Experiment set4IT009 for Escherichia coli BW25113
LB with limonene 5 vol%
Group: stressMedia: LB + limonene (5 vol%)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Mitch on 3/15/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 14 genes in this experiment
For stress limonene in Escherichia coli BW25113
For stress limonene across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Auxin degradation | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
| Transport of Manganese | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Methane metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Phenylpropanoid biosynthesis
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| betanidin degradation | 1 | 1 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| baicalein degradation (hydrogen peroxide detoxification) | 2 | 1 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| luteolin triglucuronide degradation | 4 | 3 | 1 |
| cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) | 4 | 3 | 1 |
| xanthommatin biosynthesis | 4 | 1 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 2 |
| sesamin biosynthesis | 8 | 1 | 1 |
| justicidin B biosynthesis | 10 | 1 | 1 |
| matairesinol biosynthesis | 10 | 1 | 1 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |