Experiment set4IT025 for Pseudomonas putida KT2440

Compare to:

LB with 3-methyl-3-butenol (pure) 0.25 vol%

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.6 -8.3 conserved protein of unknown function compare
PP_4999 -3.3 -3.1 dihydroorotase-like protein compare
PP_4799 -3.1 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4696 -2.8 -5.6 Nitrogen regulation protein NR(I) compare
PP_4937 -2.8 -4.2 toluene tolerance protein compare
PP_0339 -2.7 -4.7 Pyruvate dehydrogenase E1 component compare
PP_4943 -2.4 -3.2 putative Glycosyl transferase compare
PP_5146 -2.3 -10.1 RNA pyrophosphohydrolase compare
PP_0345 -2.2 -5.4 putative Heptose kinase WapP compare
PP_0834 -2.2 -3.2 Sec translocation complex subunit YajC compare
PP_4532 -2.1 -2.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2336 -2.1 -3.3 aconitate hydratase 1 compare
PP_5328 -1.8 -3.7 putative phosphate transport system permease protein compare
PP_2356 -1.8 -8.8 putative Phytochrome family protein compare
PP_5338 -1.8 -2.8 aspartate ammonia-lyase compare
PP_4895 -1.7 -2.8 tRNA dimethylallyltransferase compare
PP_5445 -1.7 -2.9 conserved protein of unknown function compare
PP_4268 -1.7 -1.8 nucleoid-associated broad specificity regulator compare
PP_5329 -1.7 -4.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0888 -1.6 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_2144 -1.6 -3.8 Transcriptional regulator, TetR family compare
PP_2354 -1.6 -9.9 Sensory box histidine kinase/response regulator compare
PP_0218 -1.6 -7.2 Sensory box protein compare
PP_4236 -1.6 -5.5 putative Thiol:disulfide interchange protein dsbE compare
PP_1216 -1.6 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4129 -1.6 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2378 -1.6 -2.8 Fe/S biogenesis protein NfuA compare
PP_4004 -1.5 -3.8 DNA translocase FtsK compare
PP_1733 -1.5 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4066 -1.5 -3.8 methylglutaconyl-CoA hydratase compare
PP_0949 -1.5 -4.9 putative ATP-binding protein UPF0042 compare
PP_4121 -1.5 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_0691 -1.5 -3.1 Glutamate 5-kinase compare
PP_0368 -1.4 -7.7 putative Acyl-CoA dehydrogenase compare
PP_4131 -1.4 -5.2 NADH-quinone oxidoreductase subunit N compare
PP_4720 -1.4 -3.4 putative RNA binding protein compare
PP_1217 -1.4 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0846 -1.4 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_2217 -1.4 -3.4 enoyl-CoA hydratase compare
PP_1215 -1.4 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4880 -1.4 -6.5 exoribonuclease R compare
PP_5289 -1.3 -3.1 Acetylglutamate kinase compare
PP_1598 -1.3 -3.4 regulatory intramembrane protein RIP zinc protease compare
PP_2337 -1.3 -2.2 aconitate isomerase compare
PP_2136 -1.3 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0346 -1.3 -5.5 putative Heptose kinase WapQ compare
PP_1713 -1.2 -2.7 Transcriptional regulator PcaQ compare
PP_4482 -1.2 -3.5 Transcriptional regulator, AraC family compare
PP_2884 -1.2 -5.5 XRE family transcriptional regulator compare
PP_5706 -1.2 -2.2 Sec translocation complex - SecG subunit compare
PP_4264 -1.2 -6.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1224 -1.2 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_4515 -1.2 -6.2 Transcriptional regulator, MarR family compare
PP_4143 -1.2 -3.0 conserved protein of unknown function compare
PP_2720 -1.2 -1.6 conserved protein of unknown function compare
PP_5248 -1.2 -1.9 putative hydrolase compare
PP_3434 -1.2 -2.8 conserved protein of unknown function compare
PP_0593 -1.1 -1.3 putative ribosome-binding factor compare
PP_2137 -1.1 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_4124 -1.1 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_0794 -1.1 -2.9 1-phosphofructokinase monomer compare
PP_2031 -1.1 -2.1 conserved protein of unknown function compare
PP_2214 -1.1 -3.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2215 -1.1 -3.0 acetyl-CoA acetyltransferase compare
PP_1994 -1.1 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_3037 -1.1 -2.9 C4-type zinc finger protein, DksA/TraR family compare
PP_0401 -1.1 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_1362 -1.0 -2.9 pyruvate kinase II compare
PP_2304 -1.0 -5.2 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2433 -1.0 -1.4 conserved protein of unknown function compare
PP_3649 -1.0 -3.0 Transcriptional regulator, GntR family compare
PP_t49 -1.0 -2.0 tRNA-Met compare
PP_2181 -1.0 -3.5 Transcriptional regulator, Cro/CI family compare
PP_3002 -1.0 -3.0 shikimate dehydrogenase-related enzyme compare
PP_3447 -1.0 -1.5 conserved membrane protein of unknown function compare
PP_0872 -1.0 -4.3 Peptide chain release factor 3 compare
PP_1237 -1.0 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1344 -1.0 -1.4 conserved protein of unknown function compare
PP_4247 -1.0 -1.1 Exonuclease compare
PP_1036 -1.0 -4.8 membrane-bound lytic murein transglycosylase F compare
PP_2030 -1.0 -3.1 conserved protein of unknown function compare
PP_4065 -0.9 -6.0 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4902 -0.9 -1.9 Oligoribonuclease compare
PP_4942 -0.9 -2.0 conserved protein of unknown function compare
PP_5533 -0.9 -1.5 conserved protein of unknown function compare
PP_5227 -0.9 -4.0 diaminopimelate decarboxylase compare
PP_0513 -0.9 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3808 -0.9 -1.3 Antibiotic synthesis protein MbtH compare
PP_2328 -0.9 -3.8 Phosphoadenosine phosphosulfate reductase compare
PP_3460 -0.9 -2.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4993 -0.9 -2.5 Glutathione synthetase compare
PP_3451 -0.9 -3.7 conserved exported protein of unknown function compare
PP_4102 -0.9 -3.3 conserved protein of unknown function compare
PP_0246 -0.9 -1.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_1268 -0.9 -2.5 putative HtrA suppressor protein sohA compare
PP_5014 -0.9 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4700 -0.9 -0.6 pantothenate synthetase compare
PP_5310 -0.9 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_4997 -0.9 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5327 -0.8 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_t10 -0.8 -1.7 tRNA-Pro compare
PP_5719 -0.8 -4.1 choline-responsive transcriptional repressor BetI compare
PP_2029 -0.8 -1.2 von Willebrand factor type A domain protein compare
PP_5393 -0.8 -1.1 putative metal-binding chaperone compare
PP_0905 -0.8 -1.8 conserved exported protein of unknown function compare
PP_1864 -0.8 -2.3 conserved protein of unknown function compare
PP_2442 -0.8 -2.0 conserved protein of unknown function, DUF480 family compare
PP_4989 -0.8 -2.3 Protein PilJ compare
PP_2189 -0.8 -2.2 conserved protein of unknown function compare
PP_4120 -0.8 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_2878 -0.8 -1.3 conserved protein of unknown function compare
PP_0941 -0.8 -3.1 putative ribosome associated protein compare
PP_4964 -0.8 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1824 -0.8 -1.6 Smr domain protein compare
PP_2908 -0.8 -2.9 DNA-binding transcriptional repressor compare
PP_4916 -0.8 -2.9 putative esterase compare
PP_0007 -0.8 -2.2 conserved hypothetical protein compare
PP_2087 -0.7 -1.5 CmpX protein compare
PP_0153 -0.7 -1.9 hypothetical protein compare
PP_5054 -0.7 -1.2 glutaredoxin 3 compare
PP_4738 -0.7 -1.7 conserved exported protein of unknown function compare
PP_5610 -0.7 -1.7 protein of unknown function compare
PP_0063 -0.7 -1.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5423 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_2429 -0.7 -1.4 putative Membrane protein compare
PP_1979 -0.7 -1.9 putative Hydrolase compare
PP_4067 -0.7 -3.4 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5191 -0.7 -1.4 conserved exported protein of unknown function compare
PP_1734 -0.7 -1.5 Probable septum site-determining protein MinC compare
PP_0719 -0.7 -0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1078 -0.7 -4.0 putative ABC transporter, ATP-binding protein compare
PP_0757 -0.7 -3.6 conserved protein of unknown function compare
PP_4235 -0.7 -3.7 thiol/disulfide interchange protein 2 compare
PP_4722 -0.7 -2.8 Transcription elongation factor GreA compare
PP_0833 -0.7 -1.0 queuine tRNA-ribosyltransferase compare
