| | gene | name | fitness | t score | description | |
|---|
| b0462 | acrB | -3.8 | -14.4 | multidrug efflux system protein (NCBI) | compare |
| b2392 | mntH | -3.7 | -6.6 | manganese transport protein MntH (NCBI) | compare |
| b0683 | fur | -3.6 | -2.4 | ferric uptake regulator (NCBI) | compare |
| b3035 | tolC | -3.4 | -8.1 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0463 | acrA | -3.4 | -9.9 | multidrug efflux system (NCBI) | compare |
| b4172 | hfq | -3.0 | -2.1 | RNA-binding protein Hfq (NCBI) | compare |
| b3631 | rfaG | -3.0 | -14.4 | glucosyltransferase I (NCBI) | compare |
| b3792 | wzxE | -2.8 | -8.0 | O-antigen translocase (NCBI) | compare |
| b4546 | ypeB | -2.8 | -2.3 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | -2.7 | -10.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2784 | relA | -2.7 | -9.7 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1187 | fadR | -2.6 | -4.9 | fatty acid metabolism regulator (NCBI) | compare |
| b3888 | yiiD | -2.6 | -9.2 | predicted acetyltransferase (NCBI) | compare |
| b0145 | dksA | -2.6 | -3.5 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2699 | recA | -2.5 | -1.7 | recombinase A (NCBI) | compare |
| b3842 | rfaH | -2.4 | -4.8 | transcriptional activator RfaH (NCBI) | compare |
| b2346 | vacJ | -2.3 | -7.8 | predicted lipoprotein (NCBI) | compare |
| b0222 | lpcA | -2.2 | -2.6 | phosphoheptose isomerase (NCBI) | compare |
| b3193 | yrbD | -2.2 | -9.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1236 | galU | -2.2 | -4.8 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2501 | ppk | -2.1 | -9.4 | polyphosphate kinase (NCBI) | compare |
| b3935 | priA | -2.1 | -3.7 | primosome assembly protein PriA (NCBI) | compare |
| b3163 | nlpI | -2.1 | -4.8 | hypothetical protein (NCBI) | compare |
| b0053 | surA | -2.1 | -3.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3052 | rfaE | -2.1 | -3.9 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3195 | yrbF | -2.1 | -10.2 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3194 | yrbE | -2.0 | -10.7 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3192 | yrbC | -2.0 | -8.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3632 | rfaQ | -2.0 | -15.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2512 | yfgL | -2.0 | -5.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3026 | qseC | -2.0 | -5.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0200 | gmhB | -2.0 | -1.3 | hypothetical protein (NCBI) | compare |
| b3191 | yrbB | -1.9 | -8.1 | orf, hypothetical protein (VIMSS) | compare |
| b3621 | rfaC | -1.9 | -3.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3619 | rfaD | -1.9 | -2.9 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0737 | tolQ | -1.9 | -2.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0471 | ybaB | -1.9 | -3.9 | hypothetical protein (NCBI) | compare |
| b3620 | rfaF | -1.8 | -3.1 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3341 | rpsG | -1.8 | -1.7 | 30S ribosomal protein S7 (NCBI) | compare |
| b1358 | ydaT | -1.8 | -1.8 | Rac prophage; predicted protein (NCBI) | compare |
| b3961 | oxyR | -1.8 | -9.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1830 | prc | -1.8 | -5.3 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0740 | tolB | -1.8 | -4.9 | translocation protein TolB precursor (NCBI) | compare |
| b1130 | phoP | -1.8 | -6.5 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b2808 | gcvA | -1.7 | -5.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1095 | fabF | -1.7 | -6.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1007 | b1007 | -1.7 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1129 | phoQ | -1.6 | -7.0 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1831 | proQ | -1.6 | -3.6 | putative solute/DNA competence effector (NCBI) | compare |
