Experiment set4IT014 for Agrobacterium fabrum C58

Compare to:

R2A with copper (II) chloride dihydrate 0.04 mM

200 most important genes:

  gene name fitness t score description  
Atu0041 -4.6 -3.1 glutamine amidotransferase compare
Atu0039 -3.8 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu0040 -3.0 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1359 -2.7 -1.7 dnaK deletion suppressor protein compare
Atu0038 -2.7 -5.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -2.5 -4.7 anthranilate phosphoribosyltransferase compare
Atu1750 -2.5 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -2.3 -6.7 histidinol dehydrogenase compare
Atu0017 -2.3 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0043 -2.2 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu4053 -2.2 -2.3 succinoglycan biosynthesis protein compare
Atu1688 -2.2 -5.2 indole-3-glycerol-phosphate synthase compare
Atu0400 -2.2 -4.4 orotate phosphoribosyltransferase compare
Atu1308 -2.1 -5.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0399 -2.1 -6.0 dihydroorotase compare
Atu2289 -2.1 -9.4 anthranilate synthase component I and II compare
Atu0184 -2.0 -2.7 glucokinase compare
Atu0486 -2.0 -4.4 dihydroorotate dehydrogenase compare
Atu2193 -2.0 -1.6 hypothetical protein compare
Atu0298 -1.9 -4.9 orotidine 5 compare
Atu1307 -1.9 -4.4 dihydroorotase compare
Atu0679 -1.9 -5.2 ATP phosphoribosyltransferase compare
Atu1030 -1.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3885 -1.8 -5.0 inositol monophosphatase compare
Atu0103 -1.7 -7.5 penicillin-binding protein compare
Atu0346 -1.7 -4.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4144 -1.7 -1.7 hypothetical protein compare
Atu2710 -1.6 -6.8 hypothetical protein compare
Atu0434 -1.6 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0678 -1.6 -5.0 histidyl-tRNA synthetase compare
Atu4317 -1.5 -1.5 TetR family transcriptional regulator compare
Atu0723 -1.5 -2.2 FAD dependent oxidoreductase compare
Atu1845 -1.5 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu2684 -1.5 -1.6 hypothetical protein compare
Atu2067 -1.5 -1.5 hypothetical protein compare
Atu4161 -1.5 -1.9 hypothetical protein compare
Atu1446 -1.4 -2.4 two component response regulator compare
Atu1075 -1.4 -5.3 amidophosphoribosyltransferase compare
Atu1163 -1.4 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1844 -1.4 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2803 -1.3 -4.2 Cobalamin biosynthesis associated protein compare
Atu0972 -1.3 -4.1 lipA protein compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu3763 -1.3 -1.6 hypothetical protein compare
Atu3727 -1.2 -3.2 hypothetical protein compare
Atu1891 -1.2 -2.3 cobalamin biosynthesis protein compare
Atu1686 -1.2 -6.4 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -1.2 -1.9 phosphoglyceromutase compare
Atu3353 -1.2 -7.8 mannose-1-phosphate guanylyltransferase compare
Atu2207 -1.1 -3.8 two component sensor kinase compare
Atu2113 -1.1 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu0598 -1.1 -5.3 phosphogluconate dehydratase compare
Atu0190 -1.1 -5.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4616 -1.1 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu0977 -1.1 -2.9 serine protease DO-like protease compare
Atu3755 -1.1 -3.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2692 -1.1 -2.4 intracellular septation protein compare
Atu4854 -1.1 -4.7 hypothetical protein compare
Atu1874 -1.1 -2.2 RecA protein compare
Atu0953 -1.0 -1.4 hypothetical protein compare
Atu1774 -1.0 -5.0 ABC transporter, substrate binding protein (peptide) compare
Atu3999 -1.0 -2.2 dithiobiotin synthetase compare
Atu1028 -1.0 -2.6 hypothetical protein compare
Atu2640 -1.0 -2.9 hypothetical protein compare
Atu2125 -1.0 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu6114 -1.0 -2.6 hypothetical protein compare
Atu3754 -1.0 -3.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4108 -1.0 -5.9 ribonuclease D compare
Atu2787 -0.9 -1.0 hypothetical protein compare
Atu2728 -0.9 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu3026 -0.9 -3.6 short chain dehydrogenase compare
Atu0188 -0.9 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4072 -0.9 -1.8 nodulation protein N compare
Atu2040 -0.9 -3.5 phosphoserine phosphatase compare
Atu0093 -0.9 -2.7 Recombination protein compare
Atu2801 -0.9 -3.4 precorrin-2 C20 methyltransferase compare
Atu8115 -0.9 -4.4 Hypothetical Protein compare
Atu2729 -0.8 -2.5 hypothetical protein compare
Atu0647 -0.8 -3.5 phosphoribosylamine--glycine ligase compare
Atu2439 -0.8 -1.0 hypothetical protein compare
Atu4418 -0.8 -2.9 glutaryl-CoA dehydrogenase compare
Atu0401 -0.8 -3.0 fructokinase compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu1141 -0.8 -3.2 Phosphoribosylglycinamide synthetase compare
Atu8191 -0.8 -1.4 hypothetical protein compare
Atu0912 -0.8 -1.0 Na+/H+ antiporter compare
Atu3008 -0.8 -1.0 hypothetical protein compare
Atu2807 -0.8 -3.5 cob(I)alamin adenosyltransferase compare
Atu2270 -0.8 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu8144 -0.8 -1.8 hypothetical protein compare
Atu8154 -0.8 -3.4 Plasmid stabilization system protein compare
Atu1542 -0.8 -2.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0189 -0.8 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0422 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu1588 -0.8 -3.7 homoserine dehydrogenase compare
Atu2237 -0.7 -3.0 cytochrome c1 compare
Atu3032 -0.7 -2.2 hypothetical protein compare
Atu8093 -0.7 -3.8 hypothetical protein compare
Atu0331 -0.7 -1.9 sigma-54 modulation protein compare
Atu5145 -0.7 -1.5 acetyltransferase compare
Atu4852 -0.7 -3.0 hypothetical protein compare
Atu1685 -0.7 -0.7 hypothetical protein compare
Atu3706 -0.7 -3.8 D-3-phosphoglycerate dehydrogenase compare
Atu2650 -0.7 -4.8 glycerol-3-phosphate dehydrogenase compare
Atu3034 -0.7 -3.4 ROK family transcriptional regulator compare
Atu0185 -0.7 -4.0 methylglyoxal synthase compare
Atu3634 -0.7 -3.3 penicillin-binding protein dacf precursor compare
Atu1291 -0.7 -2.0 hypothetical protein compare
Atu2809 -0.7 -3.7 cobalamin biosynthesis protein compare
Atu0135 -0.7 -1.2 uracil phosphoribosyltransferase compare
Atu0029 -0.7 -1.9 S-adenosylhomocysteine hydrolase compare
Atu4711 -0.7 -2.6 two component sensor kinase compare
Atu0153 -0.7 -3.5 transcriptional regulator, Fur family compare
Atu1140 -0.7 -1.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0322 -0.7 -3.0 enoyl CoA hydratase compare
Atu1355 -0.7 -2.6 hypothetical protein compare
Atu3482 -0.7 -3.2 pantoate--beta-alanine ligase compare
Atu0746 -0.7 -2.1 hypothetical protein compare
Atu0971 -0.7 -2.7 two component sensor kinase compare
Atu6045 -0.7 -1.0 replication protein C compare
Atu3707 -0.7 -1.2 phosphoserine aminotransferase compare
Atu4075 -0.7 -3.6 glycogen synthase compare
Atu0162 -0.7 -2.2 biopolymer transport protein compare
Atu4050 -0.7 -2.2 UTP-glucose-1-phosphate uridylyltransferase compare
Atu6165 -0.7 -0.7 hypothetical protein compare
Atu3798 -0.7 -3.2 TetR family transcriptional regulator compare
Atu4773 -0.7 -0.9 two component response regulator compare
Atu2802 -0.7 -2.9 precorrin-8X methylmutase compare
Atu0467 -0.7 -1.9 hypothetical protein compare
Atu2484 -0.7 -1.3 hypothetical protein compare
Atu3481 -0.7 -2.3 enoyl-CoA hydratase compare
Atu0777 -0.7 -0.6 hypothetical protein compare
Atu3011 -0.6 -1.6 ArsR family transcriptional regulator compare
Atu3311 -0.6 -4.8 phosphomannose isomerase compare
Atu3730 -0.6 -1.2 hypothetical protein compare
Atu2796 -0.6 -2.6 precorrin-4 C11-methyltransferase compare
Atu3001 -0.6 -1.4 hypothetical protein compare
Atu3443 -0.6 -2.1 hypothetical protein compare
Atu4869 -0.6 -2.2 hypothetical protein compare
Atu2677 -0.6 -2.2 protein tyrosine phosphatase compare
Atu3911 -0.6 -1.5 hypothetical protein compare
Atu3073 -0.6 -3.4 aspartate racemase compare
Atu4876 -0.6 -4.0 oxidoreductase compare
Atu3468 -0.6 -0.7 hypothetical protein compare
Atu3031 -0.6 -0.9 hypothetical protein compare
Atu2662 -0.6 -1.1 acetyltransferase compare
Atu3486 -0.6 -1.9 DeoR family transcriptional regulator compare
Atu3473 -0.6 -3.2 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu1725 -0.6 -1.9 hypothetical protein compare
Atu3075 -0.6 -2.9 TetR family transcriptional regulator compare
Atu4884 -0.6 -2.0 hypothetical protein compare
Atu3067 -0.6 -3.2 hypothetical protein compare
Atu1846 -0.6 -1.1 hypothetical protein compare
Atu1677 -0.6 -2.7 queuine tRNA-ribosyltransferase compare
Atu4825 -0.6 -3.1 dehydrogenase compare
Atu2063 -0.6 -0.8 hypothetical protein compare
Atu6098 -0.6 -0.4 transcriptional regulator, HTH family compare
Atu0531 -0.6 -2.3 hypothetical protein compare
Atu3579 -0.6 -1.7 lactoylglutathione lyase compare
Atu3076 -0.6 -2.5 uracil transport protein compare
Atu2766 -0.6 -4.7 NAD-glutamate dehydrogenase compare
Atu4822 -0.6 -4.1 acyl-CoA synthetase compare
Atu0726 -0.6 -3.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu3044 -0.6 -1.8 asparaginase compare
Atu1518 -0.6 -2.3 transcriptional regulator, Fur family compare
Atu0501 -0.6 -3.9 acyl-CoA dehydrogenase compare
Atu5114 -0.6 -1.3 hypothetical protein compare
Atu5164 -0.6 -0.5 type IV secretion protein AvhB3 compare
Atu2804 -0.6 -3.6 cobaltochelatase subunit compare
Atu0469 -0.6 -2.4 hypothetical protein compare
Atu1620 -0.6 -3.6 triosephosphate isomerase compare
Atu4857 -0.6 -3.5 mobilization protein C compare
Atu2183 -0.6 -2.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3472 -0.5 -1.8 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0419 -0.5 -1.1 two component sensor kinase compare
Atu3466 -0.5 -1.2 ArsR family transcriptional regulator compare
Atu0824 -0.5 -0.8 hypothetical protein compare
Atu1229 -0.5 -1.5 hypothetical protein compare
Atu2441 -0.5 -1.4 RNA methylase compare
Atu8118 -0.5 -2.1 putative universal stress protein compare
Atu2200 -0.5 -1.3 cold shock protein compare
Atu2615 -0.5 -3.5 hypothetical protein compare
Atu0535 -0.5 -2.3 hypothetical protein compare
Atu5172 -0.5 -2.5 type IV secretion protein AvhB11 compare
Atu0471 -0.5 -2.2 hypothetical protein compare
Atu1736 -0.5 -2.8 manganese transport protein compare
Atu3913 -0.5 -3.4 biotin carboxylase compare
Atu2772 -0.5 -2.7 Invasion protein A compare
Atu0894 -0.5 -1.1 ABC transporter, membrane spanning protein compare
Atu8194 -0.5 -1.9 hypothetical protein compare
Atu0036 -0.5 -1.6 hypothetical protein compare
Atu2567 -0.5 -1.4 thiamin biosynthesis protein ThiG compare
Atu0744 -0.5 -1.9 hypothetical protein compare
Atu0435 -0.5 -0.9 tRNA-Gly compare
Atu4887 -0.5 -1.6 hypothetical protein compare
Atu4873 -0.5 -2.3 TetR family transcriptional regulator compare
Atu3667 -0.5 -2.5 aspartate alpha-decarboxylase compare
Atu3144 -0.5 -1.9 GntR family transcriptional regulator compare
Atu5155 -0.5 -1.5 MarR family transcriptional regulator compare
Atu4502 -0.5 -2.3 cobalamin synthesis protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress copper (II) chloride dihydrate across organisms