Experiment set4IT007 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu0017 -3.9 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1446 -2.3 -3.7 two component response regulator compare
Atu1030 -2.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2289 -2.2 -12.0 anthranilate synthase component I and II compare
Atu1688 -2.1 -4.8 indole-3-glycerol-phosphate synthase compare
Atu1687 -2.1 -4.7 anthranilate phosphoribosyltransferase compare
Atu0346 -2.0 -2.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1685 -2.0 -1.4 hypothetical protein compare
Atu1307 -2.0 -5.8 dihydroorotase compare
Atu0399 -1.9 -7.2 dihydroorotase compare
Atu0184 -1.9 -4.0 glucokinase compare
Atu1844 -1.9 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu1308 -1.9 -6.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0031 -1.6 -2.1 PTS system, IIA component compare
Atu0400 -1.5 -3.0 orotate phosphoribosyltransferase compare
Atu2728 -1.5 -4.6 beta (1-->2) glucan export ATP-binding protein compare
Atu0486 -1.5 -4.1 dihydroorotate dehydrogenase compare
Atu2684 -1.5 -1.1 hypothetical protein compare
Atu0103 -1.5 -7.8 penicillin-binding protein compare
Atu3183 -1.4 -1.1 hypothetical protein compare
Atu2710 -1.4 -7.2 hypothetical protein compare
Atu2067 -1.4 -1.5 hypothetical protein compare
Atu0298 -1.4 -5.5 orotidine 5 compare
Atu0647 -1.3 -5.7 phosphoribosylamine--glycine ligase compare
Atu1891 -1.3 -4.3 cobalamin biosynthesis protein compare
Atu0421 -1.3 -1.7 ABC transporter, membrane spanning protein compare
Atu1686 -1.3 -7.6 peptidyl-prolyl cis-trans isomerse D compare
Atu1141 -1.2 -3.1 Phosphoribosylglycinamide synthetase compare
Atu0190 -1.2 -5.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3465 -1.2 -3.1 metallo-beta-lactamase superfamily protein compare
Atu0188 -1.1 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0434 -1.1 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1503 -1.1 -1.1 hypothetical protein compare
Atu4144 -1.1 -1.3 hypothetical protein compare
Atu1774 -1.1 -5.7 ABC transporter, substrate binding protein (peptide) compare
Atu0535 -1.1 -3.7 hypothetical protein compare
Atu0972 -1.0 -3.9 lipA protein compare
Atu3469 -1.0 -2.1 phosphoglyceromutase compare
Atu1075 -1.0 -4.4 amidophosphoribosyltransferase compare
Atu0971 -1.0 -2.5 two component sensor kinase compare
Atu0039 -1.0 -1.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1760 -1.0 -1.4 hypothetical protein compare
Atu1850 -1.0 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4075 -1.0 -4.8 glycogen synthase compare
Atu4418 -1.0 -3.8 glutaryl-CoA dehydrogenase compare
Atu3486 -1.0 -1.9 DeoR family transcriptional regulator compare
Atu1140 -0.9 -2.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3001 -0.9 -2.7 hypothetical protein compare
Atu0025 -0.9 -2.0 hypothetical protein compare
Atu3634 -0.9 -4.0 penicillin-binding protein dacf precursor compare
Atu3032 -0.9 -1.5 hypothetical protein compare
Atu0471 -0.9 -2.4 hypothetical protein compare
Atu0470 -0.9 -2.2 hypothetical protein compare
Atu8055 -0.9 -1.4 hypothetical protein compare
Atu4890 -0.9 -1.4 IS426 transposase compare
Atu2249 -0.9 -0.9 hypothetical protein compare
Atu1845 -0.9 -2.3 phosphoribosylformylglycinamidine synthase I compare
Atu1028 -0.9 -1.7 hypothetical protein compare
Atu2113 -0.9 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu1588 -0.9 -5.4 homoserine dehydrogenase compare
Atu5486 -0.9 -3.2 hypothetical protein compare
Atu2802 -0.9 -3.5 precorrin-8X methylmutase compare
Atu3018 -0.8 -3.5 hypothetical protein compare
Atu0361 -0.8 -2.4 transcriptional regulator compare
