Experiment set4IT006 for Pseudomonas putida KT2440

Compare to:

LB with pinene 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_0959 -4.8 -4.4 phospholipid ABC transporter compare
PP_1386 -4.0 -8.7 Probable efflux pump periplasmic linker TtgA compare
PP_1384 -3.9 -9.6 Probable efflux pump outer membrane protein TtgC compare
PP_2163 -3.1 -9.7 VacJ lipoprotein compare
PP_0962 -3.1 -3.8 toluene-tolerance protein compare
PP_0856 -3.0 -3.6 conserved lipoprotein of unknown function compare
PP_4937 -2.9 -5.1 toluene tolerance protein compare
PP_1385 -2.8 -11.8 Probable efflux pump membrane transporter TtgB compare
PP_0960 -2.7 -6.0 phospholipid ABC transporter binding protein compare
PP_0958 -2.6 -6.9 phospholipid ABC transporter ATP-binding subunit compare
PP_4902 -2.6 -4.6 Oligoribonuclease compare
PP_0961 -2.6 -7.1 toluene tolerance protein compare
PP_1099 -2.4 -3.8 Cold shock protein CapB compare
PP_0346 -2.2 -8.2 putative Heptose kinase WapQ compare
PP_0063 -2.1 -4.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1528 -1.9 -1.8 conserved protein of unknown function compare
PP_1734 -1.7 -2.3 Probable septum site-determining protein MinC compare
PP_4880 -1.7 -6.6 exoribonuclease R compare
PP_0435 -1.7 -9.5 Peptidase, M23/M37 family compare
PP_0691 -1.7 -3.4 Glutamate 5-kinase compare
PP_4342 -1.7 -3.8 flagellar synthesis regulator, putative ATPase compare
PP_1656 -1.6 -8.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_4693 -1.5 -5.9 RNA polymerase-binding transcription factor DksA compare
PP_3474 -1.5 -2.5 putative Curli fiber protein CsgE compare
PP_0593 -1.5 -1.5 putative ribosome-binding factor compare
PP_5309 -1.4 -5.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0119 -1.4 -4.1 putative zinc uptake regulation protein ZUR compare
PP_1214 -1.4 -2.7 putative transcriptional regulatory protein compare
PP_4804 -1.4 -3.0 RlpA-like lipoprotein compare
PP_5058 -1.4 -5.4 Carboxy-terminal-processing protease compare
PP_2160 -1.4 -4.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0339 -1.4 -4.0 Pyruvate dehydrogenase E1 component compare
PP_1655 -1.3 -5.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0345 -1.3 -3.8 putative Heptose kinase WapP compare
PP_5331 -1.3 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_2000 -1.3 -2.8 amidophosphoribosyl transferase compare
PP_3312 -1.3 -2.2 putative Heat shock protein compare
PP_2900 -1.2 -3.4 conserved protein of unknown function compare
PP_5090 -1.2 -2.0 putative cell division protein compare
PP_3102 -1.2 -4.0 conserved protein of unknown function compare
PP_1629 -1.2 -4.3 Protein RecA compare
PP_4471 -1.2 -4.0 Magnesium transporter compare
PP_4814 -1.2 -1.6 ATP-dependent protease La domain protein compare
PP_4697 -1.2 -2.8 poly(A) polymerase compare
PP_4799 -1.2 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5329 -1.1 -3.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0182 -1.1 -3.6 conserved protein of unknown function compare
PP_2322 -1.1 -5.1 Major outer membrane lipoprotein compare
PP_4910 -1.1 -1.9 conserved protein of unknown function compare
PP_0181 -1.1 -4.1 conserved protein of unknown function compare
PP_0855 -1.1 -2.7 conserved protein of unknown function compare
PP_3938 -1.1 -2.4 conserved protein of unknown function compare
PP_1366 -1.1 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_4710 -1.1 -6.4 tRNA pseudouridine 55 synthase compare
PP_3580 -1.0 -2.3 conserved protein of unknown function compare
PP_1216 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5525 -1.0 -3.6 conserved exported protein of unknown function compare
PP_1898 -1.0 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_5621 -1.0 -2.1 protein of unknown function compare
PP_0674 -1.0 -5.9 ADP/ATP ratio sensor and inhibitor of translation compare
PP_2883 -1.0 -1.8 conserved protein of unknown function compare
PP_1663 -1.0 -6.3 conserved exported protein of unknown function compare
PP_0630 -1.0 -1.3 DNA gyrase inhibitor YacG compare
PP_4859 -1.0 -2.9 Transcriptional regulator, TetR family compare
PP_1812 -1.0 -2.4 conserved protein of unknown function compare
PP_4726 -1.0 -1.7 Chaperone protein DnaJ compare
