Experiment set4IT022 for Agrobacterium fabrum C58

Compare to:

R2A with sodium fluoride 0.2 mM

200 most important genes:

  gene name fitness t score description  
Atu0400 -2.5 -4.5 orotate phosphoribosyltransferase compare
Atu3120 -2.5 -1.8 hypothetical protein compare
Atu0017 -2.4 -2.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu5430 -2.4 -1.9 hypothetical protein compare
Atu1308 -2.4 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -2.3 -11.2 anthranilate synthase component I and II compare
Atu1307 -2.3 -4.9 dihydroorotase compare
Atu3469 -2.3 -3.1 phosphoglyceromutase compare
Atu1687 -2.3 -5.9 anthranilate phosphoribosyltransferase compare
Atu1446 -2.2 -3.8 two component response regulator compare
Atu2684 -2.2 -1.8 hypothetical protein compare
Atu3468 -2.1 -1.6 hypothetical protein compare
Atu0777 -2.1 -1.3 hypothetical protein compare
Atu0346 -2.0 -2.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1688 -2.0 -4.3 indole-3-glycerol-phosphate synthase compare
Atu0184 -2.0 -2.8 glucokinase compare
Atu0399 -1.8 -4.9 dihydroorotase compare
Atu0486 -1.7 -5.3 dihydroorotate dehydrogenase compare
Atu0434 -1.7 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2710 -1.7 -7.5 hypothetical protein compare
Atu3750 -1.7 -2.8 thiamine-phosphate pyrophosphorylase compare
Atu3707 -1.6 -3.2 phosphoserine aminotransferase compare
Atu1030 -1.6 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2439 -1.6 -1.6 hypothetical protein compare
Atu2793 -1.5 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu4616 -1.5 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu1028 -1.5 -3.3 hypothetical protein compare
Atu0298 -1.5 -6.0 orotidine 5 compare
Atu0972 -1.4 -6.3 lipA protein compare
Atu0103 -1.4 -7.6 penicillin-binding protein compare
Atu1470 -1.4 -1.5 Camphor resistance protein compare
Atu1686 -1.4 -7.8 peptidyl-prolyl cis-trans isomerse D compare
Atu0421 -1.4 -1.6 ABC transporter, membrane spanning protein compare
Atu0723 -1.4 -2.4 FAD dependent oxidoreductase compare
Atu0040 -1.3 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3754 -1.3 -6.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu2207 -1.2 -2.8 two component sensor kinase compare
Atu2798 -1.2 -3.8 precorrin-6y methyltransferase compare
Atu0185 -1.2 -3.8 methylglyoxal synthase compare
Atu3496 -1.2 -2.0 hypothetical protein compare
Atu6114 -1.2 -1.1 hypothetical protein compare
Atu1850 -1.2 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4317 -1.2 -1.4 TetR family transcriptional regulator compare
Atu2067 -1.2 -1.3 hypothetical protein compare
Atu1774 -1.1 -5.4 ABC transporter, substrate binding protein (peptide) compare
Atu3486 -1.1 -3.2 DeoR family transcriptional regulator compare
Atu0769 -1.1 -1.7 protoheme IX farnesyltransferase compare
Atu8168 -1.1 -1.8 hypothetical protein compare
Atu6045 -1.1 -1.4 replication protein C compare
Atu5164 -1.1 -0.8 type IV secretion protein AvhB3 compare
Atu0190 -1.0 -5.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2796 -1.0 -2.6 precorrin-4 C11-methyltransferase compare
Atu0977 -1.0 -3.5 serine protease DO-like protease compare
Atu2802 -1.0 -5.3 precorrin-8X methylmutase compare
Atu2728 -1.0 -3.6 beta (1-->2) glucan export ATP-binding protein compare
Atu1163 -1.0 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3510 -1.0 -2.1 amidohydrolase compare
Atu0041 -1.0 -1.3 glutamine amidotransferase compare
Atu4075 -1.0 -4.7 glycogen synthase compare
Atu2368 -0.9 -0.9 hypothetical protein compare
Atu1844 -0.9 -2.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2640 -0.9 -3.0 hypothetical protein compare
Atu3706 -0.9 -5.0 D-3-phosphoglycerate dehydrogenase compare
