Experiment set4IT007 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus HD100_1

200 most detrimental genes:

  gene name fitness t score description  
ECD_01487 +3.6 15.6 phage N15 gp48-like protein compare
ECD_01810 +3.4 2.3 DUF2511 family protein compare
ECD_01681 +3.2 7.3 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01556 +3.2 2.5 putative selenate reductase, periplasmic compare
ECD_01281 +3.1 11.2 regulatory protein for phage-shock-protein operon compare
ECD_01489 +3.1 10.2 transcriptional repressor of multiple antibiotic resistance compare
ECD_02033 +3.1 6.4 hypothetical protein compare
ECD_01719 +3.1 2.7 TVP38/TMEM64 family inner membrane protein compare
ECD_01619 +2.9 11.3 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_01310 +2.9 3.4 stress-induced protein compare
ECD_01250 +2.8 4.0 DNA topoisomerase I, omega subunit compare
ECD_01059 +2.8 4.7 lipoprotein, DUF1439 family compare
ECD_01557 +2.8 3.7 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_01084 +2.8 13.5 DUF177 family protein compare
ECD_01897 +2.8 2.5 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_02024 +2.7 7.4 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_01081 +2.7 7.9 uncharacterized protein compare
ECD_t00008 +2.7 10.0 tRNA-Gln compare
ECD_01737 +2.5 1.8 nicotinamidase/pyrazinamidase compare
ECD_02021 +2.5 14.0 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_02179 +2.5 18.0 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_01459 +2.5 2.3 putative oxidoreductase compare
ECD_t00039 +2.5 6.1 tRNA-Ala compare
ECD_01160 +2.4 9.1 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_01276 +2.4 11.6 repressor for the divergent puu operons, putrescine inducible compare
ECD_01713 +2.4 3.8 succinylglutamate desuccinylase compare
ECD_01702 +2.4 4.1 chito-oligosaccharide deacetylase compare
ECD_01625 +2.3 3.4 murein DD-endopeptidase, space-maker hydrolase compare
ECD_01629 +2.2 5.2 transcriptional repressor, hypoxanthine-binding compare
ECD_01611 +2.2 12.7 outer membrane lipoprotein compare
ECD_01245 +2.1 8.4 23S rRNA pseudouridine(2605) synthase compare
ECD_01703 +2.1 3.4 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_01082 +2.1 11.9 23S rRNA pseudouridine(955,2504,2580) synthase compare
ECD_01435 +2.1 3.4 putative DNA-binding transcriptional regulator compare
ECD_02105 +2.1 17.0 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_02178 +2.1 13.4 putative LPS core heptose(II)-phosphate phosphatase compare
ECD_t00038 +2.0 6.3 tRNA-Arg compare
ECD_03556 +2.0 2.9 ilvB operon leader peptide compare
ECD_01562 +2.0 1.7 putative dethiobiotin synthetase compare
ECD_01770 +2.0 2.8 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_04342 +2.0 15.2 hypothetical protein compare
ECD_00311 +2.0 6.2 regulator protein that represses frmRAB operon compare
ECD_00781 +2.0 8.5 outer membrane protein X compare
ECD_01124 +1.9 3.3 spermidine/putrescine ABC transporter ATPase compare
ECD_01019 +1.9 4.5 putative membrane protein compare
ECD_01875 +1.9 10.7 tyrosine transporter compare
ECD_02181 +1.9 15.3 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_00574 +1.9 10.1 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01121 +1.9 3.3 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_02097 +1.9 7.4 fructose-1-phosphate kinase compare
ECD_02523 +1.9 13.3 tributyltin-inducible repressor of ygaVP compare
ECD_01063 +1.9 2.0 UPF0502 family protein compare
ECD_02278 +1.9 1.8 multidrug resistance efflux pump membrane fusion protein compare
ECD_00901 +1.8 1.8 putative isochorismatase family hydrolase compare
ECD_00392 +1.8 9.2 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01798 +1.8 7.4 KDG regulon transcriptional repressor compare
ECD_00970 +1.8 6.1 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01802 +1.8 8.8 RNA chaperone, putative ProP translation regulator compare
ECD_01579 +1.8 5.6 inhibitor of replication at Ter, DNA-binding protein compare
ECD_02182 +1.8 8.2 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_02018 +1.8 5.2 galactitol-specific enzyme IIC component of PTS compare
ECD_00509 +1.8 5.0 DLP12 prophage; putative lipoprotein compare
ECD_01977 +1.8 1.6 ser/thr phosphatase-related protein compare
ECD_01727 +1.8 2.7 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_01826 +1.8 4.4 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_01836 +1.7 6.3 dihydroneopterin triphosphate pyrophosphatase compare
ECD_01799 +1.7 1.3 putative transporter compare
ECD_00399 +1.7 2.2 putative DNA-binding transcriptional regulator compare
ECD_02180 +1.7 11.4 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_01122 +1.7 2.8 spermidine/putrescine ABC transporter permease compare
ECD_01240 +1.7 2.8 PHP domain protein compare
ECD_01844 +1.7 1.0 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01049 +1.6 2.5 putative drug efflux system protein compare
ECD_01930 +1.6 9.4 UDP-glucose 6-dehydrogenase compare
ECD_00077 +1.6 8.9 leu operon leader peptide compare
ECD_01374 +1.6 2.1 cytochrome b561 compare
ECD_02090 +1.6 2.3 nucleoside permease compare
ECD_00381 +1.6 8.5 cytochrome o ubiquinol oxidase subunit III compare
ECD_01381 +1.5 4.5 OPG biosynthetic periplasmic protein compare
ECD_01302 +1.5 2.3 L-Ala-D/L-Glu epimerase compare
ECD_00961 +1.5 9.4 outer membrane protein A (3a compare
ECD_00032 +1.5 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_01353 +1.5 1.7 putative membrane-anchored protein, function unknown compare
ECD_02423 +1.5 8.0 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_t00011 +1.5 3.5 tRNA-Gln compare
ECD_01020 +1.5 4.8 inactive ferrous ion transporter EfeUOB compare
ECD_01912 +1.5 1.2 DNA gyrase inhibitor compare
ECD_00001 +1.5 2.4 thr operon leader peptide compare
ECD_00947 +1.5 2.1 putative fimbrial-like adhesin protein compare
ECD_01784 +1.5 5.3 L-serine dehydratase 1 compare
ECD_02686 +1.5 13.1 diaminopimelate decarboxylase, PLP-binding compare
ECD_01289 +1.4 1.8 putative sugar ABC transporter permease compare
ECD_02276 +1.4 8.2 D-serine dehydratase compare
ECD_01624 +1.4 2.6 glutaredoxin-4 compare
ECD_00882 +1.4 6.0 DUF535 family protein compare
ECD_01026 +1.4 1.3 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_01825 +1.4 3.9 pyruvate kinase II compare
ECD_01492 +1.4 1.2 cysteine and O-acetyl-L-serine efflux system compare
ECD_02098 +1.4 2.9 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_01803 +1.4 3.5 free methionine-(R)-sulfoxide reductase compare
ECD_01739 +1.4 3.1 putative DNA-binding transcriptional regulator compare
ECD_00382 +1.4 11.2 cytochrome o ubiquinol oxidase subunit I compare
ECD_01403 +1.4 2.3 DUF2526 family protein compare
ECD_01097 +1.4 5.2 fused glucose-specific PTS enzymes: IIB component/IIC component compare
ECD_01168 +1.4 1.4 lytic murein endotransglycosylase E compare
ECD_00112 +1.4 9.5 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_01854 +1.4 2.1 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_t00054 +1.4 7.3 tRNA-Gly compare
ECD_01824 +1.4 5.2 putative DNA-binding transcriptional regulator compare
ECD_04293 +1.4 3.9 inhibitor of glucose uptake compare
ECD_01021 +1.4 4.4 deferrrochelatase, periplasmic compare
ECD_01069 +1.4 4.0 flagellar component of cell-proximal portion of basal-body rod compare
ECD_01960 +1.4 2.7 putative acyl transferase compare
ECD_02289 +1.4 7.2 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_00379 +1.3 8.8 protoheme IX farnesyltransferase compare
ECD_01390 +1.3 1.4 IS609 transposase B compare
ECD_01789 +1.3 1.3 mannose-specific enzyme IID component of PTS compare
ECD_01060 +1.3 1.1 glutaredoxin 2 (Grx2) compare
ECD_01396 +1.3 1.4 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_00689 +1.3 3.6 transcriptional repressor for the mannosyl-D-glycerate catabolic operon compare
ECD_02085 +1.3 9.5 lysine transporter compare
ECD_01751 +1.3 3.3 scaffolding protein for murein synthesizing machinery compare
ECD_01164 +1.3 2.4 D-amino acid dehydrogenase compare
ECD_t00085 +1.3 7.3 tRNA-Leu compare
ECD_01263 +1.3 3.1 ribonuclease II compare
ECD_01795 +1.3 2.7 putative inner membrane protein compare
ECD_01929 +1.3 7.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
ECD_01391 +1.3 1.0 BenE family inner membrane putative transporter compare
ECD_00606 +1.3 5.3 ribosomal silencing factor compare
ECD_02244 +1.3 6.6 putative semialdehyde dehydrogenase compare
ECD_00383 +1.3 8.7 cytochrome o ubiquinol oxidase subunit II compare
ECD_01080 +1.3 3.6 endoribonuclease; RNA-binding protein compare
ECD_02390 +1.2 7.4 uracil phosphoribosyltransferase compare
ECD_00417 +1.2 3.5 DUF2496 family protein compare
ECD_01068 +1.2 3.0 assembly protein for flagellar basal-body periplasmic P ring compare
ECD_00913 +1.2 2.6 putative peptidase-related chaperone compare
