Experiment set4IT022 for Pseudomonas putida KT2440

Compare to:

LB with Formaldehyde 0.03125 vol%

200 most important genes:

  gene name fitness t score description  
PP_1616 -4.4 -10.2 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4002 -3.9 -10.2 DNA-dependent ATPase required for recombination compare
PP_1629 -3.8 -6.3 Protein RecA compare
PP_4902 -3.4 -3.3 Oligoribonuclease compare
PP_5352 -3.4 -12.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4999 -3.4 -3.2 dihydroorotase-like protein compare
PP_1215 -3.2 -3.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4874 -3.0 -2.1 50S ribosomal protein L9 compare
PP_5329 -2.9 -4.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0123 -2.8 -8.5 DNA polymerase I, 5 compare
PP_5310 -2.7 -7.5 junction-specific ATP-dependent DNA helicase compare
PP_1615 -2.7 -9.6 Transcriptional regulator, LysR family compare
PP_4937 -2.7 -4.4 toluene tolerance protein compare
PP_4098 -2.6 -3.5 UvrABC system protein C compare
PP_1617 -2.6 -8.5 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_4099 -2.6 -21.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1733 -2.4 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1428 -2.4 -3.6 Sigma factor AlgU negative regulatory protein compare
PP_1216 -2.3 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5327 -2.3 -6.3 putative phosphate ABC transporter, permease subunit compare
PP_4004 -2.3 -4.7 DNA translocase FtsK compare
PP_4993 -2.2 -4.3 Glutathione synthetase compare
PP_1650 -2.2 -17.2 Sensor protein GacS compare
PP_4880 -2.1 -8.0 exoribonuclease R compare
PP_2000 -2.0 -3.5 amidophosphoribosyl transferase compare
PP_0164 -2.0 -6.1 conserved protein of unknown function compare
PP_2402 -1.8 -2.6 putative Sensor histidine kinase compare
PP_5328 -1.8 -3.7 putative phosphate transport system permease protein compare
PP_0168 -1.8 -14.3 putative surface adhesion protein compare
PP_4895 -1.7 -3.2 tRNA dimethylallyltransferase compare
PP_0166 -1.7 -10.9 HlyD family secretion protein compare
PP_0167 -1.7 -12.4 Toxin secretion ATP-binding protein compare
PP_4693 -1.7 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_2681 -1.7 -2.6 coenzyme PQQ synthesis protein D compare
PP_1217 -1.7 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5429 -1.7 -5.8 protein of unknown function compare
PP_4546 -1.7 -3.8 ATP-dependent helicase HrpA compare
PP_0003 -1.6 -3.9 16S RNA methyltransferase compare
PP_0165 -1.6 -11.4 GGDEF domain protein compare
PP_0888 -1.6 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_0685 -1.6 -3.1 conserved protein of unknown function compare
PP_0119 -1.5 -4.3 putative zinc uptake regulation protein ZUR compare
PP_4373 -1.5 -10.1 Transcriptional regulator FleQ compare
PP_4964 -1.5 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4723 -1.5 -7.8 Carbamoyl-phosphate synthase large chain compare
PP_4519 -1.5 -9.9 Agglutination protein compare
PP_3505 -1.5 -2.9 conserved protein of unknown function compare
PP_4724 -1.5 -3.9 Carbamoyl-phosphate synthase small chain compare
PP_1186 -1.5 -1.9 two component system DNA-binding transcriptional dual regulator compare
PP_0691 -1.5 -2.8 Glutamate 5-kinase compare
PP_4722 -1.4 -4.9 Transcription elongation factor GreA compare
PP_3637 -1.4 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1125 -1.4 -6.8 putative Helicase compare
PP_5717 -1.4 -3.0 conserved protein of unknown function compare
PP_1654 -1.3 -3.0 cysteine synthase B compare
PP_0120 -1.3 -4.8 putative zinc ABC transporter compare
PP_1871 -1.3 -4.0 Protease HtpX compare
PP_0672 -1.3 -8.4 Sensory box protein compare
PP_1994 -1.3 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_0832 -1.2 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4642 -1.2 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_5350 -1.2 -2.9 Transcriptional regulator, RpiR family compare
PP_0719 -1.2 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4639 -1.2 -6.6 P-loop guanosine triphosphatase-dependent zinc chaperone compare
PP_3098 -1.2 -1.2 conserved protein of unknown function compare
PP_5230 -1.2 -3.2 Tyrosine recombinase XerC compare
PP_5179 -1.1 -4.9 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_0340 -1.1 -6.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0214 -1.1 -5.4 4-aminobutyrate aminotransferase compare
PP_3730 -1.1 -2.2 Transcriptional regulatory protein AruR compare
PP_1468 -1.1 -1.8 Tyrosine recombinase XerD compare
PP_4342 -1.1 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_4787 -1.1 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0630 -1.1 -1.0 DNA gyrase inhibitor YacG compare
PP_0962 -1.1 -1.4 toluene-tolerance protein compare
PP_1656 -1.1 -4.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1702 -1.1 -3.2 Recombination-associated protein RdgC compare
PP_1268 -1.1 -2.2 putative HtrA suppressor protein sohA compare
PP_5100 -1.1 -3.1 dITP/XTP pyrophosphatase compare
PP_4199 -1.1 -1.1 putative Lipoprotein compare
PP_0833 -1.1 -1.5 queuine tRNA-ribosyltransferase compare
PP_0958 -1.1 -3.6 phospholipid ABC transporter ATP-binding subunit compare
PP_5146 -1.1 -4.8 RNA pyrophosphohydrolase compare
PP_5145 -1.1 -8.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0117 -1.0 -4.2 Zn(2+) ABC transporter - permease subunit compare
PP_5216 -1.0 -1.9 exopolyphosphatase compare
PP_2160 -1.0 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5008 -1.0 -1.2 Poly granule-associated protein compare
PP_5232 -1.0 -1.6 conserved protein of unknown function compare
PP_2197 -1.0 -2.9 conserved exported protein of unknown function compare
PP_1734 -1.0 -1.7 Probable septum site-determining protein MinC compare
PP_4129 -1.0 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0959 -1.0 -2.0 phospholipid ABC transporter compare
PP_2820 -1.0 -2.0 HTH-type transcriptional regulator nfxB compare
PP_0087 -1.0 -3.0 conserved exported protein of unknown function compare
PP_1655 -1.0 -2.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4729 -1.0 -4.9 factor used in recombination and DNA repair compare
PP_1319 -0.9 -4.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4296 -0.9 -1.6 conserved exported protein of unknown function compare
PP_5178 -0.9 -4.7 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_5338 -0.9 -1.8 aspartate ammonia-lyase compare
PP_3245 -0.9 -1.7 conserved protein of unknown function compare
PP_1728 -0.9 -4.8 conserved membrane protein of unknown function compare
PP_1322 -0.9 -1.4 putative Lipoprotein compare
PP_1204 -0.9 -3.1 putative Lipoprotein compare
PP_0960 -0.9 -2.5 phospholipid ABC transporter binding protein compare
PP_1678 -0.9 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1736 -0.9 -2.4 conserved protein of unknown function compare
PP_3434 -0.9 -1.4 conserved protein of unknown function compare
PP_5633 -0.9 -2.5 conserved protein of unknown function compare
PP_5177 -0.8 -3.1 spermidine/putrescine ABC transporter - permease subunit compare
PP_1979 -0.8 -2.2 putative Hydrolase compare
PP_0040 -0.8 -2.6 hypothetical protein compare
PP_5309 -0.8 -3.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2025 -0.8 -2.0 Exonuclease SbcD compare
PP_4263 -0.8 -3.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2442 -0.8 -1.2 conserved protein of unknown function, DUF480 family compare
PP_0118 -0.8 -4.8 zinc import ATP-binding protein compare
PP_4710 -0.8 -4.7 tRNA pseudouridine 55 synthase compare
PP_2144 -0.8 -2.5 Transcriptional regulator, TetR family compare
PP_4532 -0.8 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2978 -0.8 -2.4 conserved protein of unknown function compare
PP_4308 -0.8 -1.9 Transcriptional regulator, AsnC family compare
PP_5619 -0.8 -2.1 protein of unknown function compare
PP_0872 -0.8 -3.6 Peptide chain release factor 3 compare
PP_4265 -0.8 -2.6 DNA-binding transcriptional dual regulator compare
PP_0725 -0.8 -3.3 conserved hypothetical TPR repeat protein compare
PP_5331 -0.8 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_5143 -0.8 -1.7 conserved membrane protein of unknown function compare
PP_4264 -0.8 -4.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4836 -0.8 -2.2 conserved exported protein of unknown function compare
PP_2145 -0.8 -2.8 beta-N-acetylglucosaminidase compare
PP_5582 -0.8 -0.8 conserved protein of unknown function compare
PP_4124 -0.8 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_0276 -0.8 -0.9 Transcriptional regulator, Cro/CI family compare
PP_5483 -0.8 -1.4 conserved protein of unknown function compare
PP_t49 -0.8 -2.1 tRNA-Met compare
PP_2459 -0.8 -1.3 ribose pyranase compare
PP_2624 -0.7 -2.5 conserved protein of unknown function compare
PP_2773 -0.7 -0.8 conserved protein of unknown function compare
PP_3409 -0.7 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_5600 -0.7 -2.0 conserved protein of unknown function compare
PP_5702 -0.7 -2.7 conserved protein of unknown function compare
PP_1833 -0.7 -2.6 conserved protein of unknown function compare
PP_5181 -0.7 -5.1 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_4739 -0.7 -2.3 conserved protein of unknown function compare
PP_4328 -0.7 -2.8 conserved protein of unknown function compare
PP_5303 -0.7 -2.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0345 -0.7 -2.2 putative Heptose kinase WapP compare
PP_0775 -0.7 -1.2 conserved protein of unknown function compare
PP_5537 -0.7 -2.3 conserved membrane protein of unknown function compare
PP_5648 -0.7 -2.0 conserved exported protein of unknown function compare
PP_4826 -0.7 -3.6 Precorrin-3B C17-methyltransferase compare
PP_2163 -0.7 -2.6 VacJ lipoprotein compare
PP_1114 -0.7 -2.4 SEC-C domain protein compare
PP_5525 -0.7 -2.1 conserved exported protein of unknown function compare
PP_t10 -0.7 -1.1 tRNA-Pro compare
PP_3295 -0.7 -2.4 YeeE/YedE family protein compare
PP_5430 -0.7 -1.6 protein of unknown function compare
PP_3930 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4830 -0.7 -3.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_1672 -0.7 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4213 -0.7 -2.1 putative dipeptidase compare
PP_2337 -0.7 -1.3 aconitate isomerase compare
PP_3946 -0.7 -0.7 HTH-type transcriptional repressor NicR compare
PP_0963 -0.7 -1.8 putative BolA family protein compare
PP_0961 -0.7 -2.9 toluene tolerance protein compare
PP_0794 -0.7 -2.8 1-phosphofructokinase monomer compare
PP_0891 -0.7 -1.9 conserved exported protein of unknown function compare
PP_3105 -0.7 -0.9 conserved membrane protein of unknown function compare
PP_5610 -0.7 -1.3 protein of unknown function compare
PP_3506 -0.7 -2.0 Magnesium chelatase, subunit ChII compare
PP_5202 -0.7 -1.0 putative cell division protein compare
PP_3328 -0.7 -0.8 putative Ring-cleaving dioxygenase compare
PP_4570 -0.7 -4.4 conserved protein of unknown function compare
PP_2932 -0.6 -3.0 Amidase family protein compare
PP_t11 -0.6 -1.6 tRNA-Lys compare
PP_5505 -0.6 -0.9 conserved transmembrane protein of unknown function compare
PP_4009 -0.6 -2.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_2791 -0.6 -2.9 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_2181 -0.6 -2.2 Transcriptional regulator, Cro/CI family compare
PP_0512 -0.6 -1.4 hypothetical protein compare
PP_3286 -0.6 -2.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0610 -0.6 -2.0 conserved exported protein of unknown function compare
PP_4247 -0.6 -0.7 Exonuclease compare
PP_0126 -0.6 -1.9 Cytochrome c4 compare
PP_0274 -0.6 -0.8 putative transcriptional regulator containing HTH domain compare
PP_2970 -0.6 -1.9 conserved exported protein of unknown function compare
PP_1226 -0.6 -2.3 pre-queuosine 0 synthase compare
PP_1269 -0.6 -0.8 Universal stress protein family compare
PP_5478 -0.6 -2.4 conserved protein of unknown function compare
PP_5SB -0.6 -1.3 5S ribosomal RNA compare
PP_3180 -0.6 -3.3 Smp-30/Cgr1 family protein compare
PP_3715 -0.6 -2.0 Muconate cycloisomerase 1 compare
PP_4006 -0.6 -3.8 Putative arginyl-tRNA--protein transferase compare
PP_2568 -0.6 -0.8 Ring-cleaving dioxygenase compare
PP_4198 -0.6 -2.6 OmpA family protein compare
PP_1677 -0.6 -1.8 Adenosyl-cobyric acid synthase compare
PP_1381 -0.6 -0.9 4-carboxymuconolactone decarboxylase compare
PP_3748 -0.6 -1.9 conserved hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Formaldehyde in Pseudomonas putida KT2440

For stress Formaldehyde across organisms