HPr compare
Atu0025 -0.9 -2.0 hypothetical protein compare
Atu2640 -0.9 -2.9 hypothetical protein compare
Atu1076 -0.9 -2.4 colicin V production protein compare
Atu3031 -0.9 -1.3 hypothetical protein compare
Atu1457 -0.9 -2.1 hypothetical protein compare
Atu0029 -0.9 -3.5 S-adenosylhomocysteine hydrolase compare
Atu2439 -0.9 -0.8 hypothetical protein compare
Atu0837 -0.9 -2.7 transcriptional regulator, MarR family compare
Atu4108 -0.9 -4.1 ribonuclease D compare
Atu0876 -0.9 -1.4 superoxide dismutase compare
Atu1075 -0.9 -4.0 amidophosphoribosyltransferase compare
Atu1845 -0.9 -2.4 phosphoribosylformylglycinamidine synthase I compare
Atu2114 -0.9 -3.5 molecular chaperone, DnaJ family compare
Atu2504 -0.9 -3.1 transcriptional regulator, GntR family compare
Atu3707 -0.8 -1.6 phosphoserine aminotransferase compare
Atu4075 -0.8 -4.2 glycogen synthase compare
Atu3608 -0.8 -4.1 hypothetical protein compare
Atu4897 -0.8 -1.3 hypothetical protein compare
Atu2682 -0.8 -2.0 hypothetical protein compare
Atu2800 -0.8 -2.8 precorrin-3B C17-methyltransferase compare
Atu0401 -0.8 -3.3 fructokinase compare
Atu8118 -0.8 -3.3 putative universal stress protein compare
Atu2787 -0.8 -0.9 hypothetical protein compare
Atu1140 -0.8 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2021 -0.8 -2.3 transcriptional regulator, AraC family compare
Atu4866 -0.8 -3.0 hypothetical protein compare
Atu1339 -0.8 -3.4 ribonuclease E compare
Atu2798 -0.8 -3.4 precorrin-6y methyltransferase compare
Atu4857 -0.8 -4.2 mobilization protein C compare
Atu1685 -0.8 -0.8 hypothetical protein compare
Atu2125 -0.8 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1141 -0.8 -2.9 Phosphoribosylglycinamide synthetase compare
Atu1968 -0.8 -1.7 hypothetical protein compare
Atu1760 -0.8 -1.2 hypothetical protein compare
Atu0421 -0.8 -1.2 ABC transporter, membrane spanning protein compare
Atu0598 -0.8 -4.6 phosphogluconate dehydratase compare
Atu2067 -0.8 -1.0 hypothetical protein compare
Atu4418 -0.8 -2.8 glutaryl-CoA dehydrogenase compare
Atu1077 -0.8 -2.2 DNA repair protein compare
Atu3018 -0.8 -2.9 hypothetical protein compare
Atu0388 -0.8 -5.2 two component sensor kinase compare
Atu4840 -0.7 -3.7 hypothetical protein compare
Atu3674 -0.7 -2.5 hypothetical protein compare
Atu8138 -0.7 -1.3 hypothetical protein compare
Atu1454 -0.7 -3.6 siroheme synthase compare
Atu1739 -0.7 -2.1 permease compare
Atu3012 -0.7 -1.7 hypothetical protein compare
Atu4841 -0.7 -3.6 DeoR family transcriptional regulator compare
Atu0977 -0.7 -3.7 serine protease DO-like protease compare
Atu2808 -0.7 -3.1 cobyric acid synthase compare
Atu2809 -0.7 -4.3 cobalamin biosynthesis protein compare
Atu2805 -0.7 -3.4 cobalamin synthesis protein compare
Atu4889 -0.7 -2.7 hypothetical protein compare
Atu2722 -0.7 -3.9 porin compare
Atu3016 -0.7 -3.9 phosphoglyceromutase compare
Atu0947 -0.7 -2.1 transcriptional regulator, AsnC family compare
Atu4890 -0.7 -1.3 IS426 transposase compare
Atu1588 -0.7 -4.5 homoserine dehydrogenase compare
Atu2772 -0.7 -1.9 Invasion protein A compare
Atu2802 -0.7 -2.9 precorrin-8X methylmutase compare
Atu0986 -0.7 -1.1 hypothetical protein compare
Atu1456 -0.7 -4.2 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3492 -0.7 -2.3 sugar kinase compare
Atu3483 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2766 -0.7 -5.7 NAD-glutamate dehydrogenase compare
Atu0041 -0.7 -0.9 glutamine amidotransferase compare
Atu2799 -0.7 -1.9 precorrin-6x reductase compare
Atu0346 -0.7 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2052 -0.7 -3.6 hypothetical protein compare
Atu0369 -0.7 -2.2 hypothetical protein compare
Atu4881 -0.7 -3.4 hypothetical protein compare
Atu0698 -0.7 -3.3 hypothetical protein compare
Atu4892 -0.7 -4.4 hypothetical protein compare
Atu2183 -0.7 -4.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3473 -0.6 -4.1 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu5437 -0.6 -2.4 hypothetical protein compare
Atu1422 -0.6 -3.9 transcriptional regulator, MarR family compare
Atu2662 -0.6 -1.0 acetyltransferase compare
Atu3353 -0.6 -3.5 mannose-1-phosphate guanylyltransferase compare
Atu3912 -0.6 -3.4 hypothetical protein compare
Atu4864 -0.6 -3.5 MarR family transcriptional regulator compare
Atu2807 -0.6 -3.4 cob(I)alamin adenosyltransferase compare
Atu3121 -0.6 -0.9 cold shock protein compare
Atu8126 -0.6 -3.0 putative phage tail protein I compare
Atu2796 -0.6 -2.7 precorrin-4 C11-methyltransferase compare
Atu0503 -0.6 -4.7 enoyl-CoA hydratase compare
Atu0103 -0.6 -4.0 penicillin-binding protein compare
Atu0190 -0.6 -3.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2237 -0.6 -2.2 cytochrome c1 compare
Atu4873 -0.6 -2.1 TetR family transcriptional regulator compare
Atu3032 -0.6 -1.7 hypothetical protein compare
Atu4618 -0.6 -4.1 dTDP-rhamnose-3,5-epimerase compare
Atu0331 -0.6 -1.9 sigma-54 modulation protein compare
Atu1495 -0.6 -2.1 hypothetical protein compare
Atu4613 -0.6 -4.7 glycosyltransferase compare
Atu4874 -0.6 -3.7 hypothetical protein compare
Atu0727 -0.6 -4.0 ferredoxin I compare
Atu3036 -0.6 -2.1 dipeptide ABC transporter permease compare
Atu5429 -0.6 -2.2 transcriptional regulator compare
Atu5115 -0.6 -1.1 hypothetical protein compare
Atu3697 -0.6 -3.2 ATP-dependent protease LA 2 compare
Atu0973 -0.6 -3.7 cycH protein compare
Atu0784 -0.6 -1.9 hypothetical protein compare
Atu2733 -0.6 -2.1 hypothetical protein compare
Atu2768 -0.6 -2.3 hypothetical protein compare
Atu1725 -0.6 -1.5 hypothetical protein compare
Atu0470 -0.6 -1.6 hypothetical protein compare
Atu0188 -0.6 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0501 -0.6 -4.1 acyl-CoA dehydrogenase compare
Atu1021 -0.6 -1.6 outer membrane protein compare
Atu4144 -0.6 -0.8 hypothetical protein compare
Atu3008 -0.6 -0.9 hypothetical protein compare
Atu8053 -0.6 -1.5 hypothetical protein compare
Atu4854 -0.6 -3.0 hypothetical protein compare
Atu2804 -0.6 -3.9 cobaltochelatase subunit compare
Atu0912 -0.6 -0.7 Na+/H+ antiporter compare
Atu4217 -0.6 -0.9 TetR family transcriptional regulator compare
Atu1902 -0.6 -2.2 transketolase compare
Atu3496 -0.6 -2.1 hypothetical protein compare
Atu2616 -0.6 -3.2 hypothetical protein compare
Atu0437 -0.6 -3.6 hypothetical protein compare
Atu4245 -0.6 -2.1 polyamine ABC transporter permease compare
Atu1709 -0.6 -2.9 glycosyl hydrolase compare
Atu4869 -0.6 -2.5 hypothetical protein compare
Atu4614 -0.6 -2.4 glycosyltransferase compare
Atu5475 -0.6 -1.3 hypothetical protein compare
Atu0189 -0.5 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu4858 -0.5 -4.5 virulence virD4-like protein compare
Atu8035 -0.5 -1.2 hypothetical protein compare
Atu4860 -0.5 -2.6 hypothetical protein compare
Atu0535 -0.5 -2.8 hypothetical protein compare
Atu1057 -0.5 -2.8 ADP-Ribose Pyrophosphatase compare
Atu0762 -0.5 -2.2 hypothetical protein compare
Atu1380 -0.5 -2.1 zinc metallopeptidase compare
Atu4458 -0.5 -1.7 hypothetical protein compare
Atu5146 -0.5 -0.7 hypothetical protein compare
Atu1774 -0.5 -3.0 ABC transporter, substrate binding protein (peptide) compare
Atu0422 -0.5 -1.1 ABC transporter, membrane spanning protein compare
Atu0817 -0.5 -3.5 sulfate adenylate transferase, subunit 2 compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress sodium iodate across organisms