PP_1232 -1.0 -5.0 conserved exported protein of unknown function compare
PP_2820 -0.9 -2.6 HTH-type transcriptional regulator nfxB compare
PP_4419 -0.9 -2.8 transposase compare
PP_0725 -0.9 -4.2 conserved hypothetical TPR repeat protein compare
PP_1733 -0.9 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1808 -0.9 -2.6 glucose-6-phosphate isomerase compare
PP_t29 -0.9 -1.7 tRNA-Ala compare
PP_4632 -0.9 -3.5 dihydrofolate reductase / dihydromonapterin reductase compare
PP_5748 -0.9 -1.8 cytochrome c heme lyase subunit compare
PP_4109 -0.9 -2.2 conserved protein of unknown function compare
PP_2976 -0.9 -1.6 putative transposase compare
PP_2622 -0.9 -1.7 conserved protein of unknown function compare
PP_2402 -0.8 -1.9 putative Sensor histidine kinase compare
PP_0164 -0.8 -4.2 conserved protein of unknown function compare
PP_1186 -0.8 -2.0 two component system DNA-binding transcriptional dual regulator compare
PP_0948 -0.8 -1.5 Phosphocarrier protein HPr compare
PP_5232 -0.8 -1.0 conserved protein of unknown function compare
PP_4004 -0.8 -2.5 DNA translocase FtsK compare
PP_2475 -0.8 -2.8 Transcriptional regulator, TetR family compare
PP_3808 -0.8 -1.7 Antibiotic synthesis protein MbtH compare
PP_0127 -0.8 -4.0 Thiol:disulfide interchange protein compare
PP_1871 -0.8 -3.5 Protease HtpX compare
PP_1317 -0.8 -3.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1836 -0.8 -2.4 putative metal transporter, ZIP family compare
PP_2826 -0.8 -2.3 Transcriptional regulator MexT compare
PP_0775 -0.8 -1.5 conserved protein of unknown function compare
PP_4828 -0.8 -1.1 Precorrin-8X methylmutase compare
PP_1862 -0.8 -1.7 conserved membrane protein of unknown function compare
PP_5095 -0.8 -0.9 pyrroline-5-carboxylate reductase compare
PP_0757 -0.8 -2.8 conserved protein of unknown function compare
PP_4916 -0.8 -2.7 putative esterase compare
PP_3020 -0.8 -1.7 putative Serine/threonine protein phosphatase compare
PP_4271 -0.8 -1.0 conserved protein of unknown function compare
PP_3064 -0.8 -1.8 Phage tail protein compare
PP_4364 -0.8 -1.9 putative Anti-sigma F factor antagonist compare
PP_2416 -0.8 -1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_5487 -0.8 -2.5 conserved protein of unknown function compare
PP_4994 -0.8 -2.8 conserved protein of unknown function compare
PP_4136 -0.7 -1.5 Transcriptional regulator, LuxR family compare
PP_1325 -0.7 -4.0 putative lipoprotein compare
PP_0440 -0.7 -2.6 Elongation factor Tu-A compare
PP_5475 -0.7 -1.5 conserved protein of unknown function compare
PP_2152 -0.7 -2.2 glycerophosphoryl diester phosphodiesterase compare
PP_2878 -0.7 -1.3 conserved protein of unknown function compare
PP_5546 -0.7 -1.6 conserved protein of unknown function compare
PP_5183 -0.7 -3.2 glutamylpolyamine synthetase compare
PP_4262 -0.7 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5145 -0.7 -5.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3541 -0.7 -1.6 Transporter, MgtC family compare
PP_2223 -0.7 -4.3 conserved protein of unknown function compare
PP_1269 -0.7 -0.9 Universal stress protein family compare
PP_4263 -0.7 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2429 -0.7 -1.7 putative Membrane protein compare
PP_4738 -0.7 -1.6 conserved exported protein of unknown function compare
PP_5604 -0.7 -1.6 putative subtilisin-like serine protease compare
PP_4836 -0.7 -2.9 conserved exported protein of unknown function compare
PP_5000 -0.7 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4793 -0.7 -2.0 conserved protein of unknown function compare
PP_2274 -0.7 -2.5 conserved protein of unknown function compare
PP_1513 -0.7 -1.8 Ribosomal RNA small subunit methyltransferase J compare
PP_2511 -0.7 -1.7 conserved protein of unknown function compare
PP_2765 -0.7 -1.2 putative Sulfonate monooxygenase MsuD compare
PP_5324 -0.7 -1.0 Response regulator compare
PP_1683 -0.7 -1.3 Transcriptional regulator, MarR family compare
PP_0439 -0.7 -2.2 conserved protein of unknown function compare
PP_2376 -0.6 -5.8 Esterified fatty acid cis/trans isomerase compare
PP_2616 -0.6 -2.1 conserved protein of unknown function compare
PP_5448 -0.6 -2.1 conserved protein of unknown function compare
PP_2320 -0.6 -4.9 conserved exported protein of unknown function compare
PP_5106 -0.6 -1.9 conserved inner membrane protein compare
PP_3475 -0.6 -2.3 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_2337 -0.6 -1.1 aconitate isomerase compare
PP_2999 -0.6 -0.9 Glyoxalase family protein compare
PP_0868 -0.6 -3.0 ABC transporter ATP-binding subunit compare
PP_5139 -0.6 -2.3 cadmium translocating P-type ATPase compare
PP_2472 -0.6 -1.8 putative transcriptional regulator, MerR family compare
PP_5661 -0.6 -1.9 putative lipoprotein compare
PP_2323 -0.6 -3.5 conserved protein of unknown function compare
PP_1999 -0.6 -1.3 membrane protein required for colicin V production compare
PP_0251 -0.6 -2.5 conserved membrane protein of unknown function compare
PP_4253 -0.6 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_t10 -0.6 -1.4 tRNA-Pro compare
PP_4700 -0.6 -0.4 pantothenate synthetase compare
PP_4921 -0.6 -3.3 Transporter, NCS1 nucleoside transporter family compare
PP_5520 -0.6 -2.8 conserved protein of unknown function compare
PP_5140 -0.6 -2.0 Transcriptional regulator, MerR family compare
PP_4260 -0.6 -2.2 conserved protein of unknown function compare
PP_3307 -0.6 -1.1 conserved protein of unknown function compare
PP_1324 -0.6 -3.0 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_2631 -0.6 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2946 -0.6 -2.2 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_3935 -0.6 -2.3 conserved protein of unknown function compare
PP_4817 -0.6 -2.4 MaoC domain protein compare
PP_3144 -0.6 -3.3 L-serine dehydratase compare
PP_2313 -0.6 -1.3 conserved membrane protein of unknown function compare
PP_5022 -0.6 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_1994 -0.6 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_0069 -0.6 -2.2 putative Rossmann fold nucleotide-binding protein compare
PP_5017 -0.6 -1.0 Sec-independent protein translocase protein TatB compare
PP_4964 -0.6 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0833 -0.6 -1.1 queuine tRNA-ribosyltransferase compare
PP_1783 -0.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1318 -0.6 -3.0 Cytochrome b compare
PP_5217 -0.6 -4.6 Polyphosphate kinase compare
PP_2148 -0.6 -3.7 transcription-repair coupling factor compare
PP_2073 -0.6 -1.8 Acetyltransferase, GNAT family compare
PP_3121 -0.5 -1.2 transcriptional regulator, LysR family compare
PP_t64 -0.5 -2.3 tRNA-Gly compare
PP_0185 -0.5 -2.9 Positive alginate biosynthesis regulatory protein compare
PP_4607 -0.5 -2.9 putative Transmembrane sensor compare
PP_2769 -0.5 -3.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1319 -0.5 -2.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4669 -0.5 -1.3 OmpA family protein compare
PP_4251 -0.5 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4893 -0.5 -3.4 GTPase HflX compare
PP_1217 -0.5 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1374 -0.5 -2.6 conserved protein of unknown function compare
PP_0865 -0.5 -2.7 ECF subfamily RNA polymerase sigma-24 factor compare
PP_5038 -0.5 -2.0 conserved lipoprotein of unknown function compare
PP_5423 -0.5 -1.5 conserved membrane protein of unknown function compare
PP_2665 -0.5 -1.7 Glycerol metabolism activator compare
PP_4532 -0.5 -0.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2550 -0.5 -1.4 putative transcriptional regulatory protein compare
PP_5745 -0.5 -2.3 paraquat-inducible protein A compare
PP_t49 -0.5 -2.1 tRNA-Met compare
PP_4961 -0.5 -1.2 putative Lipoprotein compare
PP_5628 -0.5 -1.3 conserved protein of unknown function compare
PP_4985 -0.5 -2.2 16S rRNA m3U1498 methyltransferase compare
PP_0827 -0.5 -1.7 putative phosphonate transport system permease protein PtxC compare
PP_3244 -0.5 -1.4 Magnesium transporter, MgtC family compare
PP_1204 -0.5 -2.5 putative Lipoprotein compare
PP_1589 -0.5 -3.2 uridylyltransferase compare
PP_5068 -0.5 -3.3 conserved protein of unknown function, UPF0061 family compare
PP_0276 -0.5 -0.7 Transcriptional regulator, Cro/CI family compare


Specific Phenotypes

For 2 genes in this experiment

For stress pinene in Pseudomonas putida KT2440

For stress pinene across organisms