Experiment set4IT006 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu1687 -3.3 -8.1 anthranilate phosphoribosyltransferase compare
Atu2684 -3.1 -2.4 hypothetical protein compare
Atu3730 -2.7 -2.5 hypothetical protein compare
Atu0017 -2.5 -3.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0434 -2.4 -4.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0346 -2.4 -6.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1446 -2.2 -2.6 two component response regulator compare
Atu0184 -2.2 -3.1 glucokinase compare
Atu1308 -2.1 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -2.1 -11.1 anthranilate synthase component I and II compare
Atu0399 -2.1 -7.0 dihydroorotase compare
Atu1688 -2.0 -5.0 indole-3-glycerol-phosphate synthase compare
Atu1307 -1.9 -6.0 dihydroorotase compare
Atu6165 -1.9 -1.2 hypothetical protein compare
Atu0298 -1.8 -6.3 orotidine 5 compare
Atu0486 -1.6 -4.9 dihydroorotate dehydrogenase compare
Atu1030 -1.6 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0400 -1.5 -5.2 orotate phosphoribosyltransferase compare
Atu3012 -1.5 -2.2 hypothetical protein compare
Atu6036 -1.4 -1.0 entry-exclusion protein compare
Atu2728 -1.4 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2710 -1.4 -6.0 hypothetical protein compare
Atu0031 -1.4 -2.0 PTS system, IIA component compare
Atu0190 -1.4 -7.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4161 -1.3 -2.3 hypothetical protein compare
Atu0103 -1.2 -7.0 penicillin-binding protein compare
Atu4773 -1.2 -1.5 two component response regulator compare
Atu1686 -1.2 -6.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0972 -1.2 -5.3 lipA protein compare
Atu1685 -1.2 -1.1 hypothetical protein compare
Atu4890 -1.2 -1.8 IS426 transposase compare
Atu3429 -1.2 -1.7 hypothetical protein compare
Atu0647 -1.1 -4.1 phosphoribosylamine--glycine ligase compare
Atu3739 -1.1 -2.4 phosphoglycerate kinase compare
Atu1225 -1.1 -1.9 hypothetical protein compare
Atu1874 -1.1 -1.7 RecA protein compare
Atu1141 -1.0 -4.2 Phosphoribosylglycinamide synthetase compare
Atu2484 -1.0 -1.7 hypothetical protein compare
Atu1850 -1.0 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0188 -1.0 -3.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1028 -1.0 -1.9 hypothetical protein compare
Atu2057 -1.0 -1.3 DNA helicase II compare
Atu4616 -1.0 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu0421 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu2125 -1.0 -0.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3727 -1.0 -2.8 hypothetical protein compare
Atu1774 -1.0 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu3469 -1.0 -1.7 phosphoglyceromutase compare
Atu1127 -1.0 -2.1 molybdopterin converting factor small subunit compare
Atu0777 -0.9 -0.9 hypothetical protein compare
Atu1845 -0.9 -2.3 phosphoribosylformylglycinamidine synthase I compare
Atu2802 -0.9 -4.0 precorrin-8X methylmutase compare
Atu0953 -0.9 -1.3 hypothetical protein compare
Atu1075 -0.9 -4.1 amidophosphoribosyltransferase compare
Atu3750 -0.9 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu3011 -0.9 -2.4 ArsR family transcriptional regulator compare
Atu3759 -0.9 -1.4 hypothetical protein compare
Atu4053 -0.9 -1.5 succinoglycan biosynthesis protein compare
Atu2796 -0.9 -3.8 precorrin-4 C11-methyltransferase compare
Atu4888 -0.9 -2.6 hypothetical protein compare
Atu3754 -0.8 -2.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2207 -0.8 -3.2 two component sensor kinase compare
Atu0535 -0.8 -4.4 hypothetical protein compare
Atu4418 -0.8 -3.7 glutaryl-CoA dehydrogenase compare
Atu2793 -0.8 -3.7 cobyrinic acid a,c-diamide synthase compare
Atu2807 -0.8 -3.7 cob(I)alamin adenosyltransferase compare
Atu1566 -0.8 -1.0 hypothetical protein compare
Atu4897 -0.8 -1.2 hypothetical protein compare
Atu0039 -0.8 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0598 -0.8 -4.1 phosphogluconate dehydratase compare
Atu2036 -0.8 -5.5 acetolactate synthase III, large subunit compare
Atu3468 -0.8 -0.8 hypothetical protein compare
Atu4896 -0.8 -2.5 acetyltransferase compare
Atu1683 -0.8 -1.6 hypothetical protein compare
Atu4866 -0.8 -3.8 hypothetical protein compare
Atu0115 -0.8 -0.8 hypothetical protein compare
Atu2800 -0.8 -2.6 precorrin-3B C17-methyltransferase compare
Atu4882 -0.8 -2.0 hypothetical protein compare
Atu2798 -0.7 -3.6 precorrin-6y methyltransferase compare
Atu0687 -0.7 -0.9 hypothetical protein compare
Atu1495 -0.7 -2.6 hypothetical protein compare
Atu4072 -0.7 -1.7 nodulation protein N compare
Atu8126 -0.7 -4.1 putative phage tail protein I compare
Atu2450 -0.7 -1.7 hypothetical protein compare
Atu4884 -0.7 -2.1 hypothetical protein compare
Atu3706 -0.7 -3.6 D-3-phosphoglycerate dehydrogenase compare
Atu2808 -0.7 -3.9 cobyric acid synthase compare
Atu4864 -0.7 -3.1 MarR family transcriptional regulator compare
Atu8019 -0.7 -2.2 hypothetical protein compare
Atu3017 -0.7 -1.2 phosphoglyceromutase compare
Atu2640 -0.7 -2.3 hypothetical protein compare
Atu2804 -0.7 -4.4 cobaltochelatase subunit compare
Atu1588 -0.7 -4.0 homoserine dehydrogenase compare
Atu2809 -0.7 -4.3 cobalamin biosynthesis protein compare
Atu4075 -0.7 -3.2 glycogen synthase compare
Atu4840 -0.7 -2.5 hypothetical protein compare
Atu0361 -0.7 -1.3 transcriptional regulator compare
Atu2555 -0.7 -2.4 L-lysine 2,3-aminomutase compare
Atu1902 -0.7 -2.9 transketolase compare
Atu2675 -0.7 -1.8 hypothetical protein compare
Atu2073 -0.7 -2.7 membrane protein compare
Atu1354 -0.7 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1760 -0.6 -1.1 hypothetical protein compare
Atu1140 -0.6 -2.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2113 -0.6 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu3009 -0.6 -0.9 exopolysaccharide production protein compare
Atu1355 -0.6 -2.6 hypothetical protein compare
Atu0606 -0.6 -1.8 hypothetical protein compare
Atu4317 -0.6 -1.6 TetR family transcriptional regulator compare
Atu2620 -0.6 -1.1 hypothetical protein compare
Atu2797 -0.6 -1.4 cobalamin biosynthesis protein compare
Atu2127 -0.6 -3.7 L-carnitine dehydratase compare
Atu1327 -0.6 -1.4 NADH-ubiquinone oxidoreductase compare
Atu4108 -0.6 -3.4 ribonuclease D compare
Atu0422 -0.6 -1.3 ABC transporter, membrane spanning protein compare
Atu0762 -0.6 -1.7 hypothetical protein compare
Atu0976 -0.6 -1.7 cycL protein compare
Atu1629 -0.6 -1.0 transcriptional regulator, ArsR family compare
Atu2554 -0.6 -1.2 lysyl-tRNA synthetase compare
Atu4711 -0.6 -2.1 two component sensor kinase compare
Atu1364 -0.6 -2.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1542 -0.6 -2.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4514 -0.6 -2.3 RpiR family transcriptional regulator compare
Atu3634 -0.6 -1.7 penicillin-binding protein dacf precursor compare
Atu3022 -0.6 -3.7 sugar ABC transporter permease compare
Atu1891 -0.6 -1.6 cobalamin biosynthesis protein compare
Atu3183 -0.6 -0.6 hypothetical protein compare
Atu3299 -0.6 -1.3 hypothetical protein compare
Atu0796 -0.6 -2.2 putative peptidase compare
Atu4470 -0.6 -2.6 iron ABC transporter ATPase compare
Atu3387 -0.6 -1.1 sigma factor compare
Atu4857 -0.6 -3.0 mobilization protein C compare
Atu2650 -0.6 -4.0 glycerol-3-phosphate dehydrogenase compare
Atu5142 -0.6 -1.1 hypothetical protein compare
Atu0977 -0.6 -2.1 serine protease DO-like protease compare
Atu2799 -0.6 -1.8 precorrin-6x reductase compare
Atu2040 -0.6 -2.4 phosphoserine phosphatase compare
Atu1466 -0.6 -0.9 hypothetical protein compare
Atu3280 -0.6 -3.0 GntR family transcriptional regulator compare
Atu5427 -0.6 -1.6 hypothetical protein compare
Atu5010 -0.6 -1.2 hypothetical protein compare
Atu0062 -0.6 -2.8 transcriptional regulator, ROK family compare
Atu3593 -0.5 -3.0 hypothetical protein compare
Atu2578 -0.5 -2.5 cAMP-dependent protein kinase regulatory subunit compare
Atu1124 -0.5 -2.3 hypothetical protein compare
Atu5125 -0.5 -1.6 GntR family transcriptional regulator compare
Atu0836 -0.5 -1.5 Glutathione-S-transferase compare
Atu4671 -0.5 -1.2 response regulator compare
Atu5498 -0.5 -2.4 oxidoreductase with iron-sulfur subunit compare
Atu0769 -0.5 -1.2 protoheme IX farnesyltransferase compare
Atu1620 -0.5 -4.0 triosephosphate isomerase compare
Atu1223 -0.5 -0.9 hypothetical protein compare
Atu3001 -0.5 -1.9 hypothetical protein compare
Atu3494 -0.5 -1.7 hypothetical protein compare
Atu3755 -0.5 -1.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1464 -0.5 -2.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0470 -0.5 -1.4 hypothetical protein compare
Atu3910 -0.5 -2.4 LamB/YcsF family protein compare
Atu3016 -0.5 -2.5 phosphoglyceromutase compare
Atu0467 -0.5 -2.5 hypothetical protein compare
Atu0437 -0.5 -3.0 hypothetical protein compare
Atu1468 -0.5 -3.3 hypothetical protein compare
Atu0926 -0.5 -2.7 hypothetical protein compare
Atu8025 -0.5 -0.7 hypothetical protein compare
Atu0041 -0.5 -0.9 glutamine amidotransferase compare
Atu3466 -0.5 -1.2 ArsR family transcriptional regulator compare
Atu3510 -0.5 -1.5 amidohydrolase compare
Atu3026 -0.5 -2.8 short chain dehydrogenase compare
Atu0086 -0.5 -0.6 ribosome-binding factor A compare
Atu2805 -0.5 -2.0 cobalamin synthesis protein compare
Atu1793 -0.5 -2.8 phosphatidylcholine synthase compare
Atu6157 -0.5 -1.7 conserved hypothetical protein compare
Atu2766 -0.5 -4.0 NAD-glutamate dehydrogenase compare
Atu0141 -0.5 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu2258 -0.5 -1.9 acetyltransferase compare
Atu0101 -0.5 -2.0 cytochrome c compare
Atu5437 -0.5 -1.8 hypothetical protein compare
Atu8127 -0.5 -4.1 hypothetical protein compare
Atu0185 -0.5 -1.5 methylglyoxal synthase compare
Atu3647 -0.5 -2.0 hypothetical protein compare
Atu4878 -0.5 -1.3 hypothetical protein compare
Atu0295 -0.5 -1.2 hypothetical protein compare
Atu0718 -0.5 -1.5 hypothetical protein compare
Atu2239 -0.5 -1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3609 -0.5 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0703 -0.5 -1.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4869 -0.5 -1.6 hypothetical protein compare
Atu2069 -0.5 -2.1 hypothetical protein compare
Atu3264 -0.5 -1.6 IclR family transcriptional regulator compare
Atu2274 -0.5 -2.8 cation efflux system protein compare
Atu0036 -0.4 -1.6 hypothetical protein compare
Atu0189 -0.4 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3483 -0.4 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1637 -0.4 -2.1 hypothetical protein compare
Atu8023 -0.4 -1.1 hypothetical protein compare
Atu4854 -0.4 -2.6 hypothetical protein compare
Atu0845 -0.4 -1.8 hypothetical protein compare
Atu0453 -0.4 -3.3 hypothetical protein compare
Atu3075 -0.4 -2.9 TetR family transcriptional regulator compare
Atu4865 -0.4 -2.7 oxidoreductase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments