Experiment set4IT011 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

200 most detrimental genes:

  gene name fitness t score description  
ECD_01487 +3.4 19.1 phage N15 gp48-like protein compare
ECD_02033 +3.3 12.8 hypothetical protein compare
ECD_01719 +3.0 2.5 TVP38/TMEM64 family inner membrane protein compare
ECD_01556 +2.9 2.3 putative selenate reductase, periplasmic compare
ECD_01281 +2.8 9.1 regulatory protein for phage-shock-protein operon compare
ECD_01810 +2.8 3.2 DUF2511 family protein compare
ECD_01310 +2.7 3.2 stress-induced protein compare
ECD_03556 +2.7 4.2 ilvB operon leader peptide compare
ECD_01681 +2.6 5.8 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01557 +2.5 3.2 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_01489 +2.5 6.8 transcriptional repressor of multiple antibiotic resistance compare
ECD_01619 +2.5 10.1 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_02021 +2.4 15.9 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_01459 +2.4 2.0 putative oxidoreductase compare
ECD_01897 +2.4 2.9 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_t00039 +2.4 6.0 tRNA-Ala compare
ECD_01059 +2.4 3.6 lipoprotein, DUF1439 family compare
ECD_01713 +2.4 4.6 succinylglutamate desuccinylase compare
ECD_02024 +2.3 7.1 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_01160 +2.3 11.8 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_01625 +2.3 2.9 murein DD-endopeptidase, space-maker hydrolase compare
ECD_01250 +2.3 4.2 DNA topoisomerase I, omega subunit compare
ECD_01737 +2.3 1.6 nicotinamidase/pyrazinamidase compare
ECD_t00008 +2.2 8.4 tRNA-Gln compare
ECD_02097 +2.2 9.4 fructose-1-phosphate kinase compare
ECD_02179 +2.1 14.7 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_01611 +2.1 10.2 outer membrane lipoprotein compare
ECD_01084 +2.1 13.0 DUF177 family protein compare
ECD_01276 +2.1 9.1 repressor for the divergent puu operons, putrescine inducible compare
ECD_01875 +2.1 14.8 tyrosine transporter compare
ECD_02105 +2.0 15.8 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_04342 +2.0 12.2 hypothetical protein compare
ECD_01624 +2.0 3.6 glutaredoxin-4 compare
ECD_t00038 +1.9 4.6 tRNA-Arg compare
ECD_01245 +1.9 5.4 23S rRNA pseudouridine(2605) synthase compare
ECD_01019 +1.9 4.9 putative membrane protein compare
ECD_01081 +1.9 7.1 uncharacterized protein compare
ECD_01629 +1.9 3.9 transcriptional repressor, hypoxanthine-binding compare
ECD_01703 +1.9 3.0 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_01082 +1.9 11.1 23S rRNA pseudouridine(955,2504,2580) synthase compare
ECD_01828 +1.8 3.8 zinc ABC transporter periplasmic binding protein compare
ECD_01702 +1.8 3.3 chito-oligosaccharide deacetylase compare
ECD_00380 +1.8 2.7 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02178 +1.8 11.2 putative LPS core heptose(II)-phosphate phosphatase compare
ECD_00574 +1.8 8.1 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01930 +1.8 10.6 UDP-glucose 6-dehydrogenase compare
ECD_00781 +1.8 8.1 outer membrane protein X compare
ECD_00970 +1.8 4.9 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01826 +1.8 4.6 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_02181 +1.7 13.4 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_01063 +1.7 3.4 UPF0502 family protein compare
ECD_01390 +1.7 2.0 IS609 transposase B compare
ECD_00392 +1.7 7.5 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01854 +1.7 3.0 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_01960 +1.7 2.7 putative acyl transferase compare
ECD_00032 +1.7 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_01435 +1.7 2.4 putative DNA-binding transcriptional regulator compare
ECD_01977 +1.6 1.4 ser/thr phosphatase-related protein compare
ECD_02018 +1.6 5.3 galactitol-specific enzyme IIC component of PTS compare
ECD_01957 +1.6 1.5 GDP-mannose mannosyl hydrolase compare
ECD_02180 +1.6 8.5 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_00311 +1.6 5.2 regulator protein that represses frmRAB operon compare
ECD_00901 +1.6 1.5 putative isochorismatase family hydrolase compare
ECD_01097 +1.6 6.9 fused glucose-specific PTS enzymes: IIB component/IIC component compare
ECD_01589 +1.6 1.9 transcriptional repressor of Mal regulon compare
ECD_01121 +1.6 3.0 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_01240 +1.6 2.2 PHP domain protein compare
ECD_00961 +1.6 9.1 outer membrane protein A (3a compare
ECD_02523 +1.5 11.2 tributyltin-inducible repressor of ygaVP compare
ECD_01562 +1.5 1.6 putative dethiobiotin synthetase compare
ECD_01836 +1.5 6.0 dihydroneopterin triphosphate pyrophosphatase compare
ECD_01799 +1.5 1.5 putative transporter compare
ECD_01736 +1.5 1.8 cytoplasmic L-asparaginase 1 compare
ECD_01164 +1.5 3.4 D-amino acid dehydrogenase compare
ECD_02182 +1.5 5.5 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_01824 +1.5 5.8 putative DNA-binding transcriptional regulator compare
ECD_01802 +1.4 6.3 RNA chaperone, putative ProP translation regulator compare
ECD_01289 +1.4 2.2 putative sugar ABC transporter permease compare
ECD_00947 +1.4 1.8 putative fimbrial-like adhesin protein compare
ECD_00509 +1.4 3.9 DLP12 prophage; putative lipoprotein compare
ECD_01579 +1.4 6.1 inhibitor of replication at Ter, DNA-binding protein compare
ECD_t00054 +1.4 6.2 tRNA-Gly compare
ECD_00382 +1.4 11.0 cytochrome o ubiquinol oxidase subunit I compare
ECD_01784 +1.4 6.0 L-serine dehydratase 1 compare
ECD_01492 +1.4 1.7 cysteine and O-acetyl-L-serine efflux system compare
ECD_02423 +1.4 7.7 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_00381 +1.4 8.3 cytochrome o ubiquinol oxidase subunit III compare
ECD_00807 +1.4 1.4 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_01798 +1.4 5.8 KDG regulon transcriptional repressor compare
ECD_02276 +1.3 7.3 D-serine dehydratase compare
ECD_02085 +1.3 10.5 lysine transporter compare
ECD_02098 +1.3 3.5 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_00077 +1.3 6.9 leu operon leader peptide compare
ECD_02177 +1.3 1.8 nucleoside triphosphatase compare
ECD_00001 +1.3 2.2 thr operon leader peptide compare
ECD_02289 +1.3 8.0 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_00335 +1.3 4.8 shikimate kinase II compare
ECD_02686 +1.3 11.2 diaminopimelate decarboxylase, PLP-binding compare
ECD_02090 +1.3 1.8 nucleoside permease compare
ECD_00379 +1.3 9.4 protoheme IX farnesyltransferase compare
ECD_01290 +1.3 2.3 putative Zn-dependent NAD(P)-binding oxidoreductase compare
ECD_t00011 +1.3 3.1 tRNA-Gln compare
ECD_02278 +1.3 2.1 multidrug resistance efflux pump membrane fusion protein compare
ECD_00383 +1.3 8.2 cytochrome o ubiquinol oxidase subunit II compare
ECD_02390 +1.2 6.9 uracil phosphoribosyltransferase compare
ECD_01277 +1.2 1.6 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase compare
ECD_01021 +1.2 3.6 deferrrochelatase, periplasmic compare
ECD_01263 +1.2 3.4 ribonuclease II compare
ECD_01006 +1.2 1.8 uncharacterized protein compare
ECD_01912 +1.2 1.7 DNA gyrase inhibitor compare
ECD_00112 +1.2 9.3 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_01374 +1.2 1.7 cytochrome b561 compare
ECD_01026 +1.1 1.0 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_04388 +1.1 3.5 putative membrane-bound BasS regulator compare
ECD_00955 +1.1 1.4 paraquat-inducible, SoxRS-regulated MCE domain protein compare
ECD_00417 +1.1 3.0 DUF2496 family protein compare
ECD_t00085 +1.1 7.0 tRNA-Leu compare
ECD_00813 +1.1 1.1 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_01124 +1.1 2.0 spermidine/putrescine ABC transporter ATPase compare
ECD_02224 +1.1 2.1 putative NUDIX hydrolase compare
ECD_01844 +1.1 1.5 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01825 +1.1 4.1 pyruvate kinase II compare
ECD_01727 +1.1 1.6 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_01610 +1.1 3.1 anhydro-N-acetylmuramic acid kinase compare
ECD_00882 +1.1 5.2 DUF535 family protein compare
ECD_00130 +1.1 3.0 aspartate 1-decarboxylase compare
ECD_00702 +1.1 3.6 periplasmic TolA-binding protein compare
ECD_01789 +1.1 1.7 mannose-specific enzyme IID component of PTS compare
ECD_01302 +1.1 2.5 L-Ala-D/L-Glu epimerase compare
ECD_01080 +1.1 3.8 endoribonuclease; RNA-binding protein compare
ECD_01381 +1.1 3.6 OPG biosynthetic periplasmic protein compare
ECD_02505 +1.1 8.2 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_01770 +1.1 1.3 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_01069 +1.1 1.5 flagellar component of cell-proximal portion of basal-body rod compare
ECD_01020 +1.1 2.5 inactive ferrous ion transporter EfeUOB compare
ECD_01751 +1.0 2.5 scaffolding protein for murein synthesizing machinery compare
