Experiment set4IT009 for Pseudomonas putida KT2440

Compare to:

LB with Geraniol 1 vol%

200 most important genes:

  gene name fitness t score description  
PP_1386 -6.3 -4.4 Probable efflux pump periplasmic linker TtgA compare
PP_1385 -5.9 -14.2 Probable efflux pump membrane transporter TtgB compare
PP_0962 -5.6 -3.9 toluene-tolerance protein compare
PP_1384 -5.4 -9.0 Probable efflux pump outer membrane protein TtgC compare
PP_0961 -5.2 -6.2 toluene tolerance protein compare
PP_2163 -4.9 -4.8 VacJ lipoprotein compare
PP_1428 -4.8 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_0959 -4.3 -4.2 phospholipid ABC transporter compare
PP_4943 -4.2 -2.9 putative Glycosyl transferase compare
PP_0435 -4.2 -16.0 Peptidase, M23/M37 family compare
PP_0960 -4.1 -6.9 phospholipid ABC transporter binding protein compare
PP_5328 -4.1 -4.9 putative phosphate transport system permease protein compare
PP_0958 -4.1 -5.6 phospholipid ABC transporter ATP-binding subunit compare
PP_4937 -4.0 -2.8 toluene tolerance protein compare
PP_4342 -3.8 -3.7 flagellar synthesis regulator, putative ATPase compare
PP_5329 -3.8 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0691 -3.6 -2.5 Glutamate 5-kinase compare
PP_3821 -3.4 -11.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3649 -3.2 -4.4 Transcriptional regulator, GntR family compare
PP_0856 -3.2 -2.2 conserved lipoprotein of unknown function compare
PP_4940 -3.1 -9.2 Putative glycosyltransferase compare
PP_0063 -3.0 -4.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4722 -3.0 -5.6 Transcription elongation factor GreA compare
PP_4262 -2.8 -4.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0852 -2.7 -4.7 Transcriptional regulator, Cro/CI family compare
PP_5748 -2.7 -3.1 cytochrome c heme lyase subunit compare
PP_5327 -2.6 -6.7 putative phosphate ABC transporter, permease subunit compare
PP_1489 -2.6 -2.8 CheW domain protein compare
PP_5045 -2.6 -3.9 tRNA sulfurtransferase compare
PP_1994 -2.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1719 -2.4 -8.9 Tail-specific protease prc compare
PP_t49 -2.4 -5.0 tRNA-Met compare
PP_1468 -2.4 -3.2 Tyrosine recombinase XerD compare
PP_1650 -2.4 -15.6 Sensor protein GacS compare
PP_4261 -2.4 -7.4 cation-transporting P-type ATPase compare
PP_4836 -2.4 -4.2 conserved exported protein of unknown function compare
PP_4994 -2.3 -4.5 conserved protein of unknown function compare
PP_4942 -2.3 -3.0 conserved protein of unknown function compare
PP_4099 -2.3 -19.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0119 -2.3 -4.2 putative zinc uptake regulation protein ZUR compare
PP_1490 -2.3 -9.2 Probable biofilm formation methyltransferase WspC compare
PP_4723 -2.2 -10.2 Carbamoyl-phosphate synthase large chain compare
PP_3474 -2.2 -3.5 putative Curli fiber protein CsgE compare
PP_4263 -2.2 -5.4 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1494 -2.1 -7.8 Response regulator/GGDEF domain protein compare
PP_2402 -2.1 -3.1 putative Sensor histidine kinase compare
PP_4373 -2.1 -11.2 Transcriptional regulator FleQ compare
PP_5429 -2.1 -5.9 protein of unknown function compare
PP_4519 -2.0 -10.2 Agglutination protein compare
PP_1898 -2.0 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4964 -2.0 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1733 -2.0 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1319 -1.9 -5.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0173 -1.9 -7.4 putative transcriptional factor-related protein compare
PP_4250 -1.9 -10.6 cytochrome c oxidase subunit I, cbb3-type compare
PP_5232 -1.9 -2.7 conserved protein of unknown function compare
PP_5331 -1.9 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1318 -1.9 -7.7 Cytochrome b compare
PP_4253 -1.9 -4.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4693 -1.8 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_4880 -1.8 -5.6 exoribonuclease R compare
PP_0168 -1.8 -14.3 putative surface adhesion protein compare
PP_0165 -1.8 -12.3 GGDEF domain protein compare
PP_2976 -1.8 -1.7 putative transposase compare
PP_0174 -1.8 -9.6 conserved protein of unknown function compare
PP_3453 -1.8 -7.1 putative Sensor protein RstB compare
PP_4874 -1.8 -2.0 50S ribosomal protein L9 compare
PP_4804 -1.7 -2.6 RlpA-like lipoprotein compare
PP_0888 -1.7 -3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0167 -1.7 -12.7 Toxin secretion ATP-binding protein compare
PP_0166 -1.7 -9.6 HlyD family secretion protein compare
PP_0346 -1.7 -7.3 putative Heptose kinase WapQ compare
PP_0117 -1.7 -5.9 Zn(2+) ABC transporter - permease subunit compare
PP_1317 -1.6 -5.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2160 -1.6 -4.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4999 -1.6 -1.8 dihydroorotase-like protein compare
PP_3506 -1.6 -3.4 Magnesium chelatase, subunit ChII compare
PP_0111 -1.6 -7.5 Electron transport protein SCO1/SenC compare
PP_1488 -1.6 -8.0 Methyl-accepting chemotaxis transducer compare
PP_4724 -1.6 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_1655 -1.6 -8.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0345 -1.6 -4.2 putative Heptose kinase WapP compare
PP_1783 -1.6 -1.8 dTDP-glucose pyrophosphorylase compare
PP_0833 -1.6 -2.0 queuine tRNA-ribosyltransferase compare
PP_4265 -1.6 -3.4 DNA-binding transcriptional dual regulator compare
PP_1663 -1.5 -8.0 conserved exported protein of unknown function compare
PP_1142 -1.5 -1.4 conserved protein of unknown function compare
PP_4260 -1.5 -5.9 conserved protein of unknown function compare
PP_1492 -1.5 -4.9 Sensor histidine kinase/response regulator compare
PP_5217 -1.5 -10.6 Polyphosphate kinase compare
PP_1237 -1.5 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5309 -1.5 -5.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3539 -1.5 -3.2 putative Transcriptional regulator compare
PP_4787 -1.5 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4993 -1.5 -4.3 Glutathione synthetase compare
PP_0126 -1.5 -3.4 Cytochrome c4 compare
PP_2413 -1.5 -8.3 GGDEF family protein compare
PP_3454 -1.4 -4.4 putative transcriptional regulatory protein compare
PP_4273 -1.4 -1.9 Transcriptional regulator, MerR family compare
PP_4251 -1.4 -4.4 cytochrome c oxidase subunit, cbb3-type compare
PP_1644 -1.4 -4.3 NAD(P)H dehydrogenase (quinone) compare
PP_3105 -1.4 -2.8 conserved membrane protein of unknown function compare
PP_5058 -1.4 -5.2 Carboxy-terminal-processing protease compare
PP_4471 -1.4 -3.8 Magnesium transporter compare
PP_1643 -1.4 -4.5 conserved membrane protein of unknown function compare
PP_0672 -1.4 -5.3 Sensory box protein compare
PP_0725 -1.3 -3.9 conserved hypothetical TPR repeat protein compare
PP_4811 -1.3 -4.0 Gamma-glutamyl phosphate reductase compare
PP_5095 -1.3 -1.3 pyrroline-5-carboxylate reductase compare
PP_5338 -1.3 -2.4 aspartate ammonia-lyase compare
PP_4891 -1.3 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4697 -1.3 -2.9 poly(A) polymerase compare
PP_4785 -1.3 -4.3 conserved exported protein of unknown function compare
PP_2256 -1.3 -3.4 Transcriptional regulator, Cro/CI family compare
PP_0368 -1.3 -7.5 putative Acyl-CoA dehydrogenase compare
PP_0058 -1.3 -9.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2456 -1.3 -2.5 D-ribose ABC transporter - permease subunit compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_4217 -1.3 -9.3 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_t12 -1.2 -1.5 tRNA-Thr compare
PP_1215 -1.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4264 -1.2 -6.5 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1656 -1.2 -6.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_3924 -1.2 -2.8 conserved protein of unknown function compare
PP_4936 -1.2 -4.3 O-antigen polymerase compare
PP_5162 -1.2 -4.0 conserved exported protein of unknown function compare
PP_3505 -1.2 -1.5 conserved protein of unknown function compare
PP_0984 -1.2 -4.6 conserved membrane protein of unknown function compare
PP_4781 -1.2 -9.3 Sensor histidine kinase compare
PP_1598 -1.2 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_1430 -1.2 -6.3 putative periplasmic serine endoprotease DegP-like compare
PP_0887 -1.1 -5.0 Sensor histidine kinase compare
PP_2003 -1.1 -3.0 conserved protein of unknown function compare
PP_5717 -1.1 -2.3 conserved protein of unknown function compare
PP_1232 -1.1 -4.2 conserved exported protein of unknown function compare
PP_0848 -1.1 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2044 -1.1 -1.9 conserved inner membrane protein of unknown function compare
PP_4517 -1.1 -1.5 conserved protein of unknown function compare
PP_1099 -1.1 -2.5 Cold shock protein CapB compare
PP_2387 -1.1 -2.4 conserved protein of unknown function compare
PP_5053 -1.1 -4.1 Protein-export protein SecB compare
PP_0120 -1.1 -3.7 putative zinc ABC transporter compare
PP_1293 -1.1 -1.4 molybdopterin synthase small subunit compare
PP_4271 -1.1 -1.2 conserved protein of unknown function compare
PP_5706 -1.1 -1.8 Sec translocation complex - SecG subunit compare
PP_0599 -1.1 -7.7 paraquat-inducible protein B compare
PP_0855 -1.1 -2.5 conserved protein of unknown function compare
PP_1734 -1.1 -1.8 Probable septum site-determining protein MinC compare
PP_1906 -1.1 -3.1 ribosomal large subunit pseudouridine synthase C compare
PP_3999 -1.1 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2372 -1.1 -6.1 putative Periplasmic sugar-binding protein compare
PP_3035 -1.1 -2.0 conserved protein of unknown function compare
PP_1113 -1.1 -6.1 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1736 -1.1 -3.0 conserved protein of unknown function compare
PP_4670 -1.0 -6.1 diguanylate cyclase compare
PP_5310 -1.0 -4.1 junction-specific ATP-dependent DNA helicase compare
PP_4892 -1.0 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2327 -1.0 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1778 -1.0 -4.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1645 -1.0 -2.9 putative enzyme compare
PP_2442 -1.0 -1.9 conserved protein of unknown function, DUF480 family compare
PP_0282 -1.0 -4.7 L-arginine ABC transporter - periplasmic binding subunit compare
PP_2107 -1.0 -1.6 conserved protein of unknown function compare
PP_2634 -1.0 -3.0 putative Cellulose synthase compare
PP_4478 -1.0 -5.4 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_4721 -1.0 -2.8 conserved membrane protein of unknown function compare
PP_1553 -1.0 -1.9 conserved protein of unknown function compare
PP_4938 -1.0 -5.1 putative Glycosyl transferase compare
PP_5448 -1.0 -2.5 conserved protein of unknown function compare
PP_5295 -1.0 -2.1 conserved protein of unknown function compare
PP_5604 -1.0 -1.4 putative subtilisin-like serine protease compare
PP_1609 -1.0 -2.0 conserved protein of unknown function compare
PP_5093 -0.9 -1.3 twitching motility protein compare
PP_0598 -0.9 -6.0 paraquat-inducible protein A compare
PP_4223 -0.9 -0.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2748 -0.9 -2.4 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4837 -0.9 -3.0 conserved protein of unknown function compare
PP_0872 -0.9 -4.1 Peptide chain release factor 3 compare
PP_2356 -0.9 -4.6 putative Phytochrome family protein compare
PP_2883 -0.9 -1.5 conserved protein of unknown function compare
PP_1878 -0.9 -4.1 conserved protein of unknown function compare
PP_2665 -0.9 -2.5 Glycerol metabolism activator compare
PP_2932 -0.9 -4.8 Amidase family protein compare
PP_4961 -0.9 -0.9 putative Lipoprotein compare
PP_1632 -0.9 -0.6 conserved protein of unknown function compare
PP_5354 -0.9 -4.5 conserved protein of unknown function compare
PP_4707 -0.9 -2.3 OsmY-related protein compare
PP_2269 -0.9 -2.9 putative N-acetylmuramoyl-L-alanine amidase compare
PP_5745 -0.9 -4.1 paraquat-inducible protein A compare
PP_4895 -0.9 -1.8 tRNA dimethylallyltransferase compare
PP_5227 -0.9 -4.5 diaminopimelate decarboxylase compare
PP_5699 -0.9 -2.2 putative iron uptake protein compare
PP_1238 -0.9 -4.0 putative Lipoprotein compare
PP_0504 -0.9 -3.2 Outer membrane protein OprG compare
PP_2336 -0.9 -2.4 aconitate hydratase 1 compare
PP_5693 -0.9 -2.5 conserved protein of unknown function compare
PP_4470 -0.9 -2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_0352 -0.9 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4684 -0.9 -4.0 conserved protein of unknown function with kinase-like domain compare
PP_4977 -0.9 -5.2 5,10-methylenetetrahydrofolate reductase compare


Specific Phenotypes

For 30 genes in this experiment

For stress Geraniol in Pseudomonas putida KT2440

For stress Geraniol across organisms