| b1085 | b1085 | -1.6 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1863 | ruvC | -1.6 | -3.5 | Holliday junction resolvase (NCBI) | compare |
| b2820 | recB | -1.5 | -1.8 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3398 | yrfF | -1.5 | -2.8 | predicted inner membrane protein (NCBI) | compare |
| b3199 | yrbK | -1.5 | -2.4 | hypothetical protein (NCBI) | compare |
| b3725 | pstB | -1.5 | -2.2 | phosphate transporter subunit (NCBI) | compare |
| b4201 | priB | -1.5 | -2.6 | primosomal replication protein N (NCBI) | compare |
| b0739 | tolA | -1.5 | -3.8 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1848 | yebG | -1.4 | -1.8 | conserved protein regulated by LexA (NCBI) | compare |
| b4000 | hupA | -1.4 | -4.1 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3863 | polA | -1.4 | -1.0 | DNA polymerase I (NCBI) | compare |
| b2531 | iscR | -1.4 | -1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3609 | secB | -1.4 | -3.3 | export protein SecB (NCBI) | compare |
| b4146 | yjeK | -1.4 | -3.5 | predicted lysine aminomutase (NCBI) | compare |
| b0738 | tolR | -1.4 | -2.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4515 | ybgT | -1.4 | -1.9 | hypothetical protein (NCBI) | compare |
| b3237 | argR | -1.3 | -4.0 | arginine repressor (NCBI) | compare |
| b3726 | pstA | -1.3 | -5.0 | phosphate transporter subunit (NCBI) | compare |
| b0178 | hlpA | -1.3 | -3.1 | periplasmic chaperone (NCBI) | compare |
| b3844 | fre | -1.3 | -4.7 | NAD(P)H-flavin reductase (NCBI) | compare |
| b3613 | yibP | -1.3 | -4.7 | putative membrane protein (VIMSS) | compare |
| b2293 | yfbT | -1.3 | -2.3 | putative phosphatase (VIMSS) | compare |
| b2494 | yfgC | -1.3 | -6.0 | predicted peptidase (NCBI) | compare |
| b3811 | xerC | -1.3 | -2.5 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b0623 | cspE | -1.3 | -2.2 | cold shock protein E (NCBI) | compare |
| b3205 | yhbJ | -1.2 | -3.4 | hypothetical protein (NCBI) | compare |
| b3727 | pstC | -1.2 | -5.2 | phosphate transporter subunit (NCBI) | compare |
| b3728 | pstS | -1.2 | -3.5 | phosphate transporter subunit (NCBI) | compare |
| b0688 | pgm | -1.2 | -2.9 | phosphoglucomutase (NCBI) | compare |
| b1860 | ruvB | -1.2 | -1.1 | Holliday junction DNA helicase B (NCBI) | compare |
| b3813 | uvrD | -1.2 | -6.7 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b0957 | ompA | -1.2 | -3.3 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b2822 | recC | -1.2 | -3.7 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b1299 | puuR | -1.1 | -3.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3627 | rfaI | -1.1 | -8.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3409 | feoB | -1.1 | -8.9 | ferrous iron transport protein B (NCBI) | compare |
| b2280 | nuoJ | -1.1 | -4.0 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2188 | yejM | -1.1 | -6.1 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0784 | moaD | -1.1 | -1.4 | molybdopterin synthase, small subunit (NCBI) | compare |
| b3644 | yicC | -1.1 | -4.3 | hypothetical protein (NCBI) | compare |
| b0741 | pal | -1.1 | -3.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3778 | rep | -1.1 | -5.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3784 | rfe | -1.1 | -7.4 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b4042 | dgkA | -1.1 | -2.6 | diacylglycerol kinase (NCBI) | compare |
| b0092 | ddlB | -1.1 | -3.7 | D-alanylalanine synthetase (NCBI) | compare |
| b0238 | gpt | -1.0 | -2.6 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b1109 | ndh | -1.0 | -3.2 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b2906 | visC | -1.0 | -4.2 | hypothetical protein (NCBI) | compare |
| b0406 | tgt | -1.0 | -4.9 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b2263 | yfbB | -1.0 | -1.3 | predicted peptidase (NCBI) | compare |
| b1729 | ydjN | -1.0 | -2.9 | predicted transporter (NCBI) | compare |
