Experiment set4IT012 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

200 most detrimental genes:

  gene name fitness t score description  
ECD_01250 +3.2 5.3 DNA topoisomerase I, omega subunit compare
ECD_02033 +3.1 8.8 hypothetical protein compare
ECD_01487 +3.1 15.2 phage N15 gp48-like protein compare
ECD_01059 +2.8 5.1 lipoprotein, DUF1439 family compare
ECD_01556 +2.7 2.1 putative selenate reductase, periplasmic compare
ECD_01557 +2.6 3.7 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_01897 +2.6 3.4 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_02021 +2.5 12.6 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_01719 +2.5 2.2 TVP38/TMEM64 family inner membrane protein compare
ECD_01310 +2.5 3.0 stress-induced protein compare
ECD_01276 +2.5 10.3 repressor for the divergent puu operons, putrescine inducible compare
ECD_02024 +2.5 7.0 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_01084 +2.4 15.6 DUF177 family protein compare
ECD_01489 +2.4 8.6 transcriptional repressor of multiple antibiotic resistance compare
ECD_01810 +2.3 2.2 DUF2511 family protein compare
ECD_01281 +2.3 8.4 regulatory protein for phage-shock-protein operon compare
ECD_01435 +2.3 4.1 putative DNA-binding transcriptional regulator compare
ECD_03556 +2.3 3.3 ilvB operon leader peptide compare
ECD_t00038 +2.2 7.2 tRNA-Arg compare
ECD_t00008 +2.2 7.8 tRNA-Gln compare
ECD_01619 +2.2 8.6 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_01713 +2.2 3.7 succinylglutamate desuccinylase compare
ECD_t00039 +2.1 5.1 tRNA-Ala compare
ECD_01081 +2.1 6.9 uncharacterized protein compare
ECD_02179 +2.1 17.0 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_01245 +2.0 9.1 23S rRNA pseudouridine(2605) synthase compare
ECD_01160 +2.0 8.0 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_01611 +2.0 9.9 outer membrane lipoprotein compare
ECD_01681 +2.0 3.4 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_04342 +2.0 13.6 hypothetical protein compare
ECD_01702 +2.0 4.1 chito-oligosaccharide deacetylase compare
ECD_02178 +2.0 12.1 putative LPS core heptose(II)-phosphate phosphatase compare
ECD_01082 +2.0 8.5 23S rRNA pseudouridine(955,2504,2580) synthase compare
ECD_01459 +2.0 1.8 putative oxidoreductase compare
ECD_01737 +2.0 1.4 nicotinamidase/pyrazinamidase compare
ECD_01826 +1.9 4.5 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_00781 +1.9 8.3 outer membrane protein X compare
ECD_01802 +1.8 8.5 RNA chaperone, putative ProP translation regulator compare
ECD_00311 +1.8 6.0 regulator protein that represses frmRAB operon compare
ECD_01625 +1.8 1.8 murein DD-endopeptidase, space-maker hydrolase compare
ECD_02181 +1.8 14.6 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_02097 +1.7 7.6 fructose-1-phosphate kinase compare
ECD_01875 +1.7 11.9 tyrosine transporter compare
ECD_02180 +1.7 11.8 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_02018 +1.7 4.4 galactitol-specific enzyme IIC component of PTS compare
ECD_01629 +1.7 3.8 transcriptional repressor, hypoxanthine-binding compare
ECD_00509 +1.7 4.8 DLP12 prophage; putative lipoprotein compare
ECD_02105 +1.7 14.0 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_00970 +1.7 3.7 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_00574 +1.7 8.9 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01624 +1.7 3.7 glutaredoxin-4 compare
ECD_01080 +1.6 6.8 endoribonuclease; RNA-binding protein compare
ECD_02404 +1.6 3.5 BamABCDE complex OM biogenesis lipoprotein compare
ECD_01277 +1.6 2.5 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase compare
ECD_02090 +1.6 2.5 nucleoside permease compare
ECD_01562 +1.6 1.3 putative dethiobiotin synthetase compare
ECD_01063 +1.6 2.4 UPF0502 family protein compare
ECD_01121 +1.6 3.5 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_00392 +1.6 8.3 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_02523 +1.6 11.0 tributyltin-inducible repressor of ygaVP compare
ECD_00961 +1.6 10.3 outer membrane protein A (3a compare
ECD_02278 +1.5 2.4 multidrug resistance efflux pump membrane fusion protein compare
ECD_01828 +1.5 2.7 zinc ABC transporter periplasmic binding protein compare
ECD_02182 +1.5 5.8 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_01854 +1.5 2.4 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_01770 +1.5 2.0 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_01703 +1.5 2.4 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_01930 +1.5 8.7 UDP-glucose 6-dehydrogenase compare
ECD_t00011 +1.5 3.6 tRNA-Gln compare
ECD_02840 +1.5 2.9 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_00901 +1.5 1.4 putative isochorismatase family hydrolase compare
ECD_01957 +1.4 1.7 GDP-mannose mannosyl hydrolase compare
ECD_00380 +1.4 1.9 cytochrome o ubiquinol oxidase subunit IV compare
ECD_00849 +1.4 2.6 putative DNA-invertase compare
ECD_02085 +1.4 10.4 lysine transporter compare
ECD_01492 +1.4 1.2 cysteine and O-acetyl-L-serine efflux system compare
ECD_01019 +1.4 2.6 putative membrane protein compare
ECD_00807 +1.4 1.3 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_01097 +1.4 4.1 fused glucose-specific PTS enzymes: IIB component/IIC component compare
ECD_t00054 +1.4 5.6 tRNA-Gly compare
ECD_01836 +1.4 5.1 dihydroneopterin triphosphate pyrophosphatase compare
ECD_00381 +1.3 9.1 cytochrome o ubiquinol oxidase subunit III compare
ECD_01844 +1.3 1.3 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_02276 +1.3 9.0 D-serine dehydratase compare
ECD_01960 +1.3 2.4 putative acyl transferase compare
ECD_02686 +1.3 11.6 diaminopimelate decarboxylase, PLP-binding compare
ECD_02289 +1.3 9.1 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_01727 +1.3 2.2 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_00112 +1.3 8.7 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_00882 +1.3 5.8 DUF535 family protein compare
ECD_01240 +1.3 2.2 PHP domain protein compare
ECD_04388 +1.2 3.7 putative membrane-bound BasS regulator compare
ECD_04293 +1.2 4.5 inhibitor of glucose uptake compare
ECD_02484 +1.2 8.9 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_01289 +1.2 1.5 putative sugar ABC transporter permease compare
ECD_01164 +1.2 2.6 D-amino acid dehydrogenase compare
ECD_00382 +1.2 9.7 cytochrome o ubiquinol oxidase subunit I compare
ECD_00383 +1.2 9.2 cytochrome o ubiquinol oxidase subunit II compare
ECD_00417 +1.2 4.7 DUF2496 family protein compare
ECD_00077 +1.2 6.5 leu operon leader peptide compare
ECD_00001 +1.2 2.3 thr operon leader peptide compare
ECD_01824 +1.2 4.8 putative DNA-binding transcriptional regulator compare
ECD_00061 +1.2 11.1 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_00947 +1.2 1.9 putative fimbrial-like adhesin protein compare
ECD_01381 +1.2 3.7 OPG biosynthetic periplasmic protein compare
ECD_02098 +1.2 2.9 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_01906 +1.2 1.5 hypothetical protein compare
ECD_01579 +1.2 4.1 inhibitor of replication at Ter, DNA-binding protein compare
ECD_03696 +1.2 1.4 DUF2628 family putative inner membrane protein compare
ECD_01799 +1.2 0.8 putative transporter compare
ECD_01026 +1.2 1.4 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_03118 +1.1 8.3 tRNA-dihydrouridine synthase B compare
ECD_02177 +1.1 1.7 nucleoside triphosphatase compare
ECD_00689 +1.1 3.1 transcriptional repressor for the mannosyl-D-glycerate catabolic operon compare
ECD_02505 +1.1 8.8 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_00379 +1.1 8.3 protoheme IX farnesyltransferase compare
ECD_02390 +1.1 7.8 uracil phosphoribosyltransferase compare
ECD_01122 +1.1 2.3 spermidine/putrescine ABC transporter permease compare
ECD_00883 +1.1 3.6 macrolide transporter membrane fusion protein (MFP) component compare
ECD_01798 +1.1 3.4 KDG regulon transcriptional repressor compare
ECD_01020 +1.1 3.1 inactive ferrous ion transporter EfeUOB compare
ECD_01391 +1.1 1.0 BenE family inner membrane putative transporter compare
ECD_02478 +1.1 4.8 protein lysine acetyltransferase compare
ECD_02423 +1.1 5.7 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_01739 +1.1 3.0 putative DNA-binding transcriptional regulator compare
ECD_00461 +1.1 1.9 putative allantoin transporter compare
ECD_01671 +1.1 3.2 phosphoenolpyruvate synthase compare
ECD_t00085 +1.1 7.3 tRNA-Leu compare
ECD_01013 +1.1 3.1 putative aminoacrylate deaminase, reactive intermediate detoxification; weak enamine/imine deaminase activity compare
ECD_02103 +1.1 2.1 Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein compare
ECD_01789 +1.1 1.5 mannose-specific enzyme IID component of PTS compare
ECD_02482 +1.1 7.7 protein disaggregation chaperone compare
ECD_01794 +1.1 3.1 DUF2527 family heat-induced protein compare
ECD_00998 +1.0 2.2 response regulator in two-component regulatory system with TorS compare
ECD_02677 +1.0 9.3 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_00535 +1.0 1.6 copper/silver efflux system, membrane fusion protein compare
ECD_02951 +1.0 1.7 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_02525 +1.0 2.4 DNA binding protein, nucleoid-associated compare
ECD_01390 +1.0 1.0 IS609 transposase B compare
ECD_01751 +1.0 2.6 scaffolding protein for murein synthesizing machinery compare
ECD_01124 +1.0 1.7 spermidine/putrescine ABC transporter ATPase compare
ECD_02369 +1.0 3.6 BamABCDE complex OM biogenesis lipoprotein compare
ECD_01060 +1.0 1.0 glutaredoxin 2 (Grx2) compare
ECD_02416 +1.0 2.3 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_01959 +1.0 2.7 GDP-D-mannose dehydratase, NAD(P)-binding compare
ECD_01842 +1.0 2.0 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_00857 +1.0 3.9 ribosomal protein S6 modification protein compare
ECD_01021 +1.0 3.2 deferrrochelatase, periplasmic compare
ECD_01929 +1.0 4.8 regulator of length of O-antigen component of lipopolysaccharide chains compare
ECD_02244 +1.0 4.3 putative semialdehyde dehydrogenase compare
ECD_02769 +1.0 2.8 uncharacterized protein compare
ECD_01056 +1.0 2.2 biofilm regulator compare
ECD_02539 +1.0 6.9 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00130 +1.0 2.6 aspartate 1-decarboxylase compare
ECD_01917 +1.0 4.2 putrescine importer, low affinity compare
ECD_01803 +1.0 2.4 free methionine-(R)-sulfoxide reductase compare
ECD_01374 +1.0 1.4 cytochrome b561 compare
ECD_01302 +1.0 1.8 L-Ala-D/L-Glu epimerase compare
ECD_02409 +1.0 7.1 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_02659 +1.0 6.0 glycine cleavage system transcriptional activator; autorepressor compare
ECD_t00083 +1.0 3.2 tRNA-Leu compare
ECD_00204 +1.0 7.7 putative membrane-bound lytic murein transglycosylase D compare
ECD_00752 +0.9 1.5 molybdopterin synthase, large subunit compare
ECD_00032 +0.9 1.4 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_00399 +0.9 1.5 putative DNA-binding transcriptional regulator compare
ECD_00375 +0.9 5.7 putative transporter compare
ECD_02017 +0.9 3.3 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding compare
ECD_02776 +0.9 6.5 16S rRNA m(3)U1498 methyltransferase, SAM-dependent compare
ECD_t00059 +0.9 1.8 tRNA-Thr compare
ECD_01148 +0.9 2.4 hypothetical protein compare
ECD_00667 +0.9 0.6 DUF1722 family protein compare
ECD_02077 +0.9 2.1 methyl-galactoside transporter subunit compare
ECD_02893 +0.9 5.1 antitoxin for MqsR toxin; transcriptional repressor compare
ECD_00028 +0.9 4.0 uncharacterized protein compare
ECD_01736 +0.9 1.0 cytoplasmic L-asparaginase 1 compare
ECD_01322 +0.9 1.5 Rac prophage; integrase compare
ECD_04246 +0.9 6.6 16S rRNA m(2)G1207 methyltransferase, SAM-dependent compare
ECD_00963 +0.9 2.9 CRP-S-dependent promoter expression factor compare
ECD_01693 +0.9 1.5 uncharacterized protein compare
ECD_01298 +0.9 2.3 DUF463 family protein, putative P-loop NTPase compare
ECD_01105 +0.9 3.3 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_01912 +0.9 0.8 DNA gyrase inhibitor compare
ECD_02424 +0.9 3.7 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent compare
ECD_01161 +0.9 2.7 sodium:proton antiporter compare
ECD_00443 +0.9 4.8 DnaK co-chaperone, thioredoxin-like protein compare
ECD_04371 +0.9 3.3 DUF2387 family putative metal-binding protein compare
ECD_01581 +0.9 3.8 fumarate hydratase (fumarase A), aerobic Class I compare
ECD_02129 +0.9 2.2 quinol dehydrogenase, electron source for NapAB compare
ECD_04084 +0.9 1.8 DUF24 family HxlR-type putative transcriptional regulator compare
ECD_02882 +0.9 6.5 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter compare
ECD_01787 +0.9 1.4 fused mannose-specific PTS enzymes: IIA component/IIB component compare
ECD_02063 +0.9 2.7 D-lactate dehydrogenase, FAD-binding, NADH independent compare
ECD_00082 +0.9 1.9 RsmH methytransferase inhibitor compare
ECD_01795 +0.8 2.1 putative inner membrane protein compare
ECD_01263 +0.8 1.9 ribonuclease II compare
ECD_01032 +0.8 1.4 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_00911 +0.8 3.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_01071 +0.8 1.5 flagellar hook assembly protein compare
ECD_02208 +0.8 4.6 NADH:ubiquinone oxidoreductase, chain G compare
ECD_02032 +0.8 2.2 hydoxyethylthiazole kinase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in balo experiments