Experiment set4IT023 for Pseudomonas putida KT2440

Compare to:

LB with 3-methyl-3-butenol (commercial) 0.25 vol%

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.6 15.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.1 7.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1728 +2.0 14.8 conserved membrane protein of unknown function compare
PP_1729 +1.3 1.8 conserved protein of unknown function compare
PP_1650 +1.2 11.8 Sensor protein GacS compare
PP_1987 +1.1 3.5 Methlytransferase, UbiE/COQ5 family compare
PP_4693 +1.1 6.0 RNA polymerase-binding transcription factor DksA compare
PP_4099 +1.1 10.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5582 +1.1 2.0 conserved protein of unknown function compare
PP_1553 +1.1 3.3 conserved protein of unknown function compare
PP_5701 +1.0 3.1 conserved protein of unknown function compare
PP_1812 +0.9 2.8 conserved protein of unknown function compare
PP_1386 +0.9 5.3 Probable efflux pump periplasmic linker TtgA compare
PP_4561 +0.9 1.7 stress response protein compare
PP_1309 +0.9 5.2 conserved exported protein of unknown function compare
PP_4355 +0.9 3.0 flagellar export apparatus subunit compare
PP_2107 +0.8 2.2 conserved protein of unknown function compare
PP_2044 +0.8 1.7 conserved inner membrane protein of unknown function compare
PP_1788 +0.8 2.8 conserved protein of unknown function compare
PP_1038 +0.8 2.1 conserved protein of unknown function compare
PP_3365 +0.8 1.6 Acetolactate synthase compare
PP_4367 +0.8 3.0 Flagellar assembly protein FliH compare
PP_4227 +0.8 1.4 conserved protein of unknown function compare
PP_1082 +0.8 4.1 bacterioferritin compare
PP_1521 +0.8 3.6 conserved protein of unknown function compare
PP_t29 +0.8 1.5 tRNA-Ala compare
PP_4593 +0.7 1.8 conserved protein of unknown function compare
PP_1404 +0.7 1.7 conserved protein of unknown function compare
PP_1055 +0.7 1.9 Type II secretion pathway protein GspN compare
PP_4352 +0.7 5.9 flagellin export apparatus, substrate specificity protein compare
PP_5058 +0.7 3.7 Carboxy-terminal-processing protease compare
PP_5000 +0.7 1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4356 +0.7 2.1 Flagellar protein FliO compare
PP_0960 +0.7 3.6 phospholipid ABC transporter binding protein compare
PP_4370 +0.7 3.6 Flagellar hook-basal body complex protein FliE compare
PP_4391 +0.7 4.4 flagellar basal-body rod protein FlgB compare
PP_2070 +0.7 1.9 Transcriptional regulator, AraC family compare
PP_4394 +0.7 4.1 flagella basal body P-ring formation protein compare
PP_1385 +0.7 5.8 Probable efflux pump membrane transporter TtgB compare
PP_4385 +0.7 4.1 flagellar basal-body rod protein FlgG compare
PP_4365 +0.7 3.0 Flagellar protein FliJ compare
PP_1074 +0.7 2.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3312 +0.7 1.5 putative Heat shock protein compare
PP_0556 +0.7 1.9 Acetoin catabolism protein compare
PP_1045 +0.7 1.3 Type II secretion pathway protein XcpP compare
PP_4905 +0.7 4.0 Flagellar motor rotation protein compare
PP_1780 +0.6 5.9 putative mannosyltransferase compare
PP_1087 +0.6 4.1 Outer membrane protein, OmpA family compare
PP_2889 +0.6 2.4 putative Transmembrane regulator PrtR compare
PP_4368 +0.6 3.8 flagellar motor switch protein compare
PP_1075 +0.6 3.9 glycerol kinase compare
PP_5652 +0.6 1.9 conserved protein of unknown function, phage origin compare
PP_0735 +0.6 1.2 molybdopterin-synthase adenylyltransferase compare
PP_3052 +0.6 1.1 conserved protein of unknown function compare
PP_4710 +0.6 4.1 tRNA pseudouridine 55 synthase compare
PP_2530 +0.6 2.0 conserved protein of unknown function compare
PP_2152 +0.6 2.2 glycerophosphoryl diester phosphodiesterase compare
PP_1917 +0.6 3.3 4-amino-4-deoxychorismate lyase compare
PP_3116 +0.6 2.4 transcriptional repressor compare
PP_4384 +0.6 4.4 Flagellar L-ring protein compare
PP_4353 +0.6 3.7 Flagellar biosynthetic protein fliR compare
PP_3191 +0.6 2.2 putative threonine ammonia-lyase / dehydratase compare
PP_1237 +0.6 1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2885 +0.6 2.9 putative Transporter compare
PP_4389 +0.6 3.6 Flagellar basal-body rod modification protein FlgD compare
PP_0065 +0.6 1.9 NAD-binding component of TrK potassium transporter compare
PP_4388 +0.6 4.5 Flagellar hook protein FlgE compare