| b0430 | cyoC | -1.0 | -2.6 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b1837 | yebW | -1.0 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1493 | gadB | -1.0 | -1.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b0142 | folK | -0.9 | -1.1 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1591 | b1591 | -0.9 | -1.6 | putative oxidoreductase component (VIMSS) | compare |
| b1573 | ydfC | -0.9 | -1.7 | Qin prophage; predicted protein (RefSeq) | compare |
| b1861 | ruvA | -0.9 | -1.7 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1514 | lsrC | -0.9 | -1.7 | AI2 transporter (NCBI) | compare |
| b2198 | ccmD | -0.9 | -1.6 | cytochrome c biogenesis protein (NCBI) | compare |
| b2620 | smpB | -0.9 | -1.7 | SsrA-binding protein (NCBI) | compare |
| b4484 | cpxP | -0.9 | -3.7 | periplasmic protein combats stress (NCBI) | compare |
| b3410 | yhgG | -0.9 | -3.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2277 | nuoM | -0.9 | -3.8 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2948 | yqgE | -0.9 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3408 | feoA | -0.9 | -6.0 | ferrous iron transport protein A (NCBI) | compare |
| b1604 | ydgH | -0.9 | -2.4 | hypothetical protein (NCBI) | compare |
| b3463 | ftsE | -0.9 | -2.4 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0999 | cbpM | -0.9 | -2.2 | modulator of CbpA co-chaperone (NCBI) | compare |
| b3628 | rfaB | -0.9 | -6.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2741 | rpoS | -0.8 | -3.3 | RNA polymerase sigma factor (NCBI) | compare |
| b2295 | yfbV | -0.8 | -3.7 | hypothetical protein (NCBI) | compare |
| b1551 | b1551 | -0.8 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1263 | trpD | -0.8 | -1.7 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1709 | btuD | -0.8 | -1.0 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1175 | minD | -0.8 | -3.8 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3462 | ftsX | -0.8 | -3.1 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3625 | rfaY | -0.8 | -5.3 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1183 | umuD | -0.8 | -1.5 | DNA polymerase V, subunit D (NCBI) | compare |
| b3354 | yheU | -0.8 | -3.2 | hypothetical protein (NCBI) | compare |
| b1114 | mfd | -0.8 | -3.9 | transcription-repair coupling factor (NCBI) | compare |
| b0858 | ybjO | -0.8 | -1.2 | predicted inner membrane protein (NCBI) | compare |
| b3929 | rraA | -0.8 | -4.1 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1245 | oppC | -0.8 | -3.2 | oligopeptide transporter subunit (NCBI) | compare |
| b0429 | cyoD | -0.8 | -2.7 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b2261 | menC | -0.8 | -3.1 | O-succinylbenzoate synthase (NCBI) | compare |
| b0431 | cyoB | -0.8 | -4.7 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b3739 | atpI | -0.8 | -3.1 | membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS) | compare |
| b0825 | mipB | -0.8 | -2.5 | putative transaldolase (VIMSS) | compare |
| b0209 | yafD | -0.8 | -3.4 | hypothetical protein (NCBI) | compare |
| b3002 | yqhA | -0.7 | -1.3 | hypothetical protein (NCBI) | compare |
| b0263 | afuB | -0.7 | -1.6 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b0389 | yaiA | -0.7 | -2.0 | hypothetical protein (NCBI) | compare |
| b3042 | b3042 | -0.7 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4596 | yciZ | -0.7 | -1.1 | hypothetical protein (RefSeq) | compare |
| b3164 | pnp | -0.7 | -1.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3226 | yhcK | -0.7 | -3.1 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b3652 | recG | -0.7 | -4.5 | ATP-dependent DNA helicase (NCBI) | compare |
| b0630 | lipB | -0.7 | -1.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4595 | yciY | -0.7 | -1.2 | hypothetical protein (RefSeq) | compare |
