Experiment set4IT005 for Pseudomonas putida KT2440

Compare to:

LB with Cholinium aspartate 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.1 -9.9 conserved protein of unknown function compare
PP_5095 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PP_0888 -2.7 -4.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1528 -2.4 -2.8 conserved protein of unknown function compare
PP_0856 -2.3 -4.3 conserved lipoprotein of unknown function compare
PP_4999 -2.2 -2.0 dihydroorotase-like protein compare
PP_1733 -1.9 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4993 -1.7 -4.2 Glutathione synthetase compare
PP_2737 -1.6 -2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4724 -1.6 -5.4 Carbamoyl-phosphate synthase small chain compare
PP_2903 -1.6 -3.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4342 -1.6 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_1994 -1.5 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_1783 -1.5 -2.2 dTDP-glucose pyrophosphorylase compare
PP_4136 -1.5 -2.2 Transcriptional regulator, LuxR family compare
PP_0719 -1.5 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4122 -1.4 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4124 -1.4 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_4723 -1.4 -7.4 Carbamoyl-phosphate synthase large chain compare
PP_1428 -1.4 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_4532 -1.4 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5331 -1.4 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_3105 -1.4 -2.5 conserved membrane protein of unknown function compare
PP_2442 -1.4 -2.9 conserved protein of unknown function, DUF480 family compare
PP_3241 -1.3 -1.7 conserved exported protein of unknown function compare
PP_4268 -1.2 -1.8 nucleoid-associated broad specificity regulator compare
PP_5329 -1.2 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2379 -1.2 -3.4 putative cytochrome oxidase biogenesis protein compare
PP_4129 -1.2 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4517 -1.2 -2.4 conserved protein of unknown function compare
PP_3408 -1.2 -3.4 cobalt transporter subunit A compare
PP_3903 -1.1 -2.1 conserved protein of unknown function compare
PP_4005 -1.1 -3.2 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4121 -1.1 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_0001 -1.1 -1.7 probable chromosome-partitioning protein compare
PP_t29 -1.1 -1.7 tRNA-Ala compare
PP_0339 -1.1 -3.6 Pyruvate dehydrogenase E1 component compare
PP_4937 -1.1 -3.2 toluene tolerance protein compare
PP_2000 -1.1 -2.4 amidophosphoribosyl transferase compare
PP_4930 -1.1 -4.0 putative small multidrug resistance protein compare
PP_4262 -1.0 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2402 -1.0 -2.1 putative Sensor histidine kinase compare
PP_2883 -1.0 -2.1 conserved protein of unknown function compare
PP_5483 -1.0 -1.7 conserved protein of unknown function compare
PP_2499 -1.0 -1.5 conserved protein of unknown function compare
PP_0435 -1.0 -6.4 Peptidase, M23/M37 family compare
PP_4519 -1.0 -7.4 Agglutination protein compare
PP_4811 -1.0 -3.5 Gamma-glutamyl phosphate reductase compare
PP_0166 -1.0 -7.2 HlyD family secretion protein compare
PP_0833 -1.0 -1.8 queuine tRNA-ribosyltransferase compare
PP_1268 -1.0 -2.6 putative HtrA suppressor protein sohA compare
PP_4343 -1.0 -4.2 Flagellar biosynthesis protein FlhF compare
PP_1734 -0.9 -2.1 Probable septum site-determining protein MinC compare
PP_1906 -0.9 -2.6 ribosomal large subunit pseudouridine synthase C compare
PP_1912 -0.9 -3.1 Phosphate acyltransferase compare
PP_2144 -0.9 -2.7 Transcriptional regulator, TetR family compare
PP_5350 -0.9 -2.3 Transcriptional regulator, RpiR family compare
PP_4722 -0.9 -3.3 Transcription elongation factor GreA compare
PP_1654 -0.9 -2.8 cysteine synthase B compare
PP_2137 -0.9 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_4204 -0.9 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4880 -0.9 -4.6 exoribonuclease R compare
PP_4943 -0.9 -1.6 putative Glycosyl transferase compare