PP_4382 +0.6 4.4 Peptidoglycan hydrolase FlgJ compare
PP_1799 +0.6 4.8 GDP-mannose 4,6-dehydratase compare
PP_5007 +0.6 1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1208 +0.6 1.4 conserved protein of unknown function, SlyX family compare
PP_1739 +0.6 1.0 conserved membrane protein of unknown function compare
PP_1041 +0.6 1.2 twin arginine protein export complex subunit compare
PP_5022 +0.6 0.8 Glutamine transport ATP-binding protein GlnQ compare
PP_2280 +0.6 1.4 conserved protein of unknown function compare
PP_4390 +0.6 3.6 flagellar basal-body rod protein FlgC compare
PP_3359 +0.6 1.5 putative Hydroxycinnamic acid degradation regulator compare
PP_0434 +0.6 4.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4366 +0.6 4.2 flagellum-specific ATP synthase compare
PP_3460 +0.6 1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0025 +0.5 1.0 hypothetical protein compare
PP_2172 +0.5 1.8 conserved exported protein of unknown function compare
PP_0674 +0.5 4.2 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4369 +0.5 3.2 Flagellar M-ring protein compare
PP_2864 +0.5 1.8 conserved protein of unknown function compare
PP_4477 +0.5 3.6 N-succinylarginine dihydrolase compare
PP_4341 +0.5 3.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2309 +0.5 1.0 conserved protein of unknown function compare
PP_4383 +0.5 2.4 Flagellar P-ring protein compare
PP_1683 +0.5 1.2 Transcriptional regulator, MarR family compare
PP_1097 +0.5 0.6 Methionine--tRNA ligase compare
PP_0683 +0.5 2.0 conserved protein of unknown function compare
PP_1193 +0.5 2.6 conserved membrane protein of unknown function compare
PP_4808 +0.5 1.1 23S rRNA m3psi1915 methyltransferase compare
PP_5644 +0.5 1.2 conserved membrane protein of unknown function compare
PP_3892 +0.5 1.1 conserved protein of unknown function compare
PP_0781 +0.5 1.5 conserved protein of unknown function compare
PP_4354 +0.5 2.0 flagellar export apparatus subunit compare
PP_0058 +0.5 4.3 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_5604 +0.5 0.7 putative subtilisin-like serine protease compare
PP_2248 +0.5 3.3 putative transporter compare
PP_0128 +0.5 3.3 conserved protein of unknown function compare
PP_5473 +0.5 1.4 putative transcriptional regulator, LuxR family compare
PP_2223 +0.5 3.1 conserved protein of unknown function compare
PP_4359 +0.5 3.1 Flagellar protein FliL compare
PP_4040 +0.5 2.3 putative enzyme of the glyoxalase family compare
PP_1628 +0.5 1.9 NMN amidohydrolase compare
PP_2046 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_3013 +0.5 2.2 conserved protein of unknown function compare
PP_1473 +0.5 1.9 conserved protein of unknown function compare
PP_4337 +0.5 2.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4836 +0.5 1.5 conserved exported protein of unknown function compare
PP_2537 +0.5 2.3 conserved protein of unknown function compare
PP_2826 +0.5 2.3 Transcriptional regulator MexT compare
PP_3715 +0.5 2.0 Muconate cycloisomerase 1 compare
PP_5477 +0.5 1.9 conserved protein of unknown function compare
PP_5695 +0.5 2.8 conserved protein of unknown function compare
PP_4331 +0.5 2.2 conserved protein of unknown function compare
PP_0261 +0.5 2.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5028 +0.5 1.6 proline iminopeptidase compare
PP_1829 +0.5 1.4 Hydrolase, alpha/beta fold family compare
PP_4381 +0.5 3.9 Flagellar hook-associated protein FlgK compare
PP_3876 +0.5 1.4 conserved protein of unknown function compare
PP_1789 +0.5 2.4 Hydrolase, haloacid dehalogenase-like family compare
PP_2103 +0.5 2.0 conserved protein of unknown function compare
PP_1186 +0.5 0.9 two component system DNA-binding transcriptional dual regulator compare
PP_0750 +0.5 1.8 conserved protein of unknown function compare
PP_3447 +0.5 0.9 conserved membrane protein of unknown function compare
PP_3527 +0.5 3.3 Transcriptional regulator, TetR family compare
PP_0094 +0.4 2.5 5'-nucleotidase compare
PP_4361 +0.4 2.0 Flagellar hook-length control protein FliK compare
PP_2220 +0.4 1.3 C4-type zinc finger protein, DksA/TraR family compare
PP_3217 +0.4 2.5 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_2768 +0.4 1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3083 +0.4 2.4 putative Membrane protein compare
PP_4386 +0.4 2.8 flagellar basal-body rod protein FlgF compare
PP_0768 +0.4 2.3 Response regulator/TPR domain protein compare
PP_2500 +0.4 1.4 conserved protein of unknown function compare
PP_5725 +0.4 1.2 protein of unknown function compare
PP_1731 +0.4 1.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4344 +0.4 3.4 flagellar export pore protein compare
PP_2088 +0.4 1.8 RNA polymerase sigma factor SigX compare
PP_1513 +0.4 1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_3173 +0.4 1.8 N-ethylmaleimide reductase, FMN-linked compare
PP_5393 +0.4 0.9 putative metal-binding chaperone compare
PP_3449 +0.4 1.3 conserved exported protein of unknown function compare
PP_4178 +0.4 2.2 Dienelactone hydrolase family protein compare
PP_1926 +0.4 1.4 putative phosphotyrosine-protein phosphatase compare
PP_5137 +0.4 2.4 ferric iron ABC transporter, ATP-binding protein compare
PP_4109 +0.4 1.3 conserved protein of unknown function compare
PP_2441 +0.4 1.1 conserved protein of unknown function compare
PP_5345 +0.4 1.5 Acetyltransferase, GNAT family compare
PP_1727 +0.4 2.6 Transcriptional regulator, GntR family compare
PP_5144 +0.4 1.8 conserved protein of unknown function compare
PP_1225 +0.4 1.7 7-carboxy-7-deazaguanine synthase compare
PP_2724 +0.4 2.1 conserved protein of unknown function compare
PP_0422 +0.4 2.0 Indole-3-glycerol phosphate synthase compare
PP_0086 +0.4 0.9 conserved protein of unknown function compare
PP_1979 +0.4 1.4 putative Hydrolase compare
PP_4435 +0.4 1.8 conserved protein of unknown function compare
PP_4358 +0.4 2.6 flagellar synthesis, switching and energizing component compare
PP_2794 +0.4 1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0947 +0.4 1.7 conserved membrane protein of unknown function compare
PP_1774 +0.4 1.2 conserved exported protein of unknown function compare
PP_3792 +0.4 1.8 conserved protein of unknown function compare
PP_0405 +0.4 3.4 conserved protein of unknown function compare
PP_3235 +0.4 1.9 conserved protein of unknown function compare
PP_2067 +0.4 1.7 putative EmrB/QacA family drug resistance transporter compare
PP_2222 +0.4 1.5 conserved protein of unknown function compare
PP_2631 +0.4 0.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4258 +0.4 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_4726 +0.4 1.1 Chaperone protein DnaJ compare
PP_0254 +0.4 1.3 conserved protein of unknown function compare
PP_1238 +0.4 2.2 putative Lipoprotein compare
PP_5711 +0.4 1.8 protein of unknown function compare
PP_4054 +0.4 1.3 conserved protein of unknown function compare
PP_4380 +0.4 3.4 Flagellar hook-associated protein FlgL compare
PP_3121 +0.4 1.4 transcriptional regulator, LysR family compare
PP_4225 +0.4 2.1 two component system DNA-binding transcriptional activator QseB compare
PP_3307 +0.4 0.9 conserved protein of unknown function compare
PP_4371 +0.4 2.5 two component system AtoC DNA-binding transcriptional activator compare
PP_3744 +0.4 2.2 transcriptional dual regulator GlcC-Glycolate compare
PP_5469 +0.4 1.3 putative SAM-dependent methyltransferase compare
PP_0319 +0.4 0.7 conserved protein of unknown function compare
PP_4406 +0.4 1.0 conserved protein of unknown function compare
PP_4156 +0.4 1.4 Transcriptional regulator, LysR family compare
PP_2416 +0.4 1.2 putative Iron ABC transporter, ATP-binding protein compare
PP_4260 +0.4 2.2 conserved protein of unknown function compare
PP_1516 +0.4 1.7 RND membrane fusion protein compare
PP_3627 +0.4 1.6 conserved protein of unknown function compare
PP_5270 +0.4 2.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_3374 +0.4 1.7 conserved protein of unknown function compare
PP_4519 +0.4 2.9 Agglutination protein compare
PP_5513 +0.4 2.4 conserved protein of unknown function of phage origin compare
PP_2387 +0.4 0.7 conserved protein of unknown function compare
PP_0274 +0.4 1.0 putative transcriptional regulator containing HTH domain compare
PP_2580 +0.4 1.5 conserved protein of unknown function compare
PP_1912 +0.4 1.7 Phosphate acyltransferase compare
PP_0167 +0.4 3.3 Toxin secretion ATP-binding protein compare
PP_2857 +0.4 1.1 conserved exported protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For stress 3-methyl-3-butenol (commercial) in Pseudomonas putida KT2440

For stress 3-methyl-3-butenol (commercial) across organisms