| b4613 | dinQ | -0.7 | -1.1 | Damage inducible, function unknown (RefSeq) | compare |
| b1824 | yobF | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b4509 | ylcG | -0.7 | -2.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1677 | lpp | -0.7 | -1.6 | murein lipoprotein (NCBI) | compare |
| b3785 | wzzE | -0.7 | -4.7 | putative transport protein (VIMSS) | compare |
| b4406 | yaeP | -0.7 | -1.3 | hypothetical protein (NCBI) | compare |
| b1357 | ydaS | -0.7 | -0.9 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0641 | rlpB | -0.7 | -1.6 | minor lipoprotein (NCBI) | compare |
| b1658 | purR | -0.7 | -3.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0920 | ycbC | -0.7 | -2.5 | conserved inner membrane protein (NCBI) | compare |
| b1954 | dsrA | -0.7 | -1.7 | regulatory antisense RNA (NCBI) | compare |
| b0428 | cyoE | -0.7 | -3.1 | protoheme IX farnesyltransferase (NCBI) | compare |
| b0149 | mrcB | -0.7 | -4.9 | penicillin-binding protein 1b (NCBI) | compare |
| b2434 | b2434 | -0.7 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4438 | cyaR | -0.7 | -1.2 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b4648 | ysaC | -0.7 | -1.1 | no description | compare |
| b0998 | torD | -0.7 | -1.1 | chaperone protein TorD (NCBI) | compare |
| b1757 | b1757 | -0.7 | -2.4 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b1823 | cspC | -0.7 | -2.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b2007 | yeeX | -0.7 | -2.1 | conserved protein (RefSeq) | compare |
| b4698 | mgrR | -0.7 | -1.5 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b0440 | hupB | -0.7 | -2.7 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b2952 | yggT | -0.7 | -2.8 | predicted inner membrane protein (NCBI) | compare |
| b2614 | grpE | -0.7 | -0.9 | heat shock protein (NCBI) | compare |
| b1222 | narX | -0.7 | -2.1 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b2285 | nuoE | -0.7 | -1.2 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0890 | ftsK | -0.7 | -3.3 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b2824 | ygdB | -0.7 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2513 | yfgM | -0.7 | -2.7 | hypothetical protein (NCBI) | compare |
| b0088 | murD | -0.7 | -1.2 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b4480 | hdfR | -0.6 | -2.5 | transcriptional regulator HdfR (NCBI) | compare |
| b0432 | cyoA | -0.6 | -4.1 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b0958 | sulA | -0.6 | -3.3 | SOS cell division inhibitor (NCBI) | compare |
| b3021 | ygiT | -0.6 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1847 | yebF | -0.6 | -1.4 | predicted protein (RefSeq) | compare |
| b1325 | ycjG | -0.6 | -2.6 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b3391 | hofQ | -0.6 | -4.4 | predicted fimbrial transporter (NCBI) | compare |
| b1141 | ymfG | -0.6 | -2.3 | e14 prophage; predicted excisionase (NCBI) | compare |
| b2930 | yggF | -0.6 | -1.7 | predicted hexoseP phosphatase (NCBI) | compare |
| b3228 | sspB | -0.6 | -1.7 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b1057 | yceJ | -0.6 | -3.9 | predicted cytochrome b561 (NCBI) | compare |
| b4505 | insX | -0.6 | -1.0 | predicted IS protein (RefSeq) | compare |
| b2450 | yffS | -0.6 | -1.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4393 | trpR | -0.6 | -3.1 | Trp operon repressor (NCBI) | compare |
| b1227 | narI | -0.6 | -3.0 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b0118 | acnB | -0.6 | -1.7 | aconitate hydratase (NCBI) | compare |
| b0427 | yajR | -0.6 | -3.7 | putative transport protein (VIMSS) | compare |
| b1346 | ydaQ | -0.6 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2058 | wcaB | -0.6 | -0.7 | predicted acyl transferase (NCBI) | compare |
| b1251 | yciI | -0.6 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3651 | trmH | -0.6 | -3.2 | tRNA (Guanosine-2'-O-)-methyltransferase (NCBI) | compare |