Experiment set4IT029 for Agrobacterium fabrum C58
R2A with Sodium Chlorate 400 mM
Group: stressMedia: R2A + Sodium Chlorate (400 mM)
Culturing: Agro_ML11, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Mitchell Thompson on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1 E4
Specific Phenotypes
For 13 genes in this experiment
For stress Sodium Chlorate in Agrobacterium fabrum C58
For stress Sodium Chlorate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| molybdenum cofactor biosynthesis | 3 | 1 | 1 |
| glycogen biosynthesis I (from ADP-D-Glucose) | 4 | 4 | 1 |
| glycogen biosynthesis II (from UDP-D-Glucose) | 4 | 1 | 1 |
| starch biosynthesis | 10 | 6 | 2 |
| tRNA-uridine 2-thiolation (thermophilic bacteria) | 5 | 2 | 1 |
| molybdopterin biosynthesis | 6 | 2 | 1 |
| glycogen biosynthesis III (from α-maltose 1-phosphate) | 8 | 2 | 1 |