PP_0393 -0.9 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5001 -0.9 -1.6 protease HslVU, ATPase component compare
PP_0165 -0.9 -6.6 GGDEF domain protein compare
PP_4964 -0.9 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_2794 -0.9 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_t10 -0.9 -1.9 tRNA-Pro compare
PP_4373 -0.8 -5.7 Transcriptional regulator FleQ compare
PP_4504 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0691 -0.8 -2.1 Glutamate 5-kinase compare
PP_1366 -0.8 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_0167 -0.8 -6.9 Toxin secretion ATP-binding protein compare
PP_3551 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
PP_1318 -0.8 -3.7 Cytochrome b compare
PP_2336 -0.8 -2.7 aconitate hydratase 1 compare
PP_4895 -0.8 -2.0 tRNA dimethylallyltransferase compare
PP_4370 -0.8 -3.4 Flagellar hook-basal body complex protein FliE compare
PP_0168 -0.8 -7.1 putative surface adhesion protein compare
PP_0504 -0.8 -3.5 Outer membrane protein OprG compare
PP_5053 -0.8 -2.9 Protein-export protein SecB compare
PP_2145 -0.8 -3.8 beta-N-acetylglucosaminidase compare
PP_3519 -0.8 -1.1 putative Lipoprotein compare
PP_0063 -0.8 -2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5352 -0.8 -5.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5114 -0.8 -1.5 putative adenine methyltransferase compare
PP_1788 -0.8 -1.9 conserved protein of unknown function compare
PP_1198 -0.8 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2307 -0.8 -1.1 conserved protein of unknown function compare
PP_5625 -0.8 -2.5 conserved protein of unknown function compare
PP_5597 -0.8 -2.6 conserved protein of unknown function compare
PP_1553 -0.8 -1.1 conserved protein of unknown function compare
PP_3821 -0.8 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0566 -0.8 -0.9 translation-related factor compare
PP_2378 -0.8 -1.6 Fe/S biogenesis protein NfuA compare
PP_4700 -0.7 -0.5 pantothenate synthetase compare
PP_4264 -0.7 -4.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1523 -0.7 -3.1 conserved protein of unknown function compare
PP_4482 -0.7 -2.6 Transcriptional regulator, AraC family compare
PP_4419 -0.7 -2.3 transposase compare
PP_1679 -0.7 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0672 -0.7 -5.8 Sensory box protein compare
PP_0959 -0.7 -2.0 phospholipid ABC transporter compare
PP_5017 -0.7 -1.2 Sec-independent protein translocase protein TatB compare
PP_1353 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_4944 -0.7 -1.8 Carbamoyltransferase compare
PP_2550 -0.7 -1.6 putative transcriptional regulatory protein compare
PP_1629 -0.7 -3.1 Protein RecA compare
PP_1616 -0.7 -4.1 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5445 -0.7 -0.9 conserved protein of unknown function compare
PP_2474 -0.7 -2.4 Glutathione S-transferase family protein compare
PP_5054 -0.7 -1.2 glutaredoxin 3 compare
PP_5000 -0.7 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4902 -0.7 -1.8 Oligoribonuclease compare
PP_4836 -0.7 -2.4 conserved exported protein of unknown function compare
PP_0804 -0.7 -4.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0214 -0.7 -3.0 4-aminobutyrate aminotransferase compare
PP_3232 -0.7 -2.9 Acetyltransferase, GNAT family compare
PP_5582 -0.7 -1.0 conserved protein of unknown function compare
PP_0803 -0.7 -4.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1672 -0.7 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3407 -0.7 -1.9 conserved protein of unknown function compare
PP_0406 -0.7 -3.0 Nucleotidyltransferase family protein compare
PP_1489 -0.7 -2.2 CheW domain protein compare
PP_1404 -0.7 -1.8 conserved protein of unknown function compare
PP_5717 -0.7 -1.6 conserved protein of unknown function compare
PP_0368 -0.7 -4.2 putative Acyl-CoA dehydrogenase compare
PP_4847 -0.7 -1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_3649 -0.7 -2.3 Transcriptional regulator, GntR family compare
PP_5094 -0.7 -3.1 putative enzyme with PLP binding domain compare
PP_2360 -0.7 -2.4 putative type 1 pili subunit CsuA/B protein compare
PP_5240 -0.7 -1.9 Response regulator compare
PP_5216 -0.7 -1.7 exopolyphosphatase compare
PP_5338 -0.7 -1.4 aspartate ammonia-lyase compare
PP_0127 -0.6 -2.9 Thiol:disulfide interchange protein compare
PP_4910 -0.6 -1.1 conserved protein of unknown function compare
PP_0805 -0.6 -4.2 Outer membrane efflux protein compare
PP_2011 -0.6 -3.6 conserved exported protein of unknown function compare
PP_5104 -0.6 -4.1 thiazole synthase compare
PP_0610 -0.6 -2.1 conserved exported protein of unknown function compare
PP_1099 -0.6 -1.4 Cold shock protein CapB compare
PP_5198 -0.6 -2.0 conserved protein of unknown function compare
PP_t49 -0.6 -2.8 tRNA-Met compare
PP_5583 -0.6 -1.4 conserved protein of unknown function compare
PP_5217 -0.6 -5.0 Polyphosphate kinase compare
PP_1128 -0.6 -1.8 OmpA family protein compare
PP_4263 -0.6 -2.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1808 -0.6 -1.2 glucose-6-phosphate isomerase compare
PP_2337 -0.6 -1.5 aconitate isomerase compare
PP_2939 -0.6 -2.1 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_5090 -0.6 -1.5 putative cell division protein compare
PP_1352 -0.6 -1.3 UPF0234 protein PP_1352 compare
PP_5557 -0.6 -1.1 protein of unknown function compare
PP_4250 -0.6 -4.0 cytochrome c oxidase subunit I, cbb3-type compare
PP_4556 -0.6 -2.0 conserved protein of unknown function compare
PP_4253 -0.6 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_1898 -0.6 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0806 -0.6 -5.4 putative Surface adhesion protein compare
PP_4367 -0.6 -2.0 Flagellar assembly protein FliH compare
PP_1216 -0.6 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5063 -0.6 -2.8 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4130 -0.6 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2274 -0.6 -1.4 conserved protein of unknown function compare
PP_2907 -0.6 -1.8 DNA-binding response regulator compare
PP_2773 -0.6 -1.3 conserved protein of unknown function compare
PP_5572 -0.6 -1.6 protein of unknown function compare
PP_5324 -0.6 -1.4 Response regulator compare
PP_0574 -0.6 -4.4 DNA-binding response regulator, LuxR family compare
PP_0120 -0.6 -3.3 putative zinc ABC transporter compare
PP_0434 -0.6 -3.4 Anhydro-N-acetylmuramic acid kinase compare
PP_3926 -0.6 -1.3 short-chain dehydrogenase compare
PP_4361 -0.6 -2.7 Flagellar hook-length control protein FliK compare
PP_1114 -0.6 -2.1 SEC-C domain protein compare
PP_1575 -0.6 -1.0 conserved protein of unknown function compare
PP_1987 -0.6 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_2972 -0.6 -0.9 conserved protein of unknown function compare
PP_5589 -0.6 -1.3 protein of unknown function containing Rhs repeat-associated core domain compare
PP_3757 -0.6 -1.1 Chemotaxis protein CheY compare
PP_0512 -0.6 -1.2 hypothetical protein compare
PP_5561 -0.6 -2.7 conserved protein of unknown function compare
PP_2611 -0.5 -1.9 membrane protein of unknown function compare
PP_0768 -0.5 -2.9 Response regulator/TPR domain protein compare
PP_5505 -0.5 -1.7 conserved transmembrane protein of unknown function compare
PP_5146 -0.5 -3.1 RNA pyrophosphohydrolase compare
PP_4259 -0.5 -3.6 Iron-sulfur cluster-binding protein compare
PP_3081 -0.5 -2.3 conserved protein of unknown function compare
PP_4385 -0.5 -3.0 flagellar basal-body rod protein FlgG compare
PP_5279 -0.5 -1.7 conserved protein of unknown function compare
PP_4804 -0.5 -1.6 RlpA-like lipoprotein compare
PP_0963 -0.5 -1.3 putative BolA family protein compare
PP_4384 -0.5 -3.9 Flagellar L-ring protein compare
PP_1430 -0.5 -3.5 putative periplasmic serine endoprotease DegP-like compare
PP_4961 -0.5 -1.3 putative Lipoprotein compare
PP_1646 -0.5 -2.5 putative Thioredoxin compare
PP_0872 -0.5 -2.3 Peptide chain release factor 3 compare
PP_4797 -0.5 -1.0 conserved protein of unknown function compare
PP_4707 -0.5 -1.9 OsmY-related protein compare
PP_2889 -0.5 -2.3 putative Transmembrane regulator PrtR compare
PP_1827 -0.5 -2.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Cholinium aspartate across organisms