ECD_00061 +1.0 9.5 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_03118 +1.0 7.8 tRNA-dihydrouridine synthase B compare
ECD_02484 +1.0 6.6 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_02539 +1.0 7.3 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00443 +1.0 4.2 DnaK co-chaperone, thioredoxin-like protein compare
ECD_00606 +1.0 5.4 ribosomal silencing factor compare
ECD_02482 +1.0 7.2 protein disaggregation chaperone compare
ECD_01163 +1.0 1.7 SpoVR family stationary phase protein compare
ECD_01138 +1.0 1.0 anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein compare
ECD_01168 +1.0 0.7 lytic murein endotransglycosylase E compare
ECD_02369 +1.0 4.2 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02893 +1.0 6.2 antitoxin for MqsR toxin; transcriptional repressor compare
ECD_01929 +1.0 5.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
ECD_00883 +1.0 2.9 macrolide transporter membrane fusion protein (MFP) component compare
ECD_00461 +1.0 2.1 putative allantoin transporter compare
ECD_02478 +1.0 4.0 protein lysine acetyltransferase compare
ECD_00744 +1.0 3.1 malonyl-ACP O-methyltransferase, SAM-dependent compare
ECD_02416 +1.0 2.1 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_02244 +1.0 4.7 putative semialdehyde dehydrogenase compare
ECD_01042 +1.0 1.5 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit compare
ECD_04062 +0.9 3.6 L-ascorbate-specific enzyme IIA component of PTS compare
ECD_04088 +0.9 5.6 DUF1107 family protein compare
ECD_00375 +0.9 6.8 putative transporter compare
ECD_02044 +0.9 1.7 methionyl-tRNA synthetase compare
ECD_01236 +0.9 2.5 indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase compare
ECD_00399 +0.9 1.3 putative DNA-binding transcriptional regulator compare
ECD_02525 +0.9 1.9 DNA binding protein, nucleoid-associated compare
ECD_00415 +0.9 5.0 transcriptional repressor compare
ECD_02409 +0.9 6.9 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_01071 +0.9 2.6 flagellar hook assembly protein compare
ECD_02475 +0.9 3.3 putative methyltransferase compare
ECD_02424 +0.9 4.4 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent compare
ECD_02207 +0.9 2.7 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_01559 +0.9 1.3 oxidoreductase, membrane subunit compare
ECD_01671 +0.9 2.9 phosphoenolpyruvate synthase compare
ECD_02591 +0.9 7.5 RNA polymerase, sigma S (sigma 38) factor compare
ECD_00787 +0.9 4.6 ABC-F family putative regulatory ATPase compare
ECD_01795 +0.9 2.2 putative inner membrane protein compare
ECD_02204 +0.9 1.1 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_00680 +0.9 4.1 citrate synthase compare
ECD_00687 +0.9 2.2 succinyl-CoA synthetase, beta subunit compare
ECD_00765 +0.9 1.2 DUF1768 family protein compare
ECD_02776 +0.9 6.4 16S rRNA m(3)U1498 methyltransferase, SAM-dependent compare
ECD_00082 +0.9 1.7 RsmH methytransferase inhibitor compare
ECD_02882 +0.9 5.8 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter compare
ECD_02677 +0.9 7.4 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_00204 +0.9 7.0 putative membrane-bound lytic murein transglycosylase D compare
ECD_01917 +0.9 3.5 putrescine importer, low affinity compare
ECD_00671 +0.8 3.4 putative allophanate hydrolase, subunit 1 compare
ECD_04246 +0.8 6.0 16S rRNA m(2)G1207 methyltransferase, SAM-dependent compare
ECD_01830 +0.8 1.9 zinc ABC transporter permease compare
ECD_00456 +0.8 5.9 glyoxylate-inducible transcriptional repressor of all and gcl operons compare
ECD_01803 +0.8 2.0 free methionine-(R)-sulfoxide reductase compare
ECD_01959 +0.8 1.7 GDP-D-mannose dehydratase, NAD(P)-binding compare
ECD_04308 +0.8 1.5 uncharacterized protein compare
ECD_03015 +0.8 4.5 UPF0102 family protein compare
ECD_01794 +0.8 4.2 DUF2527 family heat-induced protein compare
ECD_01432 +0.8 2.5 formate dehydrogenase-N, alpha subunit, nitrate-inducible compare
ECD_01913 +0.8 1.2 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b compare
ECD_02110 +0.8 1.6 microcin C ABC transporter ATPase compare
ECD_01904 +0.8 3.0 IS2 transposase TnpB compare
ECD_02188 +0.8 2.1 O-succinylbenzoyl-CoA synthase compare
ECD_01122 +0.8 1.5 spermidine/putrescine ABC transporter permease compare
ECD_03093 +0.8 2.7 DUF1043 family inner membrane-anchored protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in balo experiments