Experiment set4IT027 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium nitrate 375 mM

200 most important genes:

  gene name fitness t score description  
Atu0017 -2.9 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2684 -2.8 -2.3 hypothetical protein compare
Atu1566 -2.6 -1.9 hypothetical protein compare
Atu1688 -2.2 -4.5 indole-3-glycerol-phosphate synthase compare
Atu1307 -2.0 -4.0 dihydroorotase compare
Atu2289 -2.0 -10.6 anthranilate synthase component I and II compare
Atu0486 -2.0 -4.0 dihydroorotate dehydrogenase compare
Atu3598 -2.0 -2.0 thiol:disulfide interchange protein compare
Atu0346 -2.0 -5.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0434 -1.9 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1687 -1.9 -6.0 anthranilate phosphoribosyltransferase compare
Atu0039 -1.8 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -1.7 -4.5 dihydroorotase compare
Atu0400 -1.7 -3.5 orotate phosphoribosyltransferase compare
Atu0189 -1.7 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0188 -1.6 -4.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3469 -1.6 -2.9 phosphoglyceromutase compare
Atu1030 -1.5 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1308 -1.5 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1686 -1.4 -7.4 peptidyl-prolyl cis-trans isomerse D compare
Atu0103 -1.4 -7.5 penicillin-binding protein compare
Atu2710 -1.4 -6.1 hypothetical protein compare
Atu0876 -1.4 -1.4 superoxide dismutase compare
Atu4317 -1.4 -2.8 TetR family transcriptional regulator compare
Atu0723 -1.3 -2.5 FAD dependent oxidoreductase compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu2067 -1.3 -1.4 hypothetical protein compare
Atu2728 -1.3 -3.7 beta (1-->2) glucan export ATP-binding protein compare
Atu3712 -1.3 -2.1 hypothetical protein compare
Atu0225 -1.2 -1.2 hypothetical protein compare
Atu1754 -1.2 -1.6 hypothetical protein compare
Atu1163 -1.2 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0972 -1.2 -3.4 lipA protein compare
Atu1874 -1.2 -2.2 RecA protein compare
Atu0777 -1.2 -0.9 hypothetical protein compare
Atu0647 -1.2 -3.8 phosphoribosylamine--glycine ligase compare
Atu3429 -1.1 -1.7 hypothetical protein compare
Atu1446 -1.1 -2.3 two component response regulator compare
Atu4773 -1.1 -1.3 two component response regulator compare
Atu2793 -1.1 -3.5 cobyrinic acid a,c-diamide synthase compare
Atu3468 -1.1 -1.1 hypothetical protein compare
Atu0421 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu1850 -1.0 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu2692 -1.0 -2.5 intracellular septation protein compare
Atu0190 -1.0 -4.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0971 -1.0 -4.0 two component sensor kinase compare
Atu1845 -1.0 -3.4 phosphoribosylformylglycinamidine synthase I compare
Atu3754 -1.0 -3.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2809 -1.0 -5.4 cobalamin biosynthesis protein compare
Atu2799 -1.0 -2.9 precorrin-6x reductase compare
Atu1219 -0.9 -0.6 hypothetical protein compare
Atu2616 -0.9 -5.4 hypothetical protein compare
Atu2805 -0.9 -4.0 cobalamin synthesis protein compare
Atu6189 -0.9 -1.1 protein secretion chaperone compare
Atu1774 -0.9 -4.8 ABC transporter, substrate binding protein (peptide) compare
Atu1110 -0.9 -2.8 cytosol aminopeptidase compare
Atu3045 -0.9 -3.7 hypothetical protein compare
Atu1354 -0.9 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2113 -0.9 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu0535 -0.9 -3.7 hypothetical protein compare
Atu3634 -0.9 -3.5 penicillin-binding protein dacf precursor compare
Atu0598 -0.8 -3.9 phosphogluconate dehydratase compare
Atu2650 -0.8 -5.7 glycerol-3-phosphate dehydrogenase compare
Atu1739 -0.8 -3.7 permease compare
Atu1844 -0.8 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0467 -0.8 -2.7 hypothetical protein compare
Atu2073 -0.8 -2.2 membrane protein compare
Atu1891 -0.8 -1.9 cobalamin biosynthesis protein compare
Atu2807 -0.8 -4.5 cob(I)alamin adenosyltransferase compare
Atu3483 -0.8 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0237 -0.8 -2.8 hypothetical protein compare
Atu0846 -0.8 -2.3 transcriptional regulator, MarR family compare
Atu2802 -0.8 -3.2 precorrin-8X methylmutase compare
Atu1075 -0.8 -3.6 amidophosphoribosyltransferase compare
Atu0795 -0.7 -1.2 hypothetical protein compare
Atu2615 -0.7 -5.1 hypothetical protein compare
Atu2640 -0.7 -2.7 hypothetical protein compare
Atu0298 -0.7 -2.6 orotidine 5 compare
Atu2183 -0.7 -4.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0331 -0.7 -2.2 sigma-54 modulation protein compare
Atu1685 -0.7 -0.7 hypothetical protein compare
Atu2040 -0.7 -3.4 phosphoserine phosphatase compare
Atu3593 -0.7 -3.6 hypothetical protein compare
Atu3707 -0.7 -1.8 phosphoserine aminotransferase compare
Atu4674 -0.7 -4.2 GntR family transcriptional regulator compare
Atu4686 -0.7 -1.7 hypothetical protein compare
Atu2634 -0.7 -1.9 hypothetical protein compare
Atu3579 -0.7 -2.4 lactoylglutathione lyase compare
Atu1364 -0.7 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2439 -0.7 -0.9 hypothetical protein compare
Atu1588 -0.7 -4.6 homoserine dehydrogenase compare
Atu0361 -0.7 -1.2 transcriptional regulator compare
Atu0422 -0.7 -1.2 ABC transporter, membrane spanning protein compare
Atu1667 -0.7 -1.1 hypothetical protein compare
Atu0977 -0.7 -2.8 serine protease DO-like protease compare
Atu5125 -0.7 -2.8 GntR family transcriptional regulator compare
Atu1028 -0.7 -0.8 hypothetical protein compare
Atu1057 -0.7 -2.3 ADP-Ribose Pyrophosphatase compare
Atu3496 -0.7 -2.2 hypothetical protein compare
Atu0824 -0.7 -0.9 hypothetical protein compare
Atu0460 -0.6 -3.5 hypothetical protein compare
Atu0322 -0.6 -2.0 enoyl CoA hydratase compare
Atu4567 -0.6 -2.9 ROK family transcriptional regulator compare
Atu2804 -0.6 -4.2 cobaltochelatase subunit compare
Atu0812 -0.6 -1.5 hypothetical protein compare
Atu1750 -0.6 -3.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0185 -0.6 -2.0 methylglyoxal synthase compare
Atu4614 -0.6 -3.5 glycosyltransferase compare
Atu4882 -0.6 -1.7 hypothetical protein compare
Atu1140 -0.6 -2.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1311 -0.6 -1.7 acetyltransferase compare
Atu0947 -0.6 -1.9 transcriptional regulator, AsnC family compare
Atu0464 -0.6 -3.3 hypothetical protein compare
Atu3706 -0.6 -3.5 D-3-phosphoglycerate dehydrogenase compare
Atu0502 -0.6 -3.2 acetyl-CoA acetyltransferase compare
Atu4075 -0.6 -2.2 glycogen synthase compare
Atu4866 -0.6 -1.7 hypothetical protein compare
Atu3031 -0.6 -1.0 hypothetical protein compare
Atu1468 -0.6 -3.2 hypothetical protein compare
Atu0470 -0.6 -1.5 hypothetical protein compare
Atu2368 -0.6 -0.8 hypothetical protein compare
Atu2808 -0.6 -3.4 cobyric acid synthase compare
Atu5034 -0.6 -0.9 hypothetical protein compare
Atu5106 -0.6 -1.1 DNA binding protein compare
Atu2464 -0.6 -1.3 formyltetrahydrofolate deformylase compare
Atu1810 -0.6 -0.7 hypothetical protein compare
Atu2796 -0.6 -2.6 precorrin-4 C11-methyltransferase compare
Atu3071 -0.6 -2.5 hypothetical protein compare
Atu4144 -0.6 -0.8 hypothetical protein compare
Atu3009 -0.6 -0.8 exopolysaccharide production protein compare
Atu3008 -0.6 -0.9 hypothetical protein compare
Atu0728 -0.6 -2.5 hypothetical protein compare
Atu2207 -0.5 -2.5 two component sensor kinase compare
Atu1705 -0.5 -2.0 SEC-independent protein translocase protein compare
Atu0025 -0.5 -1.0 hypothetical protein compare
Atu4618 -0.5 -3.8 dTDP-rhamnose-3,5-epimerase compare
Atu3012 -0.5 -0.9 hypothetical protein compare
Atu2083 -0.5 -1.1 DNA repair protein RecN compare
Atu5464 -0.5 -3.0 IclR family transcriptional regulator compare
Atu2800 -0.5 -1.6 precorrin-3B C17-methyltransferase compare
Atu3395 -0.5 -2.8 iron (III ABC transporter permease ABC transporter permease compare
Atu0813 -0.5 -3.7 hypothetical protein compare
Atu3030 -0.5 -2.9 hypothetical protein compare
Atu3578 -0.5 -2.2 glycerol-3-phosphate dehydrogenase compare
Atu0030 -0.5 -0.8 phosphocarrier protein HPr compare
Atu3910 -0.5 -2.5 LamB/YcsF family protein compare
Atu4502 -0.5 -2.6 cobalamin synthesis protein compare
Atu2344 -0.5 -1.5 lactoylglutathione lyase compare
Atu5088 -0.5 -1.6 hypothetical protein compare
Atu8190 -0.5 -3.0 hypothetical protein compare
Atu4613 -0.5 -4.0 glycosyltransferase compare
Atu3727 -0.5 -2.0 hypothetical protein compare
Atu1542 -0.5 -2.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4888 -0.5 -2.3 hypothetical protein compare
Atu3392 -0.5 -1.3 methyltransferase compare
Atu2795 -0.5 -2.4 cobalamin biosynthetic protein compare
Atu0501 -0.5 -3.4 acyl-CoA dehydrogenase compare
Atu8087 -0.5 -0.6 putative peptidoglycan binding protein compare
Atu3492 -0.5 -2.2 sugar kinase compare
Atu3505 -0.5 -2.7 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1642 -0.5 -1.2 hypothetical protein compare
Atu4896 -0.5 -1.8 acetyltransferase compare
Atu2831 -0.5 -2.0 glucose inhibited division protein A compare
Atu3697 -0.5 -2.2 ATP-dependent protease LA 2 compare
Atu2798 -0.5 -2.0 precorrin-6y methyltransferase compare
Atu1836 -0.5 -1.0 hypothetical protein compare
Atu0727 -0.5 -3.4 ferredoxin I compare
Atu2682 -0.5 -1.8 hypothetical protein compare
Atu2489 -0.5 -2.2 hypothetical protein compare
Atu1902 -0.5 -2.1 transketolase compare
Atu3485 -0.5 -2.9 short chain dehydrogenase compare
Atu3122 -0.5 -1.5 cold shock protein compare
Atu2733 -0.5 -1.6 hypothetical protein compare
Atu2052 -0.5 -2.5 hypothetical protein compare
Atu2788 -0.5 -2.2 citrate lyase, beta subunit compare
Atu4854 -0.5 -2.0 hypothetical protein compare
Atu4873 -0.5 -2.2 TetR family transcriptional regulator compare
Atu4108 -0.5 -2.2 ribonuclease D compare
Atu4214 -0.5 -1.5 cold shock protein compare
Atu6114 -0.5 -0.8 hypothetical protein compare
Atu3480 -0.5 -2.7 hydroxymethylglutaryl-CoA lyase compare
Atu0471 -0.4 -1.4 hypothetical protein compare
Atu1189 -0.4 -1.3 hypothetical protein compare
Atu4187 -0.4 -0.7 tRNA-Met compare
Atu2766 -0.4 -3.8 NAD-glutamate dehydrogenase compare
Atu2812 -0.4 -1.8 hypothetical protein compare
Atu3486 -0.4 -1.0 DeoR family transcriptional regulator compare
Atu0184 -0.4 -1.0 glucokinase compare
Atu4890 -0.4 -0.9 IS426 transposase compare
Atu4711 -0.4 -1.8 two component sensor kinase compare
Atu1023 -0.4 -0.9 hypothetical protein compare
Atu4893 -0.4 -2.2 hypothetical protein compare
Atu1373 -0.4 -2.4 hypothetical protein compare
Atu1447 -0.4 -1.0 two component sensor kinase compare
Atu3011 -0.4 -1.4 ArsR family transcriptional regulator compare
Atu4514 -0.4 -1.2 RpiR family transcriptional regulator compare
Atu1620 -0.4 -2.7 triosephosphate isomerase compare
Atu3311 -0.4 -3.0 phosphomannose isomerase compare
Atu1782 -0.4 -2.1 hypothetical protein compare
Atu0135 -0.4 -0.7 uracil phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Sodium nitrate across organisms