Experiment set4IT010 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

200 most detrimental genes:

  gene name fitness t score description  
ECD_02033 +3.1 8.4 hypothetical protein compare
ECD_01487 +3.0 14.4 phage N15 gp48-like protein compare
ECD_01250 +2.8 6.8 DNA topoisomerase I, omega subunit compare
ECD_01556 +2.7 2.2 putative selenate reductase, periplasmic compare
ECD_01281 +2.7 9.7 regulatory protein for phage-shock-protein operon compare
ECD_01810 +2.6 1.8 DUF2511 family protein compare
ECD_01310 +2.5 3.5 stress-induced protein compare
ECD_01160 +2.5 11.1 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02024 +2.5 7.6 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_t00039 +2.5 6.5 tRNA-Ala compare
ECD_01719 +2.4 2.2 TVP38/TMEM64 family inner membrane protein compare
ECD_02021 +2.4 11.9 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_01897 +2.4 4.3 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01081 +2.4 8.8 uncharacterized protein compare
ECD_01084 +2.4 10.8 DUF177 family protein compare
ECD_01059 +2.3 3.6 lipoprotein, DUF1439 family compare
ECD_03556 +2.2 3.5 ilvB operon leader peptide compare
ECD_01713 +2.2 3.5 succinylglutamate desuccinylase compare
ECD_t00008 +2.2 8.4 tRNA-Gln compare
ECD_t00038 +2.2 5.5 tRNA-Arg compare
ECD_01489 +2.1 5.9 transcriptional repressor of multiple antibiotic resistance compare
ECD_02179 +2.1 15.2 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_01625 +2.1 3.4 murein DD-endopeptidase, space-maker hydrolase compare
ECD_01619 +2.1 8.4 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_01957 +2.1 2.2 GDP-mannose mannosyl hydrolase compare
ECD_01082 +2.0 12.1 23S rRNA pseudouridine(955,2504,2580) synthase compare
ECD_01681 +2.0 4.3 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01702 +2.0 3.9 chito-oligosaccharide deacetylase compare
ECD_01276 +2.0 9.1 repressor for the divergent puu operons, putrescine inducible compare
ECD_01611 +1.9 12.8 outer membrane lipoprotein compare
ECD_02097 +1.9 9.8 fructose-1-phosphate kinase compare
ECD_01557 +1.9 2.6 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_02178 +1.9 9.6 putative LPS core heptose(II)-phosphate phosphatase compare
ECD_04342 +1.9 13.0 hypothetical protein compare
ECD_00509 +1.8 5.8 DLP12 prophage; putative lipoprotein compare
ECD_01875 +1.8 11.9 tyrosine transporter compare
ECD_01459 +1.8 1.4 putative oxidoreductase compare
ECD_00781 +1.8 10.9 outer membrane protein X compare
ECD_01121 +1.7 4.4 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_02181 +1.7 13.5 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_01737 +1.7 1.2 nicotinamidase/pyrazinamidase compare
ECD_02278 +1.7 1.9 multidrug resistance efflux pump membrane fusion protein compare
ECD_01960 +1.7 3.9 putative acyl transferase compare
ECD_02180 +1.7 12.4 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_01302 +1.6 2.8 L-Ala-D/L-Glu epimerase compare
ECD_01802 +1.6 6.7 RNA chaperone, putative ProP translation regulator compare
ECD_01770 +1.6 2.6 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_01063 +1.6 3.5 UPF0502 family protein compare
ECD_00311 +1.5 5.5 regulator protein that represses frmRAB operon compare
ECD_02090 +1.5 2.3 nucleoside permease compare
ECD_02018 +1.5 4.8 galactitol-specific enzyme IIC component of PTS compare
ECD_02289 +1.5 8.8 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_01930 +1.5 8.5 UDP-glucose 6-dehydrogenase compare
ECD_01826 +1.5 4.6 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_00392 +1.5 7.9 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01912 +1.5 2.2 DNA gyrase inhibitor compare
ECD_02523 +1.5 10.1 tributyltin-inducible repressor of ygaVP compare
ECD_01629 +1.5 3.5 transcriptional repressor, hypoxanthine-binding compare
ECD_00961 +1.5 9.9 outer membrane protein A (3a compare
ECD_01245 +1.5 6.4 23S rRNA pseudouridine(2605) synthase compare
ECD_02416 +1.5 3.7 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_01844 +1.5 1.5 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01906 +1.5 2.2 hypothetical protein compare
ECD_01381 +1.4 4.7 OPG biosynthetic periplasmic protein compare
ECD_00077 +1.4 7.6 leu operon leader peptide compare
ECD_01828 +1.4 3.1 zinc ABC transporter periplasmic binding protein compare
ECD_00001 +1.4 2.1 thr operon leader peptide compare
ECD_01164 +1.4 2.8 D-amino acid dehydrogenase compare
ECD_00901 +1.4 1.4 putative isochorismatase family hydrolase compare
ECD_01240 +1.4 2.1 PHP domain protein compare
ECD_01161 +1.4 3.3 sodium:proton antiporter compare
ECD_00574 +1.4 6.1 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02105 +1.3 11.2 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_00381 +1.3 8.0 cytochrome o ubiquinol oxidase subunit III compare
ECD_01080 +1.3 5.4 endoribonuclease; RNA-binding protein compare
ECD_02085 +1.3 9.8 lysine transporter compare
ECD_02484 +1.3 8.2 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_02276 +1.3 8.6 D-serine dehydratase compare
ECD_01736 +1.3 1.3 cytoplasmic L-asparaginase 1 compare
ECD_02686 +1.3 11.1 diaminopimelate decarboxylase, PLP-binding compare
ECD_02182 +1.3 4.7 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_01854 +1.2 1.2 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_01097 +1.2 3.9 fused glucose-specific PTS enzymes: IIB component/IIC component compare
ECD_t00054 +1.2 6.6 tRNA-Gly compare
ECD_01492 +1.2 1.2 cysteine and O-acetyl-L-serine efflux system compare
ECD_00382 +1.2 9.7 cytochrome o ubiquinol oxidase subunit I compare
ECD_00112 +1.2 8.5 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_02505 +1.2 9.2 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_t00011 +1.2 2.9 tRNA-Gln compare
ECD_t00085 +1.2 6.0 tRNA-Leu compare
ECD_02423 +1.2 6.2 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_00882 +1.1 4.7 DUF535 family protein compare
ECD_01562 +1.1 0.8 putative dethiobiotin synthetase compare
ECD_04388 +1.1 3.6 putative membrane-bound BasS regulator compare
ECD_01836 +1.1 4.3 dihydroneopterin triphosphate pyrophosphatase compare
ECD_00970 +1.1 3.8 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01621 +1.1 0.8 glyoxalase I, Ni-dependent compare
ECD_01904 +1.1 3.8 IS2 transposase TnpB compare
ECD_02478 +1.1 4.8 protein lysine acetyltransferase compare
ECD_01289 +1.1 1.3 putative sugar ABC transporter permease compare
ECD_01624 +1.1 2.5 glutaredoxin-4 compare
ECD_03118 +1.1 7.2 tRNA-dihydrouridine synthase B compare
ECD_02390 +1.1 7.0 uracil phosphoribosyltransferase compare
ECD_02404 +1.1 1.7 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02677 +1.1 9.7 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_01589 +1.1 1.3 transcriptional repressor of Mal regulon compare
ECD_03696 +1.1 1.4 DUF2628 family putative inner membrane protein compare
ECD_01168 +1.1 0.7 lytic murein endotransglycosylase E compare
ECD_00434 +1.1 1.6 putative DNA-binding transcriptional regulator compare
ECD_00061 +1.1 10.0 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_02224 +1.1 2.2 putative NUDIX hydrolase compare
ECD_04293 +1.1 2.7 inhibitor of glucose uptake compare
ECD_01799 +1.1 1.1 putative transporter compare
ECD_00383 +1.0 8.0 cytochrome o ubiquinol oxidase subunit II compare
ECD_01703 +1.0 1.1 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_02098 +1.0 2.5 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_02482 +1.0 7.0 protein disaggregation chaperone compare
ECD_01824 +1.0 3.7 putative DNA-binding transcriptional regulator compare
ECD_02369 +1.0 3.8 BamABCDE complex OM biogenesis lipoprotein compare
ECD_00032 +1.0 1.7 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_00671 +1.0 3.6 putative allophanate hydrolase, subunit 1 compare
ECD_01825 +1.0 2.4 pyruvate kinase II compare
ECD_01727 +1.0 1.3 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_00417 +1.0 4.7 DUF2496 family protein compare
ECD_02840 +1.0 1.9 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_01021 +1.0 3.9 deferrrochelatase, periplasmic compare
ECD_01929 +1.0 5.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
ECD_01309 +1.0 2.5 DUF2534 family putative inner membrane protein compare
ECD_01124 +1.0 1.7 spermidine/putrescine ABC transporter ATPase compare
ECD_01803 +1.0 2.8 free methionine-(R)-sulfoxide reductase compare
ECD_01579 +1.0 3.0 inhibitor of replication at Ter, DNA-binding protein compare
ECD_02096 +1.0 3.9 fused fructose-specific PTS enzymes: IIBcomponent/IIC components compare
ECD_01020 +1.0 2.8 inactive ferrous ion transporter EfeUOB compare
ECD_00380 +1.0 1.3 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02893 +1.0 6.4 antitoxin for MqsR toxin; transcriptional repressor compare
ECD_01794 +1.0 3.7 DUF2527 family heat-induced protein compare
ECD_00082 +1.0 2.5 RsmH methytransferase inhibitor compare
ECD_00443 +0.9 4.1 DnaK co-chaperone, thioredoxin-like protein compare
ECD_02244 +0.9 3.1 putative semialdehyde dehydrogenase compare
ECD_01396 +0.9 1.2 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_01263 +0.9 2.5 ribonuclease II compare
ECD_00379 +0.9 6.6 protoheme IX farnesyltransferase compare
ECD_00947 +0.9 1.3 putative fimbrial-like adhesin protein compare
ECD_02475 +0.9 4.7 putative methyltransferase compare
ECD_00204 +0.9 7.5 putative membrane-bound lytic murein transglycosylase D compare
ECD_00689 +0.9 2.3 transcriptional repressor for the mannosyl-D-glycerate catabolic operon compare
ECD_02659 +0.9 6.0 glycine cleavage system transcriptional activator; autorepressor compare
ECD_01049 +0.9 1.3 putative drug efflux system protein compare
ECD_02882 +0.9 6.1 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter compare
ECD_01671 +0.9 3.1 phosphoenolpyruvate synthase compare
ECD_00807 +0.9 0.8 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_01105 +0.9 3.1 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_00375 +0.9 6.4 putative transporter compare
ECD_00606 +0.9 4.3 ribosomal silencing factor compare
ECD_00406 +0.9 3.6 excision repair protein, alkyltransferase-like protein ATL compare
ECD_00093 +0.9 5.6 D-alanine:D-alanine ligase compare
ECD_00130 +0.9 2.0 aspartate 1-decarboxylase compare
ECD_01374 +0.9 1.6 cytochrome b561 compare
ECD_04246 +0.9 5.1 16S rRNA m(2)G1207 methyltransferase, SAM-dependent compare
ECD_00752 +0.9 1.1 molybdopterin synthase, large subunit compare
ECD_01071 +0.9 2.3 flagellar hook assembly protein compare
ECD_00456 +0.9 6.9 glyoxylate-inducible transcriptional repressor of all and gcl operons compare
ECD_04084 +0.9 1.6 DUF24 family HxlR-type putative transcriptional regulator compare
ECD_02539 +0.8 6.1 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_02776 +0.8 6.1 16S rRNA m(3)U1498 methyltransferase, SAM-dependent compare
ECD_00744 +0.8 3.5 malonyl-ACP O-methyltransferase, SAM-dependent compare
ECD_01917 +0.8 3.4 putrescine importer, low affinity compare
ECD_01793 +0.8 2.7 stress protein, member of the CspA-family compare
ECD_02086 +0.8 3.9 putative DNA-binding transcriptional regulator compare
ECD_01581 +0.8 4.0 fumarate hydratase (fumarase A), aerobic Class I compare
ECD_01739 +0.8 2.5 putative DNA-binding transcriptional regulator compare
ECD_00702 +0.8 3.0 periplasmic TolA-binding protein compare
ECD_02129 +0.8 1.8 quinol dehydrogenase, electron source for NapAB compare
ECD_01390 +0.8 1.2 IS609 transposase B compare
ECD_00026 +0.8 2.6 hypothetical protein compare
ECD_01789 +0.8 0.9 mannose-specific enzyme IID component of PTS compare
ECD_02183 +0.8 5.8 4-amino-4-deoxy-L-arabinose transferase compare
ECD_02017 +0.8 2.6 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding compare
ECD_00849 +0.8 1.6 putative DNA-invertase compare
ECD_00787 +0.8 4.2 ABC-F family putative regulatory ATPase compare
ECD_01435 +0.8 0.8 putative DNA-binding transcriptional regulator compare
ECD_00911 +0.8 3.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_01403 +0.8 1.6 DUF2526 family protein compare
ECD_01795 +0.8 2.4 putative inner membrane protein compare
ECD_00643 +0.8 4.2 acyl-CoA esterase compare
ECD_01868 +0.8 1.7 L-arabinose ABC transporter ATPase compare
ECD_02409 +0.8 6.0 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_01238 +0.8 1.7 component I of anthranilate synthase compare
ECD_00670 +0.8 1.5 NIF3 family metal-binding protein compare
ECD_02591 +0.8 6.4 RNA polymerase, sigma S (sigma 38) factor compare
ECD_02424 +0.7 2.8 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent compare
ECD_02100 +0.7 1.7 UPF0153 cysteine cluster protein compare
ECD_00235 +0.7 2.0 DNA-binding transcriptional regulator compare
ECD_00939 +0.7 1.0 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_01696 +0.7 0.9 2-deoxyglucose-6-P phosphatase compare
ECD_00415 +0.7 4.0 transcriptional repressor compare
ECD_01122 +0.7 1.5 spermidine/putrescine ABC transporter permease compare
ECD_01060 +0.7 0.7 glutaredoxin 2 (Grx2) compare
ECD_01133 +0.7 2.3 23S rRNA pseudouridine(2457) synthase compare
ECD_00883 +0.7 2.7 macrolide transporter membrane fusion protein (MFP) component compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in balo experiments