Atu1140 -0.9 -2.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3634 -0.9 -2.7 penicillin-binding protein dacf precursor compare
Atu3579 -0.9 -2.7 lactoylglutathione lyase compare
Atu3727 -0.9 -2.1 hypothetical protein compare
Atu1469 -0.9 -2.4 hypothetical protein compare
Atu2807 -0.9 -3.4 cob(I)alamin adenosyltransferase compare
Atu5485 -0.8 -1.7 hypothetical protein compare
Atu0971 -0.8 -2.8 two component sensor kinase compare
Atu4618 -0.8 -5.1 dTDP-rhamnose-3,5-epimerase compare
Atu1845 -0.8 -3.1 phosphoribosylformylglycinamidine synthase I compare
Atu8054 -0.8 -0.5 hypothetical protein compare
Atu0189 -0.8 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2125 -0.8 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3755 -0.8 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1141 -0.8 -4.0 Phosphoribosylglycinamide synthetase compare
Atu0598 -0.8 -5.0 phosphogluconate dehydratase compare
Atu3759 -0.8 -1.3 hypothetical protein compare
Atu2805 -0.8 -3.2 cobalamin synthesis protein compare
Atu8052 -0.8 -0.9 hypothetical protein compare
Atu0188 -0.8 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4882 -0.8 -1.9 hypothetical protein compare
Atu4166 -0.8 -1.4 UDP-glucose 4-epimerase compare
Atu1542 -0.8 -3.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0824 -0.8 -1.0 hypothetical protein compare
Atu1075 -0.8 -4.3 amidophosphoribosyltransferase compare
Atu1891 -0.8 -2.8 cobalamin biosynthesis protein compare
Atu4890 -0.8 -1.2 IS426 transposase compare
Atu4173 -0.8 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu2464 -0.8 -2.0 formyltetrahydrofolate deformylase compare
Atu4589 -0.8 -1.3 transmembrane transport protein compare
Atu1588 -0.8 -3.5 homoserine dehydrogenase compare
Atu0647 -0.8 -2.9 phosphoribosylamine--glycine ligase compare
Atu4108 -0.7 -3.2 ribonuclease D compare
Atu4864 -0.7 -2.6 MarR family transcriptional regulator compare
Atu5125 -0.7 -2.2 GntR family transcriptional regulator compare
Atu2052 -0.7 -3.7 hypothetical protein compare
Atu0026 -0.7 -0.8 hypothetical protein compare
Atu0925 -0.7 -1.4 hypothetical protein compare
Atu5145 -0.7 -1.7 acetyltransferase compare
Atu2808 -0.7 -3.6 cobyric acid synthase compare
Atu1739 -0.7 -2.3 permease compare
Atu2650 -0.7 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu4897 -0.7 -1.5 hypothetical protein compare
Atu1836 -0.7 -1.2 hypothetical protein compare
Atu5493 -0.7 -1.6 hypothetical protein compare
Atu1364 -0.7 -2.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2804 -0.7 -3.6 cobaltochelatase subunit compare
Atu4852 -0.7 -3.3 hypothetical protein compare
Atu3763 -0.6 -1.5 hypothetical protein compare
Atu1628 -0.6 -1.2 hypothetical protein compare
Atu0976 -0.6 -1.2 cycL protein compare
Atu4884 -0.6 -1.7 hypothetical protein compare
Atu2809 -0.6 -3.6 cobalamin biosynthesis protein compare
Atu2795 -0.6 -2.9 cobalamin biosynthetic protein compare
Atu8087 -0.6 -0.8 putative peptidoglycan binding protein compare
Atu3126 -0.6 -2.0 hypothetical protein compare
Atu3001 -0.6 -1.8 hypothetical protein compare
Atu4686 -0.6 -1.7 hypothetical protein compare
Atu0876 -0.6 -0.6 superoxide dismutase compare
Atu1185 -0.6 -2.1 hypothetical protein compare
Atu5130 -0.6 -2.2 attachment protein compare
Atu1110 -0.6 -1.6 cytosol aminopeptidase compare
Atu3730 -0.6 -0.9 hypothetical protein compare
Atu0941 -0.6 -0.6 hypothetical protein compare
Atu0029 -0.6 -2.8 S-adenosylhomocysteine hydrolase compare
Atu3067 -0.6 -2.8 hypothetical protein compare
Atu4588 -0.6 -1.8 sodium bile acid symporter family protein compare
Atu4866 -0.6 -3.4 hypothetical protein compare
Atu3031 -0.6 -0.9 hypothetical protein compare
Atu3864 -0.6 -1.8 hypothetical protein compare
Atu6189 -0.6 -0.6 protein secretion chaperone compare
Atu0894 -0.6 -1.4 ABC transporter, membrane spanning protein compare
Atu4889 -0.6 -3.1 hypothetical protein compare
Atu3798 -0.6 -3.1 TetR family transcriptional regulator compare
Atu4567 -0.6 -3.1 ROK family transcriptional regulator compare
Atu1124 -0.6 -1.7 hypothetical protein compare
Atu3598 -0.6 -0.9 thiol:disulfide interchange protein compare
Atu0036 -0.6 -0.9 hypothetical protein compare
Atu5540 -0.6 -0.5 hypothetical protein compare
Atu8183 -0.6 -2.6 hypothetical protein compare
Atu0469 -0.6 -2.5 hypothetical protein compare
Atu2343 -0.5 -1.7 acetyltransferase compare
Atu0479 -0.5 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu3667 -0.5 -2.1 aspartate alpha-decarboxylase compare
Atu2382 -0.5 -1.7 hypothetical protein compare
Atu4878 -0.5 -1.4 hypothetical protein compare
Atu0726 -0.5 -2.3 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2677 -0.5 -1.8 protein tyrosine phosphatase compare
Atu2040 -0.5 -2.1 phosphoserine phosphatase compare
Atu1644 -0.5 -1.4 hypothetical protein compare
Atu4773 -0.5 -0.6 two component response regulator compare
Atu2113 -0.5 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu4845 -0.5 -3.6 sugar ABC transporter permease compare
Atu6195 -0.5 -1.6 conserved hypothetical protein compare
Atu2238 -0.5 -2.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3593 -0.5 -2.8 hypothetical protein compare
Atu2797 -0.5 -1.6 cobalamin biosynthesis protein compare
Atu8190 -0.5 -2.8 hypothetical protein compare
Atu4072 -0.5 -1.2 nodulation protein N compare
Atu2801 -0.5 -1.5 precorrin-2 C20 methyltransferase compare
Atu3482 -0.5 -2.2 pantoate--beta-alanine ligase compare
Atu4214 -0.5 -2.2 cold shock protein compare
Atu6153 -0.5 -1.9 conserved hypothetical protein compare
Atu2532 -0.5 -1.9 transcriptional regulator, MarR family compare
Atu2036 -0.5 -4.0 acetolactate synthase III, large subunit compare
Atu0923 -0.5 -2.1 hypothetical protein compare
Atu1619 -0.5 -1.4 protein-export membrane protein SECG compare
Atu2662 -0.5 -0.9 acetyltransferase compare
Atu3034 -0.5 -2.7 ROK family transcriptional regulator compare
Atu3353 -0.5 -3.7 mannose-1-phosphate guanylyltransferase compare
Atu5501 -0.5 -0.7 hypothetical protein compare
Atu4527 -0.5 -0.9 hypothetical protein compare
Atu1023 -0.5 -1.0 hypothetical protein compare
Atu3668 -0.5 -1.5 siderophore biosynthesis protein compare
Atu2193 -0.5 -0.6 hypothetical protein compare
Atu2803 -0.5 -1.9 Cobalamin biosynthesis associated protein compare
Atu2208 -0.5 -1.7 secretion chaperone compare
Atu4837 -0.5 -2.4 hypothetical protein compare
Atu3697 -0.5 -2.3 ATP-dependent protease LA 2 compare
Atu1314 -0.5 -2.3 transcriptional regulator, TetR family compare
Atu3773 -0.5 -1.4 hypothetical protein compare
Atu3023 -0.5 -2.9 sugar ABC transporter permease compare
Atu0997 -0.5 -1.7 hypothetical protein compare
Atu4869 -0.5 -1.4 hypothetical protein compare
Atu4868 -0.5 -3.2 oxidoreductase compare
Atu3032 -0.5 -1.2 hypothetical protein compare
Atu2799 -0.5 -1.2 precorrin-6x reductase compare
Atu4892 -0.5 -3.5 hypothetical protein compare
Atu0490 -0.5 -2.7 hypothetical protein compare
Atu1685 -0.5 -0.5 hypothetical protein compare
Atu5426 -0.5 -1.7 hypothetical protein compare
Atu0846 -0.5 -2.0 transcriptional regulator, MarR family compare
Atu2800 -0.5 -1.7 precorrin-3B C17-methyltransferase compare
Atu0767 -0.5 -2.6 cytochrome c oxidase subunit II compare
Atu5157 -0.5 -0.9 hypothetical protein compare
Atu3107 -0.5 -2.9 LacI family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress sodium fluoride across organisms