Experiment set4IT023 for Pseudomonas putida KT2440

Compare to:

LB with 3-methyl-3-butenol (commercial) 0.25 vol%

200 most important genes:

  gene name fitness t score description  
PP_4696 -3.2 -5.7 Nitrogen regulation protein NR(I) compare
PP_0339 -2.4 -5.0 Pyruvate dehydrogenase E1 component compare
PP_2136 -2.3 -5.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5706 -2.3 -2.6 Sec translocation complex - SecG subunit compare
PP_2336 -2.2 -3.6 aconitate hydratase 1 compare
PP_1994 -2.2 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_0345 -2.2 -4.6 putative Heptose kinase WapP compare
PP_5329 -2.1 -4.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4937 -1.9 -3.9 toluene tolerance protein compare
PP_4799 -1.8 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4895 -1.8 -3.2 tRNA dimethylallyltransferase compare
PP_2378 -1.8 -3.0 Fe/S biogenesis protein NfuA compare
PP_4136 -1.8 -2.1 Transcriptional regulator, LuxR family compare
PP_4236 -1.7 -5.7 putative Thiol:disulfide interchange protein dsbE compare
PP_4999 -1.7 -2.2 dihydroorotase-like protein compare
PP_2137 -1.7 -3.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_4129 -1.6 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1598 -1.6 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_4993 -1.6 -3.8 Glutathione synthetase compare
PP_4880 -1.5 -6.9 exoribonuclease R compare
PP_0775 -1.5 -2.8 conserved protein of unknown function compare
PP_0164 -1.4 -5.6 conserved protein of unknown function compare
PP_2214 -1.4 -4.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2773 -1.4 -2.3 conserved protein of unknown function compare
PP_0368 -1.3 -7.1 putative Acyl-CoA dehydrogenase compare
PP_2217 -1.3 -3.7 enoyl-CoA hydratase compare
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4964 -1.3 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4121 -1.3 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1824 -1.2 -2.7 Smr domain protein compare
PP_1142 -1.2 -1.4 conserved protein of unknown function compare
PP_4124 -1.2 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_4517 -1.2 -2.3 conserved protein of unknown function compare
PP_5146 -1.2 -5.9 RNA pyrophosphohydrolase compare
PP_0001 -1.2 -1.7 probable chromosome-partitioning protein compare
PP_4199 -1.2 -1.4 putative Lipoprotein compare
PP_4515 -1.2 -5.8 Transcriptional regulator, MarR family compare
PP_1616 -1.2 -5.8 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4296 -1.1 -2.1 conserved exported protein of unknown function compare
PP_4126 -1.1 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_5328 -1.1 -2.1 putative phosphate transport system permease protein compare
PP_5095 -1.1 -1.2 pyrroline-5-carboxylate reductase compare
PP_2354 -1.1 -6.7 Sensory box histidine kinase/response regulator compare
PP_4546 -1.1 -2.8 ATP-dependent helicase HrpA compare
PP_1733 -1.1 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5295 -1.1 -2.4 conserved protein of unknown function compare
PP_4804 -1.1 -1.4 RlpA-like lipoprotein compare
PP_1783 -1.1 -1.5 dTDP-glucose pyrophosphorylase compare
PP_5054 -1.1 -1.8 glutaredoxin 3 compare
PP_5055 -1.0 -2.7 Sulfurtransferase compare
PP_0848 -1.0 -2.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4342 -1.0 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_1713 -1.0 -1.8 Transcriptional regulator PcaQ compare
PP_0957 -1.0 -2.3 D-arabinose 5-phosphate isomerase compare
PP_4120 -1.0 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_0246 -1.0 -2.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_0949 -1.0 -3.7 putative ATP-binding protein UPF0042 compare
PP_4273 -1.0 -1.7 Transcriptional regulator, MerR family compare
PP_4997 -1.0 -2.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4130 -1.0 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5039 -1.0 -2.8 conserved protein of unknown function compare
PP_5546 -1.0 -1.7 conserved protein of unknown function compare
PP_2334 -1.0 -4.5 2-methylisocitrate lyase compare
PP_2575 -1.0 -1.5 conserved exported protein of unknown function compare
PP_4824 -1.0 -3.8 Sensor histidine kinase/response regulator compare
PP_0346 -1.0 -5.7 putative Heptose kinase WapQ compare
PP_3810 -1.0 -2.6 conserved protein of unknown function compare
PP_4700 -1.0 -0.6 pantothenate synthetase compare
PP_0218 -0.9 -4.5 Sensory box protein compare
PP_2337 -0.9 -1.7 aconitate isomerase compare
PP_4722 -0.9 -3.0 Transcription elongation factor GreA compare
PP_1099 -0.9 -1.9 Cold shock protein CapB compare
PP_1036 -0.9 -4.4 membrane-bound lytic murein transglycosylase F compare
PP_0872 -0.9 -3.8 Peptide chain release factor 3 compare
PP_5640 -0.9 -2.7 conserved protein of unknown function compare
PP_4066 -0.9 -2.6 methylglutaconyl-CoA hydratase compare
PP_3640 -0.9 -2.7 Transcriptional regulator, AraC family compare
PP_2356 -0.9 -5.5 putative Phytochrome family protein compare
PP_5008 -0.9 -1.5 Poly granule-associated protein compare
PP_4143 -0.9 -3.2 conserved protein of unknown function compare
PP_1217 -0.9 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4482 -0.9 -2.7 Transcriptional regulator, AraC family compare
PP_2144 -0.9 -2.2 Transcriptional regulator, TetR family compare
PP_5327 -0.9 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4131 -0.9 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_4419 -0.9 -2.6 transposase compare
PP_4910 -0.9 -1.5 conserved protein of unknown function compare
PP_1362 -0.8 -2.5 pyruvate kinase II compare
PP_0833 -0.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_4560 -0.8 -2.9 putative Ribonuclease BN compare
PP_5185 -0.8 -2.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4942 -0.8 -1.8 conserved protein of unknown function compare
PP_4534 -0.8 -3.4 conserved protein of unknown function compare
PP_4098 -0.8 -1.4 UvrABC system protein C compare
PP_3899 -0.8 -1.6 conserved protein of unknown function, hicB family compare
PP_1635 -0.8 -2.8 DNA-binding response regulator compare
PP_0435 -0.8 -4.7 Peptidase, M23/M37 family compare
PP_4004 -0.8 -2.2 DNA translocase FtsK compare
PP_3946 -0.8 -0.9 HTH-type transcriptional repressor NicR compare
PP_1344 -0.8 -1.3 conserved protein of unknown function compare
PP_2793 -0.8 -0.9 Acyl-CoA dehydrogenase family protein compare
PP_2525 -0.8 -1.4 conserved protein of unknown function compare
PP_5441 -0.8 -2.4 protein of unknown function compare
PP_5017 -0.8 -1.0 Sec-independent protein translocase protein TatB compare
PP_0042 -0.8 -3.0 conserved exported protein of unknown function compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_3102 -0.8 -2.4 conserved protein of unknown function compare
PP_4045 -0.8 -1.8 conserved protein of unknown function compare
PP_0719 -0.7 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4504 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4811 -0.7 -2.0 Gamma-glutamyl phosphate reductase compare
PP_3833 -0.7 -2.9 Response regulator compare
PP_1479 -0.7 -1.6 HicB protein compare
PP_0856 -0.7 -1.0 conserved lipoprotein of unknown function compare
PP_3532 -0.7 -1.6 Transcriptional regulator, AsnC family compare
PP_2764 -0.7 -2.6 FMN reductase (NADPH) compare
PP_4943 -0.7 -1.5 putative Glycosyl transferase compare
PP_0035 -0.7 -2.0 putative bactoprenol-linked glycose transferase compare
PP_5600 -0.7 -2.2 conserved protein of unknown function compare
PP_5201 -0.7 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_5230 -0.7 -1.7 Tyrosine recombinase XerC compare
PP_0834 -0.7 -1.5 Sec translocation complex subunit YajC compare
PP_5289 -0.7 -1.6 Acetylglutamate kinase compare
PP_1428 -0.7 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_4265 -0.7 -2.3 DNA-binding transcriptional dual regulator compare
PP_5580 -0.7 -1.1 protein of unknown function compare
PP_1353 -0.7 -1.4 conserved membrane protein of unknown function compare
PP_t10 -0.7 -1.2 tRNA-Pro compare
PP_2433 -0.7 -1.4 conserved protein of unknown function compare
PP_2215 -0.7 -2.1 acetyl-CoA acetyltransferase compare
PP_0832 -0.7 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2459 -0.7 -1.2 ribose pyranase compare
PP_2341 -0.7 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2960 -0.7 -2.5 transcriptional regulator, AraC family compare
PP_5568 -0.6 -3.0 conserved membrane protein of unknown function compare
PP_2142 -0.6 -1.4 Cell division inhibitor SulA compare
PP_4264 -0.6 -4.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5686 -0.6 -2.5 protein of unknown function compare
PP_4362 -0.6 -2.4 conserved protein of unknown function compare
PP_5489 -0.6 -2.3 conserved protein of unknown function compare
PP_5529 -0.6 -2.4 putative epimerase compare
PP_4792 -0.6 -1.6 conserved exported protein of unknown function compare
PP_0393 -0.6 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4817 -0.6 -1.5 MaoC domain protein compare
PP_1352 -0.6 -1.7 UPF0234 protein PP_1352 compare
PP_5212 -0.6 -2.9 Oxidoreductase, iron-sulfur-binding compare
PP_1575 -0.6 -1.7 conserved protein of unknown function compare
PP_2737 -0.6 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0003 -0.6 -1.5 16S RNA methyltransferase compare
PP_5073 -0.6 -1.4 conserved exported protein of unknown function compare
PP_5310 -0.6 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_3041 -0.6 -2.7 conserved protein of unknown function compare
PP_3637 -0.6 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4139 -0.6 -2.1 conserved protein of unknown function compare
PP_4065 -0.6 -3.4 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4064 -0.6 -4.2 isovaleryl-CoA dehydrogenase compare
PP_1078 -0.6 -2.4 putative ABC transporter, ATP-binding protein compare
PP_5548 -0.6 -1.8 protein of unknown function compare
PP_1922 -0.6 -2.3 conserved protein of unknown function compare
PP_0979 -0.6 -2.0 DNA polymerase III subunit chi compare
PP_2655 -0.6 -1.8 conserved protein of unknown function compare
PP_4320 -0.6 -2.3 cytochrome c-type biogenesis protein compare
PP_5100 -0.6 -1.6 dITP/XTP pyrophosphatase compare
PP_1068 -0.6 -2.1 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3392 -0.6 -0.5 conserved protein of unknown function compare
PP_0691 -0.6 -1.5 Glutamate 5-kinase compare
PP_2333 -0.6 -2.4 GntR family transcriptional regulator compare
PP_2083 -0.6 -2.3 putative Lipase compare
PP_1679 -0.6 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5229 -0.6 -2.1 conserved protein of unknown function compare
PP_2027 -0.6 -2.2 conserved exported protein of unknown function compare
PP_t12 -0.6 -0.8 tRNA-Thr compare
PP_2883 -0.6 -1.2 conserved protein of unknown function compare
PP_2568 -0.6 -0.9 Ring-cleaving dioxygenase compare
PP_1489 -0.6 -1.4 CheW domain protein compare
PP_4262 -0.6 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1451 -0.6 -1.6 conserved exported protein of unknown function compare
PP_5227 -0.6 -2.9 diaminopimelate decarboxylase compare
PP_3808 -0.6 -1.0 Antibiotic synthesis protein MbtH compare
PP_0666 -0.6 -2.1 conserved protein of unknown function compare
PP_5445 -0.6 -1.0 conserved protein of unknown function compare
PP_5015 -0.5 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2726 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_5309 -0.5 -2.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2132 -0.5 -2.0 Universal stress protein compare
PP_t49 -0.5 -2.5 tRNA-Met compare
PP_0125 -0.5 -1.5 putative cytochrome c-type protein compare
PP_5216 -0.5 -1.1 exopolyphosphatase compare
PP_3484 -0.5 -2.1 Response regulator receiver protein compare
PP_2884 -0.5 -2.8 XRE family transcriptional regulator compare
PP_4159 -0.5 -1.8 Potassium-transporting ATPase C chain compare
PP_3614 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_2908 -0.5 -1.9 DNA-binding transcriptional repressor compare
PP_3902 -0.5 -1.1 conserved protein of unknown function compare
PP_5669 -0.5 -2.7 ABC transporter related compare
PP_3819 -0.5 -3.1 glutathione reductase (NADPH) compare
PP_2322 -0.5 -2.4 Major outer membrane lipoprotein compare
PP_1292 -0.5 -2.4 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1629 -0.5 -2.4 Protein RecA compare
PP_0653 -0.5 -0.8 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For stress 3-methyl-3-butenol (commercial) in Pseudomonas putida KT2440

For stress 3-methyl-3-butenol (commercial) across organisms