Experiment set4IT007 for Pseudomonas putida KT2440

Compare to:

LB with Cholinium alpha ketoglutarate 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_1783 -2.4 -1.7 dTDP-glucose pyrophosphorylase compare
PP_0393 -2.1 -3.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0856 -2.0 -4.0 conserved lipoprotein of unknown function compare
PP_1994 -2.0 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_0846 -1.8 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_1906 -1.7 -4.2 ribosomal large subunit pseudouridine synthase C compare
PP_0025 -1.7 -2.1 hypothetical protein compare
PP_4999 -1.6 -1.7 dihydroorotase-like protein compare
PP_5717 -1.6 -2.4 conserved protein of unknown function compare
PP_4874 -1.6 -2.1 50S ribosomal protein L9 compare
PP_4930 -1.6 -4.4 putative small multidrug resistance protein compare
PP_3821 -1.5 -8.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4723 -1.5 -8.6 Carbamoyl-phosphate synthase large chain compare
PP_4263 -1.5 -5.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0719 -1.4 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3541 -1.4 -3.5 Transporter, MgtC family compare
PP_1428 -1.4 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_1733 -1.3 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0888 -1.3 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_0063 -1.3 -3.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5748 -1.3 -2.3 cytochrome c heme lyase subunit compare
PP_5045 -1.3 -3.3 tRNA sulfurtransferase compare
PP_4943 -1.2 -2.3 putative Glycosyl transferase compare
PP_0164 -1.2 -5.9 conserved protein of unknown function compare
PP_4697 -1.2 -2.8 poly(A) polymerase compare
PP_0963 -1.2 -2.4 putative BolA family protein compare
PP_4993 -1.2 -3.5 Glutathione synthetase compare
PP_2429 -1.2 -1.2 putative Membrane protein compare
PP_2144 -1.2 -3.5 Transcriptional regulator, TetR family compare
PP_3649 -1.2 -3.2 Transcriptional regulator, GntR family compare
PP_0691 -1.2 -2.7 Glutamate 5-kinase compare
PP_0872 -1.2 -4.8 Peptide chain release factor 3 compare
PP_4880 -1.2 -5.5 exoribonuclease R compare
PP_4726 -1.1 -1.4 Chaperone protein DnaJ compare
PP_3245 -1.1 -1.8 conserved protein of unknown function compare
PP_0959 -1.1 -1.9 phospholipid ABC transporter compare
PP_0833 -1.1 -1.9 queuine tRNA-ribosyltransferase compare
PP_5053 -1.1 -4.3 Protein-export protein SecB compare
PP_2378 -1.1 -2.1 Fe/S biogenesis protein NfuA compare
PP_0630 -1.0 -1.4 DNA gyrase inhibitor YacG compare
PP_2442 -1.0 -1.5 conserved protein of unknown function, DUF480 family compare
PP_1553 -1.0 -2.3 conserved protein of unknown function compare
PP_5162 -1.0 -4.0 conserved exported protein of unknown function compare
PP_4532 -1.0 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1734 -1.0 -2.2 Probable septum site-determining protein MinC compare
PP_1099 -1.0 -2.4 Cold shock protein CapB compare
PP_3098 -1.0 -1.1 conserved protein of unknown function compare
PP_4264 -1.0 -5.6 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1198 -1.0 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4994 -1.0 -3.5 conserved protein of unknown function compare
PP_5331 -1.0 -3.9 Long-chain acyl-CoA thioester hydrolase compare
PP_2903 -1.0 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4342 -1.0 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_2880 -0.9 -2.3 Transcriptional regulator, TetR family compare
PP_1930 -0.9 -3.1 arsenic resistance transcriptional regulator compare
PP_3946 -0.9 -1.4 HTH-type transcriptional repressor NicR compare
PP_4910 -0.9 -1.8 conserved protein of unknown function compare
PP_4895 -0.9 -2.0 tRNA dimethylallyltransferase compare
PP_5217 -0.9 -6.5 Polyphosphate kinase compare
PP_4724 -0.9 -3.5 Carbamoyl-phosphate synthase small chain compare
PP_4799 -0.9 -2.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4373 -0.9 -5.3 Transcriptional regulator FleQ compare
PP_0805 -0.9 -5.3 Outer membrane efflux protein compare
PP_1237 -0.8 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1468 -0.8 -1.9 Tyrosine recombinase XerD compare
PP_1664 -0.8 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_5706 -0.8 -1.4 Sec translocation complex - SecG subunit compare
PP_2459 -0.8 -2.5 ribose pyranase compare
PP_1319 -0.8 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2000 -0.8 -1.9 amidophosphoribosyl transferase compare
PP_4707 -0.8 -1.9 OsmY-related protein compare
PP_4836 -0.8 -1.9 conserved exported protein of unknown function compare
PP_2186 -0.8 -2.5 putative Formate dehydrogenase, delta subunit compare
PP_0804 -0.8 -4.6 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0003 -0.8 -2.5 16S RNA methyltransferase compare
PP_3398 -0.8 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4129 -0.8 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5652 -0.8 -1.9 conserved protein of unknown function, phage origin compare
PP_1410 -0.8 -1.1 conserved protein of unknown function compare
PP_4136 -0.8 -0.9 Transcriptional regulator, LuxR family compare
PP_5014 -0.8 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_5090 -0.8 -1.5 putative cell division protein compare
PP_1489 -0.8 -2.4 CheW domain protein compare
PP_3643 -0.8 -2.7 putative Oxidoreductase compare
PP_2737 -0.8 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2700 -0.8 -2.4 AhpC/TSA family protein compare
PP_0806 -0.7 -6.9 putative Surface adhesion protein compare
PP_4375 -0.7 -4.0 flagellar chaperone, inhibits premature FliC assembly compare
PP_4738 -0.7 -2.3 conserved exported protein of unknown function compare
PP_1979 -0.7 -1.8 putative Hydrolase compare
PP_4642 -0.7 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_4722 -0.7 -2.3 Transcription elongation factor GreA compare
PP_4700 -0.7 -0.5 pantothenate synthetase compare
PP_4629 -0.7 -2.7 Sensory box protein compare
PP_0574 -0.7 -5.6 DNA-binding response regulator, LuxR family compare
PP_5230 -0.7 -2.3 Tyrosine recombinase XerC compare
PP_1293 -0.7 -0.8 molybdopterin synthase small subunit compare
PP_1623 -0.7 -4.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_5453 -0.7 -1.6 conserved protein of unknown function compare
PP_5423 -0.7 -1.3 conserved membrane protein of unknown function compare
PP_2110 -0.7 -1.7 putative ribosomal large subunit pseudouridine synthase compare
PP_4320 -0.7 -2.5 cytochrome c-type biogenesis protein compare
PP_t13 -0.7 -1.0 tRNA-Lys compare
PP_0266 -0.7 -3.8 Agmatine deiminase compare
PP_2145 -0.7 -3.2 beta-N-acetylglucosaminidase compare
PP_5445 -0.7 -1.5 conserved protein of unknown function compare
PP_1217 -0.7 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5604 -0.7 -1.4 putative subtilisin-like serine protease compare
PP_2379 -0.7 -2.9 putative cytochrome oxidase biogenesis protein compare
PP_4669 -0.7 -2.2 OmpA family protein compare
PP_0775 -0.7 -1.1 conserved protein of unknown function compare
PP_2889 -0.7 -2.9 putative Transmembrane regulator PrtR compare
PP_t12 -0.7 -1.1 tRNA-Thr compare
PP_3075 -0.7 -2.1 putative transcriptional regulator compare
PP_1352 -0.7 -1.7 UPF0234 protein PP_1352 compare
PP_1678 -0.7 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4546 -0.7 -2.2 ATP-dependent helicase HrpA compare
PP_5648 -0.7 -2.0 conserved exported protein of unknown function compare
PP_0440 -0.7 -1.8 Elongation factor Tu-A compare
PP_5232 -0.7 -1.5 conserved protein of unknown function compare
PP_2820 -0.6 -1.9 HTH-type transcriptional regulator nfxB compare
PP_0435 -0.6 -4.3 Peptidase, M23/M37 family compare
PP_1110 -0.6 -1.7 serine acetyltransferase compare
PP_3105 -0.6 -1.8 conserved membrane protein of unknown function compare
PP_3508 -0.6 -2.1 Protein CobW compare
PP_1111 -0.6 -3.8 putative Synthetase compare
PP_2054 -0.6 -2.3 putative DNA-binding transcriptional regulator compare
PP_5508 -0.6 -0.8 conserved protein of unknown function compare
PP_0368 -0.6 -4.0 putative Acyl-CoA dehydrogenase compare
PP_2387 -0.6 -1.1 conserved protein of unknown function compare
PP_1898 -0.6 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_2999 -0.6 -0.9 Glyoxalase family protein compare
PP_3765 -0.6 -2.2 H-NS family protein MvaT compare
PP_4343 -0.6 -2.5 Flagellar biosynthesis protein FlhF compare
PP_3866 -0.6 -2.0 conserved protein of unknown function compare
PP_4942 -0.6 -1.1 conserved protein of unknown function compare
PP_2773 -0.6 -0.7 conserved protein of unknown function compare
PP_3198 -0.6 -1.3 Ferredoxin, 2Fe-2S compare
PP_4133 -0.6 -1.3 Transcriptional regulator-related protein compare
PP_5146 -0.6 -3.4 RNA pyrophosphohydrolase compare
PP_4259 -0.6 -3.8 Iron-sulfur cluster-binding protein compare
PP_5350 -0.6 -1.4 Transcriptional regulator, RpiR family compare
PP_5597 -0.6 -1.3 conserved protein of unknown function compare
PP_0672 -0.6 -4.4 Sensory box protein compare
PP_4251 -0.6 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_5631 -0.6 -3.2 protein of unknown function compare
PP_0803 -0.6 -3.7 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2796 -0.6 -2.6 conserved protein of unknown function compare
PP_0117 -0.6 -2.9 Zn(2+) ABC transporter - permease subunit compare
PP_5295 -0.6 -1.1 conserved protein of unknown function compare
PP_5327 -0.6 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_3891 -0.6 -1.3 conserved protein of unknown function compare
PP_1779 -0.6 -2.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4870 -0.6 -1.6 Azurin compare
PP_2299 -0.6 -1.7 Trigger factor compare
PP_5702 -0.6 -1.7 conserved protein of unknown function compare
PP_4171 -0.6 -5.3 conserved exported protein of unknown function compare
PP_5329 -0.6 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4260 -0.6 -2.4 conserved protein of unknown function compare
PP_t49 -0.6 -2.3 tRNA-Met compare
PP_4964 -0.6 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5533 -0.6 -0.9 conserved protein of unknown function compare
PP_4057 -0.6 -2.6 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_2631 -0.6 -0.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1190 -0.6 -1.7 conserved protein of unknown function compare
PP_4483 -0.5 -3.3 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_0319 -0.5 -1.3 conserved protein of unknown function compare
PP_5279 -0.5 -1.4 conserved protein of unknown function compare
PP_2511 -0.5 -1.7 conserved protein of unknown function compare
PP_4004 -0.5 -1.5 DNA translocase FtsK compare
PP_2083 -0.5 -2.3 putative Lipase compare
PP_4814 -0.5 -1.8 ATP-dependent protease La domain protein compare
PP_0504 -0.5 -2.5 Outer membrane protein OprG compare
PP_4253 -0.5 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4944 -0.5 -1.4 Carbamoyltransferase compare
PP_2928 -0.5 -3.1 Saccharopine dehydrogenase compare
PP_5104 -0.5 -2.9 thiazole synthase compare
PP_0948 -0.5 -1.1 Phosphocarrier protein HPr compare
PP_1318 -0.5 -2.9 Cytochrome b compare
PP_0125 -0.5 -1.8 putative cytochrome c-type protein compare
PP_5256 -0.5 -1.9 Cyclic nucleotide-binding protein compare
PP_2958 -0.5 -1.5 Glutaredoxin compare
PP_4721 -0.5 -2.5 conserved membrane protein of unknown function compare
PP_2402 -0.5 -1.1 putative Sensor histidine kinase compare
PP_5491 -0.5 -1.5 conserved protein of unknown function with SEC-C motif domain compare
PP_4261 -0.5 -2.4 cation-transporting P-type ATPase compare
PP_5393 -0.5 -0.9 putative metal-binding chaperone compare
PP_4829 -0.5 -1.5 putative precorrin-3B synthase compare
PP_3802 -0.5 -2.0 putative Cation ABC transporter, ATP-binding protein compare
PP_0103 -0.5 -2.8 cytochrome c oxidase subunit 2 compare
PP_2336 -0.5 -1.7 aconitate hydratase 1 compare
PP_4122 -0.5 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5227 -0.5 -2.6 diaminopimelate decarboxylase compare
PP_4250 -0.5 -3.4 cytochrome c oxidase subunit I, cbb3-type compare
PP_5352 -0.5 -3.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1867 -0.5 -2.8 conserved protein of unknown function compare
PP_4902 -0.5 -1.2 Oligoribonuclease compare
PP_0167 -0.5 -4.2 Toxin secretion ATP-binding protein compare
PP_1829 -0.5 -1.3 Hydrolase, alpha/beta fold family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Cholinium alpha ketoglutarate across organisms