Atu2040 -0.8 -2.8 phosphoserine phosphatase compare
Atu3754 -0.8 -3.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0142 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu2801 -0.8 -2.5 precorrin-2 C20 methyltransferase compare
Atu2464 -0.8 -1.6 formyltetrahydrofolate deformylase compare
Atu3739 -0.8 -1.6 phosphoglycerate kinase compare
Atu1302 -0.8 -2.0 hypothetical protein compare
Atu0422 -0.8 -1.4 ABC transporter, membrane spanning protein compare
Atu3750 -0.8 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu3483 -0.8 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu5034 -0.8 -0.9 hypothetical protein compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu0598 -0.8 -3.8 phosphogluconate dehydratase compare
Atu1185 -0.7 -2.5 hypothetical protein compare
Atu4072 -0.7 -1.3 nodulation protein N compare
Atu0189 -0.7 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2787 -0.7 -0.8 hypothetical protein compare
Atu3593 -0.7 -3.4 hypothetical protein compare
Atu4873 -0.7 -3.7 TetR family transcriptional regulator compare
Atu6114 -0.7 -1.5 hypothetical protein compare
Atu1466 -0.7 -1.3 hypothetical protein compare
Atu0953 -0.7 -0.7 hypothetical protein compare
Atu2804 -0.7 -4.4 cobaltochelatase subunit compare
Atu2805 -0.7 -2.8 cobalamin synthesis protein compare
Atu2808 -0.7 -4.1 cobyric acid synthase compare
Atu4677 -0.7 -0.7 hypothetical protein compare
Atu1110 -0.7 -1.9 cytosol aminopeptidase compare
Atu2807 -0.7 -3.2 cob(I)alamin adenosyltransferase compare
Atu2640 -0.7 -3.1 hypothetical protein compare
Atu1620 -0.7 -5.0 triosephosphate isomerase compare
Atu1739 -0.7 -2.3 permease compare
Atu1052 -0.7 -2.2 hypothetical protein compare
Atu1810 -0.7 -0.8 hypothetical protein compare
Atu4884 -0.7 -2.7 hypothetical protein compare
Atu3071 -0.7 -3.3 hypothetical protein compare
Atu0895 -0.7 -2.3 ABC transporter, substrate binding protein compare
Atu1542 -0.7 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1629 -0.7 -1.1 transcriptional regulator, ArsR family compare
Atu2114 -0.7 -2.7 molecular chaperone, DnaJ family compare
Atu3727 -0.7 -2.3 hypothetical protein compare
Atu3429 -0.7 -1.1 hypothetical protein compare
Atu5443 -0.6 -2.9 TetR family transcriptional regulator compare
Atu5125 -0.6 -3.0 GntR family transcriptional regulator compare
Atu2809 -0.6 -4.0 cobalamin biosynthesis protein compare
Atu8168 -0.6 -2.0 hypothetical protein compare
Atu0236 -0.6 -1.6 hypothetical protein compare
Atu0460 -0.6 -2.5 hypothetical protein compare
Atu0876 -0.6 -0.8 superoxide dismutase compare
Atu2650 -0.6 -3.2 glycerol-3-phosphate dehydrogenase compare
Atu8025 -0.6 -0.7 hypothetical protein compare
Atu0153 -0.6 -1.7 transcriptional regulator, Fur family compare
Atu2125 -0.6 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu4050 -0.6 -2.3 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2796 -0.6 -2.5 precorrin-4 C11-methyltransferase compare
Atu8144 -0.6 -1.9 hypothetical protein compare
Atu5114 -0.6 -1.5 hypothetical protein compare
Atu1355 -0.6 -3.4 hypothetical protein compare
Atu1463 -0.6 -2.9 glycine cleavage system component H compare
Atu2036 -0.6 -4.2 acetolactate synthase III, large subunit compare
Atu8183 -0.6 -2.7 hypothetical protein compare
Atu4825 -0.6 -3.1 dehydrogenase compare
Atu1364 -0.5 -2.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4317 -0.5 -1.5 TetR family transcriptional regulator compare
Atu0119 -0.5 -0.8 hypothetical protein compare
Atu3083 -0.5 -2.9 hypothetical protein compare
Atu0181 -0.5 -2.4 hypothetical protein compare
Atu4753 -0.5 -1.8 amino acid ABC transporter permease compare