ECD_02416 +1.2 3.2 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_00082 +1.2 2.4 RsmH methytransferase inhibitor compare
ECD_03118 +1.2 9.3 tRNA-dihydrouridine synthase B compare
ECD_00995 +1.2 1.8 putative 4Fe-4S membrane protein compare
ECD_02893 +1.2 7.0 antitoxin for MqsR toxin; transcriptional repressor compare
ECD_01957 +1.2 1.1 GDP-mannose mannosyl hydrolase compare
ECD_01163 +1.2 1.9 SpoVR family stationary phase protein compare
ECD_01203 +1.2 1.6 nitrate reductase 1, beta (Fe-S) subunit compare
ECD_00963 +1.2 3.5 CRP-S-dependent promoter expression factor compare
ECD_01352 +1.2 1.5 fermentative D-lactate dehydrogenase, NAD-dependent compare
ECD_01793 +1.2 2.4 stress protein, member of the CspA-family compare
ECD_02539 +1.1 9.3 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00935 +1.1 4.9 nicotinate phosphoribosyltransferase compare
ECD_00061 +1.1 10.4 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_02776 +1.1 7.5 16S rRNA m(3)U1498 methyltransferase, SAM-dependent compare
ECD_01630 +1.1 1.5 LysR family putative transcriptional regulator compare
ECD_00375 +1.1 7.9 putative transporter compare
ECD_02484 +1.1 7.5 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_04030 +1.1 1.6 phosphatidylserine decarboxylase compare
ECD_01724 +1.1 1.1 putative ABC transporter permease compare
ECD_01865 +1.1 1.4 trehalose-6-phosphate synthase compare
ECD_01879 +1.1 0.8 response regulator in two-component regulatory system with BarA compare
ECD_00380 +1.1 1.3 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02882 +1.1 6.6 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter compare
ECD_00461 +1.1 1.9 putative allantoin transporter compare
ECD_00093 +1.1 6.8 D-alanine:D-alanine ligase compare
ECD_01835 +1.1 0.9 UPF0082 family protein compare
ECD_00984 +1.0 1.9 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_00130 +1.0 2.7 aspartate 1-decarboxylase compare
ECD_00883 +1.0 3.1 macrolide transporter membrane fusion protein (MFP) component compare
ECD_01779 +1.0 0.9 putative reactive intermediate deaminase compare
ECD_01671 +1.0 2.0 phosphoenolpyruvate synthase compare
ECD_02129 +1.0 2.7 quinol dehydrogenase, electron source for NapAB compare
ECD_t00059 +1.0 2.0 tRNA-Thr compare
ECD_01161 +1.0 2.7 sodium:proton antiporter compare
ECD_02304 +1.0 1.8 DUF1323 family putative DNA-binding protein compare
ECD_00418 +1.0 3.2 primosomal replication protein N'' compare
ECD_01868 +1.0 1.6 L-arabinose ABC transporter ATPase compare
ECD_01589 +1.0 1.1 transcriptional repressor of Mal regulon compare
ECD_02914 +1.0 5.3 BMFP family putative fusogenic protein compare
ECD_02840 +1.0 1.8 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_01241 +1.0 0.9 putative RNA binding protein compare
ECD_02628 +1.0 3.9 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_00443 +1.0 4.5 DnaK co-chaperone, thioredoxin-like protein compare
ECD_00858 +1.0 1.4 negative regulator of motility; multicopy suppressor of coaA(Ts) compare
ECD_00998 +1.0 1.8 response regulator in two-component regulatory system with TorS compare
ECD_02369 +1.0 3.8 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02096 +1.0 3.9 fused fructose-specific PTS enzymes: IIBcomponent/IIC components compare
ECD_01917 +1.0 3.8 putrescine importer, low affinity compare
ECD_02475 +1.0 5.9 putative methyltransferase compare
ECD_02769 +1.0 3.6 uncharacterized protein compare
ECD_00204 +1.0 8.0 putative membrane-bound lytic murein transglycosylase D compare
ECD_04388 +0.9 2.7 putative membrane-bound BasS regulator compare
ECD_00702 +0.9 4.2 periplasmic TolA-binding protein compare
ECD_00612 +0.9 1.6 DUF1451 family protein compare
ECD_02505 +0.9 7.3 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_02482 +0.9 6.3 protein disaggregation chaperone compare
ECD_02086 +0.9 3.2 putative DNA-binding transcriptional regulator compare
ECD_00671 +0.9 2.8 putative allophanate hydrolase, subunit 1 compare
ECD_00849 +0.9 2.0 putative DNA-invertase compare
ECD_04246 +0.9 5.6 16S rRNA m(2)G1207 methyltransferase, SAM-dependent compare
ECD_02591 +0.9 7.5 RNA polymerase, sigma S (sigma 38) factor compare
ECD_02677 +0.9 7.9 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_00807 +0.9 0.7 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare


Specific Phenotypes

For 1 genes in this experiment