Experiment set4IT013 for Agrobacterium fabrum C58

Compare to:

R2A with Nickel (II) chloride hexahydrate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Atu0017 -3.8 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4773 -3.6 -2.7 two component response regulator compare
Atu0434 -2.8 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1687 -2.5 -6.4 anthranilate phosphoribosyltransferase compare
Atu5430 -2.4 -1.7 hypothetical protein compare
Atu2684 -2.3 -1.8 hypothetical protein compare
Atu1307 -2.3 -5.6 dihydroorotase compare
Atu1688 -2.1 -5.2 indole-3-glycerol-phosphate synthase compare
Atu2289 -2.0 -9.3 anthranilate synthase component I and II compare
Atu0346 -2.0 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0184 -1.9 -4.1 glucokinase compare
Atu1308 -1.8 -4.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3469 -1.7 -2.9 phosphoglyceromutase compare
Atu1030 -1.7 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0041 -1.6 -2.0 glutamine amidotransferase compare
Atu0103 -1.5 -8.5 penicillin-binding protein compare
Atu0400 -1.5 -3.3 orotate phosphoribosyltransferase compare
Atu2040 -1.5 -5.3 phosphoserine phosphatase compare
Atu0026 -1.5 -1.3 hypothetical protein compare
Atu0486 -1.5 -4.8 dihydroorotate dehydrogenase compare
Atu2728 -1.5 -3.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2710 -1.5 -7.5 hypothetical protein compare
Atu3763 -1.4 -2.4 hypothetical protein compare
Atu0647 -1.3 -5.4 phosphoribosylamine--glycine ligase compare
Atu1344 -1.3 -2.2 hypothetical protein compare
Atu0399 -1.3 -4.3 dihydroorotase compare
Atu0043 -1.3 -2.3 imidazoleglycerol-phosphate dehydratase compare
Atu1845 -1.3 -3.2 phosphoribosylformylglycinamidine synthase I compare
Atu0421 -1.3 -1.6 ABC transporter, membrane spanning protein compare
Atu1844 -1.3 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu2798 -1.2 -4.0 precorrin-6y methyltransferase compare
Atu5115 -1.2 -1.4 hypothetical protein compare
Atu2057 -1.2 -2.0 DNA helicase II compare
Atu4882 -1.2 -2.2 hypothetical protein compare
Atu3008 -1.2 -1.4 hypothetical protein compare
Atu0298 -1.2 -5.6 orotidine 5 compare
Atu2805 -1.2 -3.7 cobalamin synthesis protein compare
Atu0972 -1.2 -5.2 lipA protein compare
Atu0039 -1.1 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu3706 -1.1 -5.6 D-3-phosphoglycerate dehydrogenase compare
Atu2802 -1.1 -4.1 precorrin-8X methylmutase compare
Atu6189 -1.1 -1.1 protein secretion chaperone compare
Atu3120 -1.1 -1.2 hypothetical protein compare
Atu3754 -1.1 -6.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1686 -1.1 -5.5 peptidyl-prolyl cis-trans isomerse D compare
Atu5540 -1.1 -0.9 hypothetical protein compare
Atu0188 -1.1 -4.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3014 -1.1 -1.7 hypothetical protein compare
Atu0029 -1.1 -3.7 S-adenosylhomocysteine hydrolase compare
Atu3012 -1.1 -1.9 hypothetical protein compare
Atu0723 -1.0 -1.8 FAD dependent oxidoreductase compare
Atu2207 -1.0 -3.0 two component sensor kinase compare
Atu2800 -1.0 -3.4 precorrin-3B C17-methyltransferase compare
Atu0062 -1.0 -6.7 transcriptional regulator, ROK family compare
Atu0535 -1.0 -3.8 hypothetical protein compare
Atu0025 -1.0 -2.1 hypothetical protein compare
Atu1446 -1.0 -2.0 two component response regulator compare
Atu2808 -1.0 -4.3 cobyric acid synthase compare
Atu0598 -1.0 -6.8 phosphogluconate dehydratase compare
Atu2650 -1.0 -6.0 glycerol-3-phosphate dehydrogenase compare
Atu1260 -1.0 -1.7 hypothetical protein compare
Atu1774 -1.0 -4.6 ABC transporter, substrate binding protein (peptide) compare
Atu4887 -1.0 -2.7 hypothetical protein compare
Atu2073 -1.0 -2.5 membrane protein compare
Atu2809 -0.9 -5.6 cobalamin biosynthesis protein compare
Atu2249 -0.9 -0.9 hypothetical protein compare
Atu4616 -0.9 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu1542 -0.9 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3634 -0.9 -3.6 penicillin-binding protein dacf precursor compare
Atu0190 -0.9 -4.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1075 -0.9 -3.1 amidophosphoribosyltransferase compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu1355 -0.9 -3.8 hypothetical protein compare
Atu1163 -0.9 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0040 -0.9 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4884 -0.9 -2.4 hypothetical protein compare
Atu2796 -0.9 -2.9 precorrin-4 C11-methyltransferase compare
Atu1141 -0.9 -3.6 Phosphoribosylglycinamide synthetase compare
Atu0845 -0.8 -2.5 hypothetical protein compare
Atu4854 -0.8 -4.0 hypothetical protein compare
Atu5028 -0.8 -1.9 IS426 transposase compare
Atu4075 -0.8 -3.7 glycogen synthase compare
Atu1851 -0.8 -2.2 BolA/YrbA family protein compare
Atu4824 -0.8 -4.7 IclR family transcriptional regulator compare
Atu4317 -0.8 -1.7 TetR family transcriptional regulator compare
Atu6114 -0.8 -1.4 hypothetical protein compare
Atu4888 -0.8 -3.9 hypothetical protein compare
Atu1620 -0.8 -5.2 triosephosphate isomerase compare
Atu1891 -0.8 -2.1 cobalamin biosynthesis protein compare
Atu4897 -0.8 -1.8 hypothetical protein compare
Atu4711 -0.8 -2.2 two component sensor kinase compare
Atu5470 -0.8 -1.3 hypothetical protein compare
Atu0030 -0.8 -1.2 phosphocarrier protein HPr compare
Atu4108 -0.8 -3.7 ribonuclease D compare
Atu3598 -0.8 -1.1 thiol:disulfide interchange protein compare
Atu3481 -0.8 -4.3 enoyl-CoA hydratase compare
Atu3483 -0.8 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1028 -0.8 -1.6 hypothetical protein compare
Atu4865 -0.7 -4.0 oxidoreductase compare
Atu3054 -0.7 -4.9 hypothetical protein compare
Atu2067 -0.7 -0.9 hypothetical protein compare
Atu0842 -0.7 -1.5 hypothetical protein compare
Atu3073 -0.7 -3.5 aspartate racemase compare
Atu8118 -0.7 -2.8 putative universal stress protein compare
Atu0185 -0.7 -2.7 methylglyoxal synthase compare
Atu0471 -0.7 -1.6 hypothetical protein compare
Atu4866 -0.7 -4.2 hypothetical protein compare
Atu4896 -0.7 -1.8 acetyltransferase compare
Atu2193 -0.7 -0.8 hypothetical protein compare
Atu3047 -0.7 -4.5 oligopeptide ABC transporter permease compare
Atu4857 -0.7 -4.3 mobilization protein C compare
Atu4873 -0.7 -2.7 TetR family transcriptional regulator compare
Atu1364 -0.7 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4881 -0.7 -3.1 hypothetical protein compare
Atu3697 -0.7 -2.2 ATP-dependent protease LA 2 compare
Atu0690 -0.7 -1.4 hypothetical protein compare
Atu1387 -0.7 -2.1 transcriptional regulator, GntR family compare
Atu1466 -0.7 -1.3 hypothetical protein compare
Atu0401 -0.7 -4.1 fructokinase compare
Atu2797 -0.7 -1.4 cobalamin biosynthesis protein compare
Atu5468 -0.7 -1.5 hypothetical protein compare
Atu8056 -0.7 -0.7 hypothetical protein compare
Atu2807 -0.7 -3.8 cob(I)alamin adenosyltransferase compare
Atu2795 -0.7 -2.8 cobalamin biosynthetic protein compare
Atu0956 -0.7 -3.1 phage prohead protease compare
Atu2464 -0.7 -2.0 formyltetrahydrofolate deformylase compare
Atu4848 -0.7 -3.7 2-deoxyribose-5-phosphate aldolase compare
Atu4144 -0.6 -0.9 hypothetical protein compare
Atu1445 -0.6 -2.3 two component sensor kinase compare
Atu5014 -0.6 -2.1 plasmid stabilization protein compare
Atu1527 -0.6 -1.3 nitrogen fixation protein FixS compare
Atu2615 -0.6 -3.7 hypothetical protein compare
Atu4852 -0.6 -3.2 hypothetical protein compare
Atu5146 -0.6 -1.1 hypothetical protein compare
Atu2787 -0.6 -0.7 hypothetical protein compare
Atu4846 -0.6 -4.9 hypothetical protein compare
Atu2804 -0.6 -3.9 cobaltochelatase subunit compare
Atu0973 -0.6 -3.2 cycH protein compare
Atu4855 -0.6 -5.3 conjugation protein compare
Atu1667 -0.6 -1.0 hypothetical protein compare
Atu4844 -0.6 -4.7 sugar ABC transporter permease compare
Atu2803 -0.6 -2.1 Cobalamin biosynthesis associated protein compare
Atu4877 -0.6 -3.7 short-chain dehydrogenase compare
Atu3020 -0.6 -4.0 GntR family transcriptional regulator compare
Atu3579 -0.6 -2.1 lactoylglutathione lyase compare
Atu3485 -0.6 -3.5 short chain dehydrogenase compare
Atu4837 -0.6 -2.8 hypothetical protein compare
Atu2381 -0.6 -1.6 hypothetical protein compare
Atu3026 -0.6 -3.1 short chain dehydrogenase compare
Atu4791 -0.6 -1.7 hypothetical protein compare
Atu2578 -0.6 -3.2 cAMP-dependent protein kinase regulatory subunit compare
Atu1468 -0.6 -2.6 hypothetical protein compare
Atu0470 -0.6 -1.6 hypothetical protein compare
Atu1694 -0.6 -1.1 hypothetical protein compare
Atu4869 -0.6 -1.7 hypothetical protein compare
Atu3015 -0.6 -2.8 hypothetical protein compare
Atu2729 -0.6 -1.5 hypothetical protein compare
Atu3041 -0.6 -4.6 dipeptide ABC transporter substrate-binding protein compare
Atu1291 -0.6 -1.1 hypothetical protein compare
Atu4671 -0.6 -1.8 response regulator compare
Atu4418 -0.6 -1.6 glutaryl-CoA dehydrogenase compare
Atu1110 -0.6 -1.5 cytosol aminopeptidase compare
Atu4892 -0.6 -4.1 hypothetical protein compare
Atu3037 -0.6 -3.2 dipeptide ABC transporter permease compare
Atu1606 -0.6 -2.7 methionine aminopeptidase compare
Atu4143 -0.6 -2.5 hypothetical protein compare
Atu3472 -0.6 -1.9 2-oxoisovalerate dehydrogenase subunit beta compare
Atu4825 -0.6 -2.9 dehydrogenase compare
Atu5173 -0.6 -1.5 dehydrogenase compare
Atu3016 -0.6 -2.7 phosphoglyceromutase compare
Atu4842 -0.6 -4.5 sugar ABC transporter substrate-binding protein compare
Atu4868 -0.6 -3.4 oxidoreductase compare
Atu2238 -0.6 -3.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1021 -0.6 -1.2 outer membrane protein compare
Atu4880 -0.6 -3.3 AraC family transcriptional regulator compare
Atu3050 -0.6 -3.6 AgaE protein compare
Atu2634 -0.6 -1.4 hypothetical protein compare
Atu3040 -0.6 -3.3 hypothetical protein compare
Atu3731 -0.6 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0322 -0.6 -1.9 enoyl CoA hydratase compare
Atu1103 -0.6 -1.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3727 -0.6 -2.6 hypothetical protein compare
Atu0977 -0.6 -1.8 serine protease DO-like protease compare
Atu3039 -0.6 -3.7 hydantoinase beta subunit-like protein compare
Atu4853 -0.6 -2.8 hypothetical protein compare
Atu4849 -0.5 -3.6 NADP-dependent aldehyde dehydrogenase compare
Atu0678 -0.5 -2.4 histidyl-tRNA synthetase compare
Atu4859 -0.5 -3.8 hypothetical protein compare
Atu0153 -0.5 -2.3 transcriptional regulator, Fur family compare
Atu3043 -0.5 -3.8 hydantoinase beta subunit-like protein compare
Atu0894 -0.5 -1.4 ABC transporter, membrane spanning protein compare
Atu0727 -0.5 -3.6 ferredoxin I compare
Atu3017 -0.5 -0.9 phosphoglyceromutase compare
Atu4876 -0.5 -3.6 oxidoreductase compare
Atu8126 -0.5 -2.2 putative phage tail protein I compare
Atu0971 -0.5 -1.8 two component sensor kinase compare
Atu3070 -0.5 -3.1 allantoate amidohydrolase compare
Atu4879 -0.5 -2.7 hypothetical protein compare
Atu1739 -0.5 -2.7 permease compare
Atu4894 -0.5 -3.2 transposase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms