Experiment set4IT009 for Pseudomonas putida KT2440

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LB with Geraniol 1 vol%

Group: stress
Media: LB + Geraniol (1 vol%)
Culturing: Putida_ML5, 48 well microplate; Tecan Safire, Aerobic, at 30 (C), shaken=orbital
Growth: about 5.0 generations
By: Mitch on 12/26/16
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 30 genes in this experiment

For stress Geraniol in Pseudomonas putida KT2440

For stress Geraniol across organisms

SEED Subsystems

Subsystem #Specific
Flagellar motility 3
Flagellum 3
Bacterial Chemotaxis 2
ATP-dependent RNA helicases, bacterial 1
Biogenesis of cbb3-type cytochrome c oxidases 1
Biogenesis of cytochrome c oxidases 1
Folate Biosynthesis 1
Glycine Biosynthesis 1
Glycine and Serine Utilization 1
LMPTP YwlE cluster 1
Orphan regulatory proteins 1
Oxidative stress 1
Photorespiration (oxidative C2 cycle) 1
Putative hemin transporter 1
Serine-glyoxylate cycle 1
Serine Biosynthesis 1
Terminal cytochrome C oxidases 1
cAMP signaling in bacteria 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
glycine biosynthesis I 1 1 1
arsenite to oxygen electron transfer 2 1 1
dTMP de novo biosynthesis (mitochondrial) 3 3 1
glycine degradation 3 3 1
CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis 3 1 1
arsenite to oxygen electron transfer (via azurin) 3 1 1
superpathway of L-serine and glycine biosynthesis I 4 4 1
aerobic respiration II (cytochrome c) (yeast) 4 3 1
aerobic respiration I (cytochrome c) 4 3 1
glycine betaine degradation II (mammalian) 4 1 1
folate polyglutamylation 5 4 1
Fe(II) oxidation 6 3 1
glycine betaine degradation III 7 7 1
glycine betaine degradation I 8 6 1
superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis 8 1 1
folate transformations III (E. coli) 9 9 1
photorespiration I 9 6 1
photorespiration III 9 6 1
photorespiration II 10 7 1
folate transformations II (plants) 11 10 1
folate transformations I 13 9 1
formaldehyde assimilation I (serine pathway) 13 7 1
purine nucleobases degradation II (anaerobic) 24 16 1