PP_4424 -0.7 -1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0274 -0.7 -1.4 putative transcriptional regulator containing HTH domain compare
PP_5352 -0.7 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2820 -0.7 -0.9 HTH-type transcriptional regulator nfxB compare
PP_2718 -0.7 -1.7 arsenic resistance transcriptional regulator compare
PP_1322 -0.6 -1.2 putative Lipoprotein compare
PP_4122 -0.6 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1261 -0.6 -1.4 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_1353 -0.6 -1.3 conserved membrane protein of unknown function compare
PP_1695 -0.6 -4.0 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_4824 -0.6 -2.7 Sensor histidine kinase/response regulator compare
PP_5230 -0.6 -1.7 Tyrosine recombinase XerC compare
PP_2581 -0.6 -1.2 conserved protein of unknown function compare
PP_4329 -0.6 -1.8 FlhB domain protein compare
PP_1185 -0.6 -1.9 Outer membrane protein H1 compare
PP_1635 -0.6 -1.6 DNA-binding response regulator compare
PP_4419 -0.6 -1.3 transposase compare
PP_5022 -0.6 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_0957 -0.6 -1.6 D-arabinose 5-phosphate isomerase compare
PP_4064 -0.6 -4.4 isovaleryl-CoA dehydrogenase compare
PP_1249 -0.6 -2.5 conserved protein of unknown function, DUF4223 family compare
PP_3662 -0.6 -3.6 conserved protein of unknown function compare
PP_2341 -0.6 -1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4362 -0.6 -1.9 conserved protein of unknown function compare
PP_1763 -0.6 -1.8 putative oxidoreductase compare
PP_4133 -0.6 -0.9 Transcriptional regulator-related protein compare
PP_1862 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_4930 -0.6 -2.2 putative small multidrug resistance protein compare
PP_4196 -0.6 -1.2 conserved exported protein of unknown function compare
PP_2311 -0.6 -2.4 Mg-dependent cytoplasmic DNase / RNase compare
PP_5095 -0.6 -0.7 pyrroline-5-carboxylate reductase compare
PP_3891 -0.6 -1.8 conserved protein of unknown function compare
PP_0244 -0.6 -2.0 conserved protein of unknown function compare
PP_4546 -0.6 -1.7 ATP-dependent helicase HrpA compare
PP_5350 -0.6 -1.5 Transcriptional regulator, RpiR family compare
PP_1571 -0.6 -1.9 conserved protein of unknown function compare
PP_1719 -0.6 -3.2 Tail-specific protease prc compare
PP_4475 -0.6 -3.0 succinylglutamate desuccinylase compare
PP_0978 -0.6 -1.6 conserved protein of unknown function compare
PP_2764 -0.6 -2.1 FMN reductase (NADPH) compare
PP_3539 -0.6 -1.8 putative Transcriptional regulator compare
PP_5161 -0.5 -2.6 putative lysophospholipase compare
PP_2972 -0.5 -0.9 conserved protein of unknown function compare
PP_2388 -0.5 -1.7 Transporter, LysE family compare
PP_4328 -0.5 -2.2 conserved protein of unknown function compare
PP_1493 -0.5 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2414 -0.5 -1.1 conserved exported protein of unknown function compare
PP_1714 -0.5 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_0683 -0.5 -1.5 conserved protein of unknown function compare
PP_0435 -0.5 -2.8 Peptidase, M23/M37 family compare
PP_4008 -0.5 -2.9 ATP-dependent serine protease compare
PP_0753 -0.5 -2.9 putative Lipoprotein compare
PP_0900 -0.5 -1.2 PAP2 family protein compare
PP_2575 -0.5 -1.1 conserved exported protein of unknown function compare
PP_t12 -0.5 -0.8 tRNA-Thr compare
PP_0113 -0.5 -2.6 methionine ABC transporter, permease protein compare
PP_5100 -0.5 -1.4 dITP/XTP pyrophosphatase compare
PP_4944 -0.5 -2.0 Carbamoyltransferase compare
PP_0003 -0.5 -1.4 16S RNA methyltransferase compare
PP_1523 -0.5 -2.0 conserved protein of unknown function compare
PP_0086 -0.5 -1.4 conserved protein of unknown function compare
PP_4197 -0.5 -3.5 Transcriptional regulator, GntR family compare
PP_2027 -0.5 -2.5 conserved exported protein of unknown function compare
PP_4485 -0.5 -2.7 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_0848 -0.5 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare


Specific Phenotypes

For 3 genes in this experiment

For stress 3-methyl-3-butenol (pure) in Pseudomonas putida KT2440

For stress 3-methyl-3-butenol (pure) across organisms