Atu0726 -0.5 -4.0 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1380 -0.5 -2.2 zinc metallopeptidase compare
Atu0941 -0.5 -0.5 hypothetical protein compare
Atu0469 -0.5 -3.0 hypothetical protein compare
Atu0467 -0.5 -2.5 hypothetical protein compare
Atu1874 -0.5 -0.9 RecA protein compare
Atu2798 -0.5 -1.5 precorrin-6y methyltransferase compare
Atu0185 -0.5 -2.8 methylglyoxal synthase compare
Atu0419 -0.5 -1.6 two component sensor kinase compare
Atu2237 -0.5 -2.1 cytochrome c1 compare
Atu0606 -0.5 -1.7 hypothetical protein compare
Atu4773 -0.5 -0.9 two component response regulator compare
Atu4108 -0.5 -2.9 ribonuclease D compare
Atu8123 -0.5 -2.8 hypothetical protein compare
Atu0437 -0.5 -2.1 hypothetical protein compare
Atu2692 -0.5 -2.1 intracellular septation protein compare
Atu2437 -0.5 -2.0 hypothetical protein compare
Atu3019 -0.5 -2.5 hypothetical protein compare
Atu5426 -0.5 -2.7 hypothetical protein compare
Atu5148 -0.5 -1.9 hypothetical protein compare
Atu3697 -0.5 -1.5 ATP-dependent protease LA 2 compare
Atu3759 -0.5 -0.9 hypothetical protein compare
Atu0038 -0.5 -1.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4841 -0.5 -3.2 DeoR family transcriptional regulator compare
Atu0765 -0.5 -2.6 TldD compare
Atu5440 -0.5 -1.9 hypothetical protein compare
Atu0457 -0.5 -3.0 hypothetical protein compare
Atu1127 -0.5 -1.3 molybdopterin converting factor small subunit compare
Atu2278 -0.5 -3.2 transcriptional regulator, ArsR family compare
Atu4567 -0.5 -2.2 ROK family transcriptional regulator compare
Atu2368 -0.5 -0.8 hypothetical protein compare
Atu8195 -0.5 -0.6 hypothetical protein compare
Atu5010 -0.5 -1.0 hypothetical protein compare
Atu3050 -0.5 -3.3 AgaE protein compare
Atu1793 -0.5 -3.0 phosphatidylcholine synthase compare
Atu0973 -0.5 -3.1 cycH protein compare
Atu4866 -0.5 -3.1 hypothetical protein compare
Atu1484 -0.5 -1.7 transcriptional regulator compare
Atu8023 -0.5 -1.1 hypothetical protein compare
Atu4869 -0.5 -1.6 hypothetical protein compare
Atu3886 -0.5 -2.3 lysophospholipase compare
Atu0727 -0.5 -3.2 ferredoxin I compare
Atu1518 -0.5 -1.6 transcriptional regulator, Fur family compare
Atu8184 -0.5 -2.6 hypothetical protein compare
Atu3098 -0.5 -3.2 sn-glycerol-3-phosphate ABC transporter membrane protein compare
Atu2436 -0.5 -1.6 hypothetical protein compare
Atu0453 -0.5 -3.0 hypothetical protein compare
Atu4864 -0.5 -2.4 MarR family transcriptional regulator compare
Atu6153 -0.5 -1.3 conserved hypothetical protein compare
Atu1038 -0.5 -0.7 two component response regulator compare
Atu3026 -0.5 -2.2 short chain dehydrogenase compare
Atu2812 -0.5 -2.6 hypothetical protein compare
Atu4893 -0.5 -2.0 hypothetical protein compare
Atu8127 -0.5 -3.8 hypothetical protein compare
Atu2304 -0.5 -2.6 bacteroid development protein compare
Atu8046 -0.5 -1.5 hypothetical protein compare
Atu2793 -0.5 -1.8 cobyrinic acid a,c-diamide synthase compare
Atu4385 -0.5 -2.1 hypothetical protein compare
Atu2325 -0.5 -1.2 hypothetical protein compare
Atu1699 -0.5 -1.0 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu4882 -0.5 -0.9 hypothetical protein compare
Atu4711 -0.4 -2.0 two component sensor kinase compare
Atu8099 -0.4 -0.6 hypothetical protein compare
Atu1495 -0.4 -1.3 hypothetical protein compare
Atu0468 -0.4 -2.6 hypothetical protein compare
Atu4041 -0.4 -2.0 ribosomal large subunit pseudouridine synthase A compare
Atu2504 -0.4 -2.1 transcriptional regulator, GntR family compare
Atu1694 -0.4 -0.8 hypothetical protein compare
Atu2058 -0.4 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments