Experiment set4IT006 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus HD100_10

200 most important genes:

  gene name fitness t score description  
ECD_00124 -5.1 -3.5 hypoxanthine phosphoribosyltransferase compare
ECD_03897 -4.9 -4.8 glucosephosphate isomerase compare
ECD_03685 -4.5 -3.1 diaminopimelate epimerase compare
ECD_00015 -4.5 -6.0 chaperone Hsp40, DnaK co-chaperone compare
ECD_00366 -4.1 -4.0 phosphatidylglycerophosphatase A compare
ECD_02584 -4.0 -2.9 serine/threonine-specific protein phosphatase 2 compare
ECD_02393 -3.8 -4.5 polyphosphate kinase, component of RNA degradosome compare
ECD_02111 -3.8 -2.6 uncharacterized protein compare
ECD_04107 -3.5 -2.4 trehalose-6-P hydrolase compare
ECD_03752 -3.5 -17.9 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_01801 -3.4 -3.3 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_01604 -3.4 -2.3 dipeptide and tripeptide permease A compare
ECD_01221 -3.3 -1.8 oligopeptide ABC transporter ATPase compare
ECD_01409 -3.3 -1.8 ATP-binding protein, periplasmic, function unknown compare
ECD_00053 -3.1 -5.8 diadenosine tetraphosphatase compare
ECD_00393 -3.1 -3.0 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_00634 -3.1 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02820 -3.0 -1.4 hypothetical protein compare
ECD_01755 -2.9 -1.6 putative diguanylate cyclase compare
ECD_00941 -2.9 -2.0 NAD(P)H-dependent FMN reductase compare
ECD_03086 -2.9 -6.1 sialic acid-inducible nan operon repressor compare
ECD_01118 -2.8 -1.8 deacetylase of acs and cheY, chemotaxis regulator compare
ECD_03920 -2.8 -3.0 uncharacterized protein compare
ECD_01928 -2.7 -1.5 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_03818 -2.7 -3.7 essential cell division protein compare
ECD_03488 -2.7 -6.3 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03591 -2.7 -3.4 tryptophanase leader peptide compare
ECD_02238 -2.7 -1.7 colicin V production protein compare
ECD_03121 -2.7 -1.5 putative membrane protein compare
ECD_03349 -2.7 -10.5 glutathione oxidoreductase compare
ECD_00867 -2.7 -1.9 arginine ABC transporter permease compare
ECD_01223 -2.6 -1.9 cardiolipin synthase 1 compare
ECD_04041 -2.5 -5.1 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_00502 -2.5 -1.6 DLP12 prophage; putative antitermination protein compare
ECD_03257 -2.5 -4.4 response regulator in two-component regulatory system with EnvZ compare
ECD_01399 -2.5 -1.6 putative ABC transporter permease compare
ECD_02508 -2.5 -2.3 tmRNA-binding trans-translation protein compare
ECD_00898 -2.4 -4.0 dimethyl sulfoxide reductase, anaerobic, subunit A compare
ECD_01591 -2.4 -1.7 PLP-dependent beta-cystathionase and maltose regulon regulator compare
ECD_01478 -2.4 -1.3 altronate oxidoreductase, NAD-dependent compare
ECD_01195 -2.4 -0.8 cation transport regulator compare
ECD_03731 -2.4 -7.0 TatABCE protein translocation system subunit compare
ECD_01706 -2.4 -1.3 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_02889 -2.3 -7.0 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_03353 -2.3 -3.0 hypothetical protein compare
ECD_04194 -2.3 -2.7 uncharacterized protein compare
ECD_00974 -2.3 -3.5 Modulator of FtsH protease, inner membrane protein compare
ECD_01014 -2.3 -2.3 ureidoacrylate amidohydrolase compare
ECD_01479 -2.3 -1.3 putative membrane-bound diguanylate cyclase compare
ECD_02237 -2.3 -5.3 amidophosphoribosyltransferase compare
ECD_00322 -2.3 -1.3 putative transcriptional regulator compare
ECD_01814 -2.3 -1.3 C-N hydrolase family protein compare
ECD_03256 -2.2 -10.7 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01248 -2.2 -2.1 inner membrane protein, S49 peptidase family protein compare
ECD_02319 -2.2 -4.6 uncharacterized protein compare
ECD_00949 -2.2 -1.9 dihydro-orotate oxidase, FMN-linked compare
ECD_01679 -2.2 -1.0 glutathione peroxidase compare
ECD_04042 -2.2 -3.5 HflB protease modulator specific for phage lambda cII repressor compare
ECD_01887 -2.2 -1.4 inner membrane heme subunit for periplasmic YedYZ reductase compare
ECD_02042 -2.2 -1.0 DUF2574 family protein compare
ECD_01985 -2.2 -0.7 UPF0339 family protein compare
ECD_01061 -2.2 -2.9 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_02391 -2.1 -3.9 phosphoribosylaminoimidazole synthetase compare
ECD_02283 -2.1 -3.2 oxalyl CoA decarboxylase, ThDP-dependent compare
ECD_02320 -2.1 -2.3 WGR domain protein compare
ECD_02091 -2.1 -1.9 ribonucleoside hydrolase 2 compare
ECD_00881 -2.1 -4.2 putative OLD family ATP-dependent endonuclease; DUF2813 family protein compare
ECD_01481 -2.1 -1.4 glutaminase 2 compare
ECD_00202 -2.1 -6.3 endo/exonuclease/phosphatase family protein compare
ECD_02223 -2.0 -4.3 putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein compare
ECD_02618 -2.0 -2.6 putative SDR family oxidoreductase compare
ECD_03687 -2.0 -2.6 site-specific tyrosine recombinase compare
ECD_00228 -2.0 -2.3 mRNA interferase toxin of the YafO-YafN toxin-antitoxin system compare
ECD_01210 -2.0 -1.5 putative patatin-like family phospholipase compare
ECD_02857 -2.0 -1.1 hypothetical protein compare
ECD_03339 -2.0 -4.6 hypothetical protein compare
ECD_04212 -1.9 -2.3 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_01058 -1.9 -1.2 dihydro-orotase compare
ECD_00900 -1.9 -1.8 dimethyl sulfoxide reductase, anaerobic, subunit C compare
ECD_03816 -1.9 -6.6 molecular chaperone and ATPase component of HslUV protease compare
ECD_01953 -1.9 -1.8 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_04389 -1.9 -2.3 hypothetical protein compare
ECD_01230 -1.9 -1.3 outer membrane protein W compare
ECD_03817 -1.9 -4.1 peptidase component of the HslUV protease compare
ECD_02106 -1.9 -2.5 resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase compare
ECD_03067 -1.9 -1.6 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_02449 -1.8 -10.5 phosphoribosylformyl-glycineamide synthetase compare
ECD_01872 -1.8 -2.3 lipoprotein, function unknown compare
ECD_00617 -1.8 -3.9 ribonucleoside hydrolase 1 compare
ECD_01886 -1.8 -1.7 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_01749 -1.8 -0.8 D-hexose-6-phosphate epimerase-like protein compare
ECD_03590 -1.8 -3.9 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_04049 -1.8 -1.6 PspA/IM30 family protein compare
ECD_01586 -1.8 -1.3 beta-D-glucuronidase compare
ECD_01931 -1.8 -3.5 6-phosphogluconate dehydrogenase, decarboxylating compare
ECD_02258 -1.8 -1.4 putative fimbrial-like adhesin protein compare
ECD_04100 -1.8 -7.9 fructose-1,6-bisphosphatase I compare
ECD_03132 -1.7 -3.0 dehydroshikimate reductase, NAD(P)-binding compare
ECD_01664 -1.7 -0.6 putative acyl-CoA dehydrogenase compare
ECD_01614 -1.7 -1.8 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_00281 -1.7 -2.0 uncharacterized protein compare
ECD_02399 -1.7 -1.2 GMP synthetase (glutamine aminotransferase) compare
ECD_00367 -1.7 -3.7 2-carboxybenzaldehyde reductase compare
ECD_03625 -1.7 -7.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_04346 -1.7 -1.9 hypothetical protein compare
ECD_01486 -1.7 -1.2 UPF0056 family inner membrane protein compare
ECD_04113 -1.7 -7.3 aspartate carbamoyltransferase, catalytic subunit compare
ECD_03499 -1.7 -10.9 orotate phosphoribosyltransferase compare
ECD_00260 -1.7 -2.7 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_02118 -1.7 -3.6 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor compare
ECD_02946 -1.6 -2.3 evolved beta-D-galactosidase, beta subunit; cupin superfamily compare
ECD_01104 -1.6 -1.0 putative UPF0227 family esterase compare
ECD_01181 -1.6 -2.7 C4-dicarboxylic acid transporter compare
ECD_01627 -1.6 -2.0 putative MFS transporter, inner membrane protein compare
ECD_02285 -1.6 -0.9 uncharacterized protein compare
ECD_02035 -1.6 -2.8 hypothetical protein compare
ECD_01878 -1.6 -2.4 excinuclease UvrABC, endonuclease subunit compare
ECD_02109 -1.6 -2.3 microcin C ABC transporter permease compare
ECD_01167 -1.6 -0.7 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_02397 -1.6 -1.8 outer membrane integrity lipoprotein compare
ECD_00948 -1.6 -2.1 putative periplasmic pilin chaperone compare
ECD_00450 -1.5 -1.0 conserved protein, rhs-like protein compare
ECD_00081 -1.5 -5.2 transcriptional repressor-activator for carbon metabolism compare
ECD_02089 -1.5 -2.9 putative kinase compare
ECD_03106 -1.5 -6.9 ribonuclease G compare
ECD_03883 -1.5 -9.1 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_02963 -1.5 -5.5 hexuronate regulon transcriptional repressor; autorepressor compare
ECD_02524 -1.5 -3.1 DUF2892 family inner membrane rhodanese compare
ECD_01946 -1.5 -1.0 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_01863 -1.5 -0.7 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_01914 -1.5 -2.3 exodeoxyribonuclease I; exonuclease I compare
ECD_02400 -1.5 -3.2 IMP dehydrogenase compare
ECD_01694 -1.5 -0.9 fructosamine kinase family protein compare
ECD_02108 -1.5 -2.1 microcin C ABC transporter permease compare
ECD_00899 -1.5 -1.3 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_00261 -1.5 -2.4 reactive chlorine species (RCS)-specific activator of the rcl genes compare
ECD_01319 -1.5 -2.4 putative Zn(II) transporter compare
ECD_01045 -1.5 -1.6 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_01166 -1.5 -1.8 putative cation/proton antiporter compare
ECD_01365 -1.5 -0.9 putative esterase compare
ECD_01968 -1.4 -2.5 colanic acid export protein; outer membrane auxillary lipoprotein compare
ECD_01529 -1.4 -0.6 Qin prophage; uncharacterized protein compare
ECD_00136 -1.4 -2.8 putative fimbrial-like adhesin protein compare
ECD_02365 -1.4 -1.6 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_01200 -1.4 -2.5 sensory histidine kinase in two-component regulatory system with NarL compare
ECD_03238 -1.4 -3.6 D-ribulose-5-phosphate 3-epimerase compare
ECD_00690 -1.4 -4.3 fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component compare
ECD_04048 -1.4 -1.8 DUF2170 family protein compare
ECD_01952 -1.4 -2.6 putative colanic acid exporter compare
ECD_00873 -1.4 -2.8 putative NAD(P)H-dependent oxidoreductase compare
ECD_03735 -1.4 -8.6 NAD(P)H-flavin reductase compare
ECD_01747 -1.4 -1.4 methionine sulfoxide reductase B compare
ECD_01782 -1.4 -1.5 aminodeoxychorismate synthase, subunit I compare
ECD_01894 -1.4 -1.9 AMP nucleosidase compare
ECD_03143 -1.4 -2.8 zntA gene transcriptional activator compare
ECD_00967 -1.4 -1.7 methylglyoxal synthase compare
ECD_00646 -1.4 -3.2 lipoprotein compare
ECD_02064 -1.4 -2.1 D-alanyl-D-alanine endopeptidase compare
ECD_03314 -1.3 -3.9 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_03885 -1.3 -5.9 homoserine O-transsuccinylase compare
ECD_02398 -1.3 -1.4 nalidixic acid resistance protein, putative periplasmic protein compare
ECD_01843 -1.3 -2.3 trimethylamine N-oxide reductase system III, catalytic subunit compare
ECD_00755 -1.3 -3.9 UPF0104 family inner membrane protein compare
ECD_02147 -1.3 -2.8 fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein compare
ECD_00109 -1.3 -5.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_01651 -1.3 -1.5 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_00037 -1.3 -7.9 carbamoyl-phosphate synthase large subunit compare
ECD_03509 -1.3 -6.7 ATP-dependent DNA helicase compare
ECD_01307 -1.3 -0.6 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit compare
ECD_02380 -1.3 -2.1 hydrogenase 4, Fe-S subunit compare
ECD_02918 -1.3 -2.7 fimbrial protein compare
ECD_01857 -1.3 -1.3 methyl-accepting chemotaxis protein II compare
ECD_01452 -1.3 -1.1 putative periplasmic M16 family zinc metalloendopeptidase compare
ECD_00950 -1.3 -0.9 FtsZ stabilizer compare
ECD_00036 -1.3 -4.9 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase compare
ECD_01800 -1.3 -1.7 putative endopeptidase compare
ECD_01963 -1.3 -1.3 putative glycosyl transferase compare
ECD_01623 -1.3 -1.9 putative ATP-dependent helicase compare
ECD_01925 -1.3 -1.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_00494 -1.3 -1.2 DLP12 prophage; putative recombinase compare
ECD_02908 -1.3 -5.1 hypothetical protein compare
ECD_01818 -1.3 -0.6 extracellular Colicin M immunity family protein compare
ECD_01910 -1.3 -1.0 UPF0265 family protein compare
ECD_03357 -1.3 -1.4 acid-resistance protein compare
ECD_00156 -1.3 -3.8 UPF0126 family inner membrane protein compare
ECD_01201 -1.3 -1.4 nitrate/nitrite transporter compare
ECD_00495 -1.3 -2.7 inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein compare
ECD_00691 -1.2 -4.4 alpha-mannosidase compare
ECD_01048 -1.2 -1.3 multicopy suppressor of secY and secA compare
ECD_01349 -1.2 -1.3 pyruvate-flavodoxin oxidoreductase compare
ECD_03013 -1.2 -4.6 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent compare
ECD_00815 -1.2 -3.1 integrase for prophage compare
ECD_00354 -1.2 -4.5 tRNA-guanine transglycosylase compare
ECD_00501 -1.2 -1.4 uncharacterized protein, DLP12 prophage compare
ECD_02220 -1.2 -0.9 UPF0208 family inner membrane protein compare
ECD_03017 -1.2 -1.6 outer membrane lipoprotein compare
ECD_01975 -1.2 -2.3 Hsp70 chaperone family protein compare
ECD_03358 -1.2 -0.9 stress response protein acid-resistance protein compare
ECD_00629 -1.2 -3.2 tRNA-i(6)A37 methylthiotransferase compare
ECD_00473 -1.2 -4.0 N5-carboxyaminoimidazole ribonucleotide mutase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in balo experiments