Experiment set4IT016 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Dimethyl Sulfoxide 1.25 vol%

200 most detrimental genes:

  gene name fitness t score description  
Psyr_4745 +2.1 2.6 hypothetical protein compare
Psyr_1876 +1.4 2.3 conserved hypothetical protein compare
Psyr_3623 +1.4 1.7 Protein of unknown function DUF1127 compare
Psyr_2069 +1.4 2.7 conserved hypothetical protein compare
Psyr_3143 +1.3 3.1 general secretion pathway protein M, putative compare
Psyr_2067 +1.3 3.4 ABC transporter compare
Psyr_4593 +1.3 2.1 sigma factor domain protein compare
Psyr_1036 +1.2 2.5 conserved hypothetical protein compare
Psyr_2588 +1.1 3.0 HpcH/HpaI aldolase compare
Psyr_4181 +1.0 1.7 Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication compare
Psyr_2064 +1.0 3.0 conserved hypothetical protein compare
Psyr_4818 +0.9 1.4 chorismate mutase compare
Psyr_2202 +0.9 2.3 ABC transporter compare
Psyr_0838 +0.9 2.5 Rieske [2Fe-2S] region compare
Psyr_1202 +0.9 1.5 negative regulator of hrp expression HrpV compare
Psyr_3315 +0.9 2.6 conserved hypothetical protein compare
Psyr_4487 +0.8 3.0 Carbohydrate kinase, PfkB compare
Psyr_1871 +0.8 2.3 Transglutaminase-like protein compare
Psyr_4482 +0.8 1.4 outer membrane transport energization protein ExbD compare
Psyr_1317 +0.8 3.0 conserved hypothetical protein compare
Psyr_3083 +0.8 2.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0580 +0.8 1.9 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_4028 +0.8 2.0 lipoprotein, putative compare
Psyr_3519 +0.8 4.1 hypothetical protein compare
Psyr_1973 +0.8 1.3 Aspartate transaminase compare
Psyr_4299 +0.8 1.4 transcriptional regulator, AsnC family compare
Psyr_3727 +0.7 2.7 conserved hypothetical protein compare
Psyr_0179 +0.7 1.4 Protein of unknown function DUF1289 compare
Psyr_4443 +0.7 1.1 hypothetical protein compare
Psyr_3692 +0.7 2.7 conserved hypothetical protein compare
Psyr_3510 +0.7 2.0 conserved hypothetical protein compare
Psyr_2149 +0.7 1.5 conserved hypothetical protein compare
Psyr_0299 +0.7 3.1 transcriptional regulator, GntR family compare
Psyr_2900 +0.7 2.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_0699 +0.7 1.2 CDS compare
Psyr_4583 +0.7 3.3 Glycoside hydrolase, family 19 compare
Psyr_3947 +0.7 1.2 Methyltransferase, putative compare
Psyr_3826 +0.7 1.8 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_4450 +0.6 2.5 transcriptional regulator, TetR family compare
Psyr_2548 +0.6 1.3 hypothetical protein compare
Psyr_3210 +0.6 3.1 Protein of unknown function UPF0118 compare
Psyr_4506 +0.6 4.1 Glycerophosphodiester phosphodiesterase compare
Psyr_4920 +0.6 1.5 conserved hypothetical bacteriophage protein compare
Psyr_2081 +0.6 2.6 conserved hypothetical protein compare
Psyr_3432 +0.6 2.3 MotA/TolQ/ExbB proton channel compare
Psyr_1630 +0.6 0.7 ABC transporter compare
Psyr_1891 +0.6 2.3 hypothetical protein compare
Psyr_3723 +0.6 0.9 CDS compare
Psyr_2982 +0.6 2.3 conserved hypothetical protein compare
Psyr_1829 +0.6 1.8 conserved hypothetical protein compare
Psyr_5017 +0.6 2.6 NAD(P) transhydrogenase subunit alpha compare
Psyr_3462 +0.6 1.5 conserved hypothetical protein compare
Psyr_4160 +0.6 2.6 Maf-like protein compare
Psyr_3350 +0.6 1.3 Allergen V5/Tpx-1 related protein compare
Psyr_3162 +0.6 1.7 Metalloprotease inhibitor/calysin compare
Psyr_1337 +0.6 1.9 Conserved hypothetical protein ArsC related protein compare
Psyr_4003 +0.6 1.8 conserved hypothetical protein compare
Psyr_2514 +0.6 1.2 ABC transporter compare
Psyr_4772 +0.6 2.1 Protein of unknown function DUF519 compare
Psyr_3501 +0.6 3.0 General substrate transporter:Major facilitator superfamily compare
Psyr_1721 +0.6 2.3 moxR protein, putative compare
Psyr_1895 +0.6 1.6 conserved hypothetical protein compare
Psyr_2719 +0.6 0.9 transcriptional regulator, TetR family compare
Psyr_3225 +0.6 3.7 Protein-tyrosine kinase compare
Psyr_4571 +0.6 3.1 Protein of unknown function DUF805 compare
Psyr_3263 +0.6 3.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_0548 +0.6 2.0 Protein of unknown function DUF1249 compare
Psyr_4474 +0.6 1.6 hypothetical protein compare
Psyr_3590 +0.6 1.8 conserved hypothetical protein compare
Psyr_4942 +0.6 2.3 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_2476 +0.6 1.4 Exodeoxyribonuclease III compare
Psyr_4604 +0.6 1.0 hypothetical protein compare
Psyr_3032 +0.6 3.0 lipoprotein, putative compare
Psyr_1528 +0.6 1.4 Arc-like DNA binding protein compare
Psyr_4572 +0.6 4.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_2048 +0.6 2.0 Haloacid dehalogenase-like hydrolase:E1-E2 ATPase-associated region compare
Psyr_2956 +0.5 2.2 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2442 +0.5 2.3 precorrin-6A synthase (deacetylating) compare
Psyr_2532 +0.5 2.3 transcriptional regulator, LysR family compare
Psyr_0167 +0.5 1.7 hypothetical protein compare
Psyr_RNA63 +0.5 0.9 tRNA-Met compare
Psyr_4055 +0.5 1.0 conserved domain protein compare
Psyr_3166 +0.5 2.3 ABC transporter, periplasmic substrate-binding protein, putative compare
Psyr_1357 +0.5 1.7 RNase HII compare
Psyr_2028 +0.5 1.5 conserved hypothetical protein compare
Psyr_2276 +0.5 2.0 glutamate synthase (NADPH) GltB2 subunit compare
Psyr_4797 +0.5 1.4 Protein of unknown function DUF1090 compare
Psyr_3267 +0.5 2.4 AP endonuclease, family 2 compare
Psyr_0348 +0.5 1.2 conserved hypothetical protein compare
Psyr_3782 +0.5 2.4 CsbD-like protein compare
Psyr_4786 +0.5 1.9 hypothetical protein compare
Psyr_3232 +0.5 3.1 Polysaccharide export protein compare
Psyr_2695 +0.5 1.2 conserved hypothetical protein compare
Psyr_4478 +0.5 2.5 Alpha/beta hydrolase fold protein compare
Psyr_2434 +0.5 1.2 Carbohydrate kinase, PfkB compare
Psyr_4048 +0.5 2.2 ornithine-acyl[acyl carrier protein] N-acyltransferase compare
Psyr_0635 +0.5 1.6 MaoC-like dehydratase compare
Psyr_4451 +0.5 1.3 UreE urease accessory, N-terminal:UreE urease accessory, C-terminal compare
Psyr_4200 +0.5 2.5 Protein of unknown function UPF0125 compare
Psyr_2093 +0.5 2.0 Mg2+ transporter protein, CorA-like protein compare
Psyr_5064 +0.5 1.6 transcriptional regulator, RpiR family compare
Psyr_2074 +0.5 2.5 ketopantoate reductase compare
Psyr_3284 +0.5 1.5 SOS cell division inhibitor SulA compare
Psyr_3879 +0.5 1.7 hypothetical protein compare
Psyr_3221 +0.5 2.2 DegT/DnrJ/EryC1/StrS aminotransferase compare
Psyr_4501 +0.5 2.6 transcriptional regulator, MarR family compare
Psyr_3236 +0.5 1.7 transcriptional regulator, LysR family compare
Psyr_3234 +0.5 2.8 Lysine exporter protein (LYSE/YGGA) compare
Psyr_2100 +0.5 2.6 assimilatory nitrate reductase (NADH) beta subunit compare
Psyr_1395 +0.5 3.3 virulence compare
Psyr_0344 +0.5 2.0 Secretion protein HlyD compare
Psyr_1879 +0.5 0.8 conserved hypothetical protein compare
Psyr_1855 +0.5 1.1 methylthioribulose-1-phosphate dehydratase compare
Psyr_2236 +0.5 2.6 Protein of unknown function DUF1206 compare
Psyr_3789 +0.5 2.6 lipoprotein, putative compare
Psyr_0214 +0.5 1.2 conserved hypothetical protein compare
Psyr_2408 +0.5 2.5 3-oxoadipate enol-lactonase compare
Psyr_4576 +0.5 1.7 OsmC-like protein compare
Psyr_2507 +0.5 2.2 Endoribonuclease L-PSP compare
Psyr_2132 +0.5 2.2 shikimate dehydrogenase compare
Psyr_1598 +0.5 2.2 diguanylate cyclase/phosphodiesterase compare
Psyr_1127 +0.5 1.1 Heavy metal response regulator compare
Psyr_4503 +0.5 3.3 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
Psyr_3160 +0.5 2.7 Type I secretion membrane fusion protein, HlyD compare
Psyr_1325 +0.5 1.6 Protein of unknown function DUF548 compare
Psyr_4856 +0.5 1.2 conserved hypothetical protein compare
Psyr_0316 +0.5 1.2 conserved hypothetical protein compare
Psyr_2098 +0.5 2.1 uroporphyrinogen-III C-methyltransferase compare
Psyr_4588 +0.5 1.6 Phage GP46 compare
Psyr_2531 +0.5 1.2 transcriptional regulator, LysR family compare
Psyr_1207 +0.5 1.6 type III secretion protein HrcS compare
Psyr_3995 +0.5 1.7 Helix-turn-helix, Fis-type compare
Psyr_2748 +0.5 2.3 FAD dependent oxidoreductase compare
Psyr_3212 +0.5 2.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1306 +0.5 0.9 CheW-like protein compare
Psyr_0199 +0.5 1.8 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_3255 +0.5 2.3 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_0812 +0.5 1.8 stress protein compare
Psyr_0087 +0.5 2.0 Fatty acid desaturase compare
Psyr_2537 +0.5 1.4 conserved hypothetical protein compare
Psyr_4594 +0.5 2.5 conserved hypothetical protein compare
Psyr_3657 +0.5 1.3 DSBA oxidoreductase compare
Psyr_4114 +0.5 1.8 Protein of unknown function UPF0102 compare
Psyr_3224 +0.5 1.9 Low molecular weight phosphotyrosine protein phosphatase compare
Psyr_2605 +0.5 1.4 transposase, putative compare
Psyr_4116 +0.5 1.3 Transport-associated protein compare
Psyr_0283 +0.5 1.9 NLPA lipoprotein compare
Psyr_0746 +0.5 2.1 IS66 Orf2 like protein compare
Psyr_2765 +0.5 1.0 conserved domain protein compare
Psyr_3459 +0.5 1.6 Helix-turn-helix, Fis-type compare
Psyr_4999 +0.5 2.3 hypothetical protein compare
Psyr_3165 +0.4 2.5 transcriptional regulator, LysR family compare
Psyr_2210 +0.4 1.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_1061 +0.4 1.9 alginate biosynthesis protein Alg44 compare
Psyr_1859 +0.4 1.6 conserved hypothetical protein compare
Psyr_2014 +0.4 1.2 conserved hypothetical protein compare
Psyr_4833 +0.4 1.8 histidine ammonia-lyase compare
Psyr_2680 +0.4 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3926 +0.4 1.7 transcriptional regulator, PadR family compare
Psyr_3466 +0.4 1.4 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_2054 +0.4 1.9 Protein of unknown function DUF58 compare
Psyr_4411 +0.4 2.8 conserved hypothetical protein compare
Psyr_2699 +0.4 1.8 conserved hypothetical protein compare
Psyr_2441 +0.4 1.9 transcriptional regulator, AraC family compare
Psyr_1683 +0.4 2.5 conserved hypothetical protein compare
Psyr_2475 +0.4 2.5 phosphate ABC transporter substrate-binding protein, PhoT family compare
Psyr_4614 +0.4 3.0 extracellular solute-binding protein, family 1 compare
Psyr_1850 +0.4 1.5 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_0477 +0.4 2.3 Protein of unknown function UPF0001 compare
Psyr_4682 +0.4 0.6 conserved hypothetical protein compare
Psyr_1851 +0.4 2.5 conserved hypothetical protein compare
Psyr_3887 +0.4 1.7 Electron transport complex, RnfABCDGE type, B subunit compare
Psyr_2398 +0.4 1.2 ABC transporter compare
Psyr_0765 +0.4 1.2 conserved hypothetical protein compare
Psyr_5014 +0.4 2.3 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal compare
Psyr_0390 +0.4 0.9 conserved hypothetical protein compare
Psyr_2969 +0.4 1.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2213 +0.4 1.6 transcriptional regulator, AraC family compare
Psyr_1187 +0.4 1.1 type III chaperone protein ShcE compare
Psyr_3579 +0.4 0.8 Class I peptide chain release factor compare
Psyr_2583 +0.4 1.5 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1797 +0.4 1.9 conserved hypothetical protein compare
Psyr_4006 +0.4 2.4 transcriptional regulator, TetR family compare
Psyr_3604 +0.4 1.2 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_3397 +0.4 1.6 transcriptional regulator, LysR family compare
Psyr_3973 +0.4 1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4498 +0.4 1.4 outer membrane transport energization protein ExbD compare
Psyr_0670 +0.4 1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_0618 +0.4 2.4 conserved hypothetical protein compare
Psyr_3518 +0.4 1.5 hypothetical protein compare
Psyr_2822 +0.4 1.0 hypothetical protein compare
Psyr_2635 +0.4 2.3 conserved hypothetical protein compare
Psyr_3196 +0.4 2.3 isocitrate lyase compare
Psyr_0609 +0.4 2.3 Glutathione S-transferase, C-terminal compare
Psyr_0440 +0.4 1.9 Cobyrinic acid a,c-diamide synthase compare
Psyr_0362 +0.4 1.3 Sigma-70 region 2 compare
Psyr_3706 +0.4 1.6 Protein of unknown function DUF335 compare
Psyr_0295 +0.4 0.9 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3946 +0.4 1.3 Proteobacterial methyltransferase compare
Psyr_2317 +0.4 1.0 CDS compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Dimethyl Sulfoxide across organisms