Experiment set4IT032 for Agrobacterium fabrum C58
R2A with Sodium bromate 5 mM
Group: stressMedia: R2A + Sodium bromate (5 mM)
Culturing: Agro_ML11, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Mitchell Thompson on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 3 H4
Specific Phenotypes
For 6 genes in this experiment
For stress Sodium bromate in Agrobacterium fabrum C58
For stress Sodium bromate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Molybdenum cofactor biosynthesis | 4 |
| Anaerobic respiratory reductases | 1 |
| Transport of Molybdenum | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| formate oxidation to CO2 | 1 | 1 | 1 |
| molybdenum cofactor biosynthesis | 3 | 1 | 1 |
| oxalate degradation VI | 4 | 1 | 1 |
| tRNA-uridine 2-thiolation (thermophilic bacteria) | 5 | 2 | 1 |
| oxalate degradation III | 5 | 1 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 5 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 5 